RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEP1	YAL013W	PPH21	P23594	369 aa		13.54	□□□□□ -0.24
DEP1	YAL013W	TY2A-C	P25383	438 aa		13.54	□□□□□ -0.24
DEP1	YAL013W	NGG1	P32494	702 aa		13.54	□□□□□ -0.24
DEP1	YAL013W	PEX6	P33760	1030 aa		13.54	□□□□□ -0.24
DEP1	YAL013W	CBP4	P37267	147 aa		13.54	□□□□□ -0.24
DEP1	YAL013W	YHR218W	P38899	603 aa		13.54	□□□□□ -0.24
DEP1	YAL013W	YAL037W	P39728	267 aa		13.54	□□□□□ -0.24
DEP1	YAL013W	ZIM17	P42844	174 aa		13.54	□□□□□ -0.24
DEP1	YAL013W	TY2A-DR2	Q03483	438 aa		13.54	□□□□□ -0.24
DEP1	YAL013W	TY2A-B	Q12260	438 aa		13.54	□□□□□ -0.24
DEP1	YAL013W	TY2A-OR2	Q12293	438 aa		13.54	□□□□□ -0.24
DEP1	YAL013W	GPR1	Q12361	961 aa		13.54	□□□□□ -0.24
DEP1	YAL013W	TY2A-DR1	Q12392	438 aa		13.54	□□□□□ -0.24
DEP1	YAL013W	TY2A-OR1	Q12439	438 aa		13.54	□□□□□ -0.24
DEP1	YAL013W	TY2A-DR3	Q99303	438 aa		13.54	□□□□□ -0.24
DEP1	YAL013W	SIS1	P25294	352 aa	Known RBP	13.53	□□□□□ -0.24
DEP1	YAL013W	PET309	P32522	965 aa	Predicted RBP	13.53	□□□□□ -0.24
DEP1	YAL013W	PIM1	P36775	1133 aa		13.53	□□□□□ -0.24
DEP1	YAL013W	YBR241C	P38142	488 aa		13.53	□□□□□ -0.24
DEP1	YAL013W	RGA1	P39083	1007 aa		13.53	□□□□□ -0.24
DEP1	YAL013W	ERV46	P39727	415 aa		13.53	□□□□□ -0.24
DEP1	YAL013W	APQ12	P40532	138 aa		13.53	□□□□□ -0.24
DEP1	YAL013W	YIL001W	P40560	513 aa		13.53	□□□□□ -0.24
DEP1	YAL013W	MUP1	P50276	574 aa		13.53	□□□□□ -0.24
DEP1	YAL013W	YGR016W	P53209	190 aa		13.53	□□□□□ -0.24
DEP1	YAL013W	SWS2	P53937	143 aa		13.53	□□□□□ -0.24
DEP1	YAL013W	TRM82	Q03774	444 aa		13.53	□□□□□ -0.24
DEP1	YAL013W	SSQ1	Q05931	657 aa	Predicted RBP	13.53	□□□□□ -0.24
DEP1	YAL013W	RUP1	Q12242	671 aa		13.53	□□□□□ -0.24
DEP1	YAL013W	RPN5	Q12250	445 aa	Known RBP	13.53	□□□□□ -0.24
DEP1	YAL013W	SNF8	Q12483	233 aa		13.53	□□□□□ -0.24
DEP1	YAL013W	TY4A-H	Q6Q5P6	413 aa		13.53	□□□□□ -0.24
DEP1	YAL013W	BCY1	P07278	416 aa	Known RBP	13.52	□□□□□ -0.25
DEP1	YAL013W	MEI5	P32489	222 aa		13.52	□□□□□ -0.25
DEP1	YAL013W	MNT3	P40549	630 aa		13.52	□□□□□ -0.25
DEP1	YAL013W	KEL2	P50090	882 aa		13.52	□□□□□ -0.25
DEP1	YAL013W	RHO3	Q00245	231 aa	Known RBP	13.52	□□□□□ -0.25
DEP1	YAL013W	YMR010W	Q03687	405 aa		13.52	□□□□□ -0.25
DEP1	YAL013W	YML053C	Q04978	212 aa		13.52	□□□□□ -0.25
DEP1	YAL013W	YFT2	Q06676	274 aa		13.52	□□□□□ -0.25
DEP1	YAL013W	Q0010	Q9ZZX9	128 aa		13.52	□□□□□ -0.25
DEP1	YAL013W	SLH1	P53327	1967 aa	Known RBP	13.51	□□□□□ -0.25
DEP1	YAL013W	DAP2	P18962	818 aa		13.51	□□□□□ -0.25
DEP1	YAL013W	SYP1	P25623	870 aa	Known RBP	13.51	□□□□□ -0.25
DEP1	YAL013W	SEC17	P32602	292 aa		13.51	□□□□□ -0.25
DEP1	YAL013W	VPS21	P36017	210 aa	Known RBP	13.51	□□□□□ -0.25
DEP1	YAL013W	RRN10	P38204	145 aa		13.51	□□□□□ -0.25
DEP1	YAL013W	FAA2	P39518	744 aa		13.51	□□□□□ -0.25
DEP1	YAL013W	PSA1	P41940	361 aa	Known RBP	13.51	□□□□□ -0.25
DEP1	YAL013W	BIO3	P50277	480 aa		13.51	□□□□□ -0.25
DEP1	YAL013W	ERG26	P53199	349 aa	Known RBP	13.51	□□□□□ -0.25
DEP1	YAL013W	YNR021W	P53723	404 aa	Known RBP	13.51	□□□□□ -0.25
DEP1	YAL013W	GOR1	P53839	350 aa		13.51	□□□□□ -0.25
DEP1	YAL013W	MFG1	Q07684	458 aa		13.51	□□□□□ -0.25
DEP1	YAL013W	TAF3	Q12297	353 aa		13.51	□□□□□ -0.25
DEP1	YAL013W	YLR111W	Q12528	110 aa		13.51	□□□□□ -0.25
DEP1	YAL013W	FMP27	Q06179	2628 aa		13.5	□□□□□ -0.25
DEP1	YAL013W	TY4B-P	A0A0B7P3V8	1104 aa		13.5	□□□□□ -0.25
DEP1	YAL013W	LAT1	P12695	482 aa	Known RBP	13.5	□□□□□ -0.25
DEP1	YAL013W	STE6	P12866	1290 aa		13.5	□□□□□ -0.25
DEP1	YAL013W	FUR1	P18562	216 aa	Known RBP	13.5	□□□□□ -0.25
DEP1	YAL013W	URA4	P20051	364 aa		13.5	□□□□□ -0.25
DEP1	YAL013W	NTR2	P36118	322 aa	Predicted RBP	13.5	□□□□□ -0.25
DEP1	YAL013W	GLG1	P36143	616 aa		13.5	□□□□□ -0.25
DEP1	YAL013W	MTW1	P39731	289 aa		13.5	□□□□□ -0.25
DEP1	YAL013W	VRG4	P40107	337 aa		13.5	□□□□□ -0.25
DEP1	YAL013W	ROY1	Q04847	553 aa		13.5	□□□□□ -0.25
DEP1	YAL013W	YLL007C	Q07799	665 aa		13.5	□□□□□ -0.25
DEP1	YAL013W	GYP1	Q08484	637 aa		13.5	□□□□□ -0.25
DEP1	YAL013W	ULA1	Q12059	462 aa		13.5	□□□□□ -0.25
DEP1	YAL013W	NSI1	Q12457	570 aa		13.5	□□□□□ -0.25
DEP1	YAL013W	KIN2	P13186	1147 aa	Known RBP	13.49	□□□□□ -0.25
DEP1	YAL013W	BUD14	P27637	709 aa		13.49	□□□□□ -0.25
DEP1	YAL013W	CAT2	P32796	670 aa	Known RBP	13.49	□□□□□ -0.25
DEP1	YAL013W	UGP1	P32861	499 aa	Known RBP	13.49	□□□□□ -0.25
DEP1	YAL013W	MET30	P39014	640 aa		13.49	□□□□□ -0.25
DEP1	YAL013W	PLB1	P39105	664 aa		13.49	□□□□□ -0.25
DEP1	YAL013W	GUS1	P46655	708 aa	Known RBP RIP-Chip data	13.49	□□□□□ -0.25	not detected
DEP1	YAL013W	UGO1	Q03327	502 aa		13.49	□□□□□ -0.25
DEP1	YAL013W	YKU80	Q04437	629 aa		13.49	□□□□□ -0.25
DEP1	YAL013W	SWF1	Q04629	336 aa		13.49	□□□□□ -0.25
DEP1	YAL013W	GET4	Q12125	312 aa		13.49	□□□□□ -0.25
DEP1	YAL013W	ATP4	P05626	244 aa		13.48	□□□□□ -0.25
DEP1	YAL013W	UNG1	P12887	359 aa		13.48	□□□□□ -0.25
DEP1	YAL013W	YAP1	P19880	650 aa	Known RBP	13.48	□□□□□ -0.25
DEP1	YAL013W	ADE1	P27616	306 aa		13.48	□□□□□ -0.25
DEP1	YAL013W	SPT16	P32558	1035 aa	Known RBP	13.48	□□□□□ -0.25
DEP1	YAL013W	BEM4	P39011	633 aa		13.48	□□□□□ -0.25
DEP1	YAL013W	ELO1	P39540	310 aa		13.48	□□□□□ -0.25
DEP1	YAL013W	RSP5	P39940	809 aa	Known RBP	13.48	□□□□□ -0.25
DEP1	YAL013W	YNL095C	P53932	642 aa		13.48	□□□□□ -0.25
DEP1	YAL013W	MTQ2	Q03920	221 aa	Predicted RBP	13.48	□□□□□ -0.25
DEP1	YAL013W	YDR444W	Q04093	687 aa		13.48	□□□□□ -0.25
DEP1	YAL013W	YPR022C	Q12139	1133 aa		13.48	□□□□□ -0.25
DEP1	YAL013W	YOR114W	Q12219	294 aa		13.48	□□□□□ -0.25
DEP1	YAL013W	RPS17A	P02407	136 aa	Known RBP	13.47	□□□□□ -0.25
DEP1	YAL013W	CBP2	P03874	630 aa	Predicted RBP	13.47	□□□□□ -0.25
DEP1	YAL013W	GCD2	P12754	651 aa	Predicted RBP	13.47	□□□□□ -0.25
DEP1	YAL013W	RPS17B	P14127	136 aa	Known RBP	13.47	□□□□□ -0.25
DEP1	YAL013W	SPB1	P25582	841 aa	Predicted RBP	13.47	□□□□□ -0.25

Retrieved 100 of 5,963 RNA–protein pairs in 60.5 ms