RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 FRMPD3Q5JV73 1810 aa11.49□□□□□ -0.57
UPF1-213ENST00000601981 SOWAHBA6NEL2 793 aa11.48□□□□□ -0.57
UPF1-213ENST00000601981 MSCO60682 206 aa11.48□□□□□ -0.57
UPF1-213ENST00000601981 STAM2O75886 525 aa11.48□□□□□ -0.57
UPF1-213ENST00000601981 EIF2AK2P19525 551 aaKnown RBP11.48□□□□□ -0.57
UPF1-213ENST00000601981 CCND2P30279 289 aa11.48□□□□□ -0.57
UPF1-213ENST00000601981 CYP2C19P33261 490 aa11.48□□□□□ -0.57
UPF1-213ENST00000601981 GUCY1B3Q02153 619 aa11.48□□□□□ -0.57
UPF1-213ENST00000601981 STXBP2Q15833 593 aa11.48□□□□□ -0.57
UPF1-213ENST00000601981 TYW1BQ6NUM6 668 aa11.48□□□□□ -0.57
UPF1-213ENST00000601981 XRRA1Q6P2D8 792 aa11.48□□□□□ -0.57
UPF1-213ENST00000601981 DAGLBQ8NCG7 672 aa11.48□□□□□ -0.57
UPF1-213ENST00000601981 ZNF396Q96N95 335 aaPredicted RBP11.48□□□□□ -0.57
UPF1-213ENST00000601981 TAAR1Q96RJ0 339 aa11.48□□□□□ -0.57
UPF1-213ENST00000601981 TMEM106CQ9BVX2 250 aa11.48□□□□□ -0.57
UPF1-213ENST00000601981 VTA1Q9NP79 307 aa11.48□□□□□ -0.57
UPF1-213ENST00000601981 FLRT1Q9NZU1 646 aa11.48□□□□□ -0.57
UPF1-213ENST00000601981 ZHX1Q9UKY1 873 aaPredicted RBP11.48□□□□□ -0.57
UPF1-213ENST00000601981 CFAP45Q9UL16 551 aa11.48□□□□□ -0.57
UPF1-213ENST00000601981 PCDHA4Q9UN74 947 aa11.48□□□□□ -0.57
UPF1-213ENST00000601981 RPTORQ8N122 1335 aa11.48□□□□□ -0.57
UPF1-213ENST00000601981 MYH15Q9Y2K3 1946 aa11.47□□□□□ -0.57
UPF1-213ENST00000601981 GADD45BO75293 160 aaPredicted RBP11.47□□□□□ -0.57
UPF1-213ENST00000601981 NR3C2P08235 984 aa11.47□□□□□ -0.57
UPF1-213ENST00000601981 CAPN2P17655 700 aa11.47□□□□□ -0.57
UPF1-213ENST00000601981 CNGA1P29973 690 aa11.47□□□□□ -0.57
UPF1-213ENST00000601981 CACNB2Q08289 660 aaPredicted RBP11.47□□□□□ -0.57
UPF1-213ENST00000601981 ACVR2BQ13705 512 aa11.47□□□□□ -0.57
UPF1-213ENST00000601981 GNL2Q13823 731 aaKnown RBP11.47□□□□□ -0.57
UPF1-213ENST00000601981 PGM5Q15124 567 aa11.47□□□□□ -0.57
UPF1-213ENST00000601981 UBE2SQ16763 222 aa11.47□□□□□ -0.57
UPF1-213ENST00000601981 GNPTABQ3T906 1256 aa11.47□□□□□ -0.57
UPF1-213ENST00000601981 KRT40Q6A162 431 aa11.47□□□□□ -0.57
UPF1-213ENST00000601981 FAM173BQ6P4H8 233 aa11.47□□□□□ -0.57
UPF1-213ENST00000601981 BLIDQ8IZY5 108 aa11.47□□□□□ -0.57
UPF1-213ENST00000601981 MORC4Q8TE76 937 aa11.47□□□□□ -0.57
UPF1-213ENST00000601981 LEO1Q8WVC0 666 aaPredicted RBP11.47□□□□□ -0.57
UPF1-213ENST00000601981 SYAP1Q96A49 352 aaPredicted RBP11.47□□□□□ -0.57
UPF1-213ENST00000601981 ZNF333Q96JL9 665 aa11.47□□□□□ -0.57
UPF1-213ENST00000601981 FGD4Q96M96 766 aa11.47□□□□□ -0.57
UPF1-213ENST00000601981 AIFM3Q96NN9 605 aa11.47□□□□□ -0.57
UPF1-213ENST00000601981 PDCD2LQ9BRP1 358 aa11.47□□□□□ -0.57
UPF1-213ENST00000601981 PHF20Q9BVI0 1012 aa11.47□□□□□ -0.57
UPF1-213ENST00000601981 ANO3Q9BYT9 981 aa11.47□□□□□ -0.57
UPF1-213ENST00000601981 GZF1Q9H116 711 aaPredicted RBP11.47□□□□□ -0.57
UPF1-213ENST00000601981 COL20A1Q9P218 1284 aa11.47□□□□□ -0.57
UPF1-213ENST00000601981 PCDH10Q9P2E7 1040 aa11.47□□□□□ -0.57
UPF1-213ENST00000601981 PCDHA6Q9UN73 950 aa11.47□□□□□ -0.57
UPF1-213ENST00000601981 PCDHA8Q9Y5H6 950 aa11.47□□□□□ -0.57
UPF1-213ENST00000601981 KIAA0100Q14667 2235 aaKnown RBP11.47□□□□□ -0.57
UPF1-213ENST00000601981 FRMPD4Q14CM0 1322 aa11.46□□□□□ -0.57
UPF1-213ENST00000601981 CCDC194A0A1B0GVG4 234 aa11.46□□□□□ -0.57
UPF1-213ENST00000601981 EIF3JO75822 258 aaKnown RBP11.46□□□□□ -0.57
UPF1-213ENST00000601981 MYCLP12524 364 aaPredicted RBP11.46□□□□□ -0.57
UPF1-213ENST00000601981 CYBAP13498 195 aa11.46□□□□□ -0.57
UPF1-213ENST00000601981 AKR1A1P14550 325 aa11.46□□□□□ -0.57
UPF1-213ENST00000601981 EDNRBP24530 442 aa11.46□□□□□ -0.57
UPF1-213ENST00000601981 KRT2P35908 639 aa11.46□□□□□ -0.57
UPF1-213ENST00000601981 CLK2P49760 499 aaKnown RBP11.46□□□□□ -0.57
UPF1-213ENST00000601981 MAP3K21Q5TCX8 1036 aa11.46□□□□□ -0.57
UPF1-213ENST00000601981 JAKMIP3Q5VZ66 844 aa11.46□□□□□ -0.57
UPF1-213ENST00000601981 PCNX4Q63HM2 1172 aa11.46□□□□□ -0.57
UPF1-213ENST00000601981 CAVIN1Q6NZI2 390 aaKnown RBP11.46□□□□□ -0.57
UPF1-213ENST00000601981 KCNV1Q6PIU1 500 aa11.46□□□□□ -0.57
UPF1-213ENST00000601981 KRT25Q7Z3Z0 450 aa11.46□□□□□ -0.57
UPF1-213ENST00000601981 SPATA32Q96LK8 384 aa11.46□□□□□ -0.57
UPF1-213ENST00000601981 PURBQ96QR8 312 aaKnown RBP11.46□□□□□ -0.57
UPF1-213ENST00000601981 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.46□□□□□ -0.579e-6■■■■■ 32.4
UPF1-213ENST00000601981 RNF208Q9H0X6 261 aa11.46□□□□□ -0.57
UPF1-213ENST00000601981 FAM184BQ9ULE4 1060 aa11.46□□□□□ -0.57
UPF1-213ENST00000601981 KCNJ14Q9UNX9 436 aa11.46□□□□□ -0.57
UPF1-213ENST00000601981 ASTN1O14525 1302 aa11.45□□□□□ -0.58
UPF1-213ENST00000601981 KIF28PB7ZC32 967 aa11.45□□□□□ -0.58
UPF1-213ENST00000601981 SEPT4O43236 478 aa11.45□□□□□ -0.58
UPF1-213ENST00000601981 SNAI1O95863 264 aaPredicted RBP11.45□□□□□ -0.58
UPF1-213ENST00000601981 IGHA2P01877 340 aa11.45□□□□□ -0.58
UPF1-213ENST00000601981 MMP1P03956 469 aa11.45□□□□□ -0.58
UPF1-213ENST00000601981 CCL5P13501 91 aa11.45□□□□□ -0.58
UPF1-213ENST00000601981 U2AF2P26368 475 aaKnown RBP eCLIP11.45□□□□□ -0.58
UPF1-213ENST00000601981 DEKP35659 375 aaKnown RBP11.45□□□□□ -0.58
UPF1-213ENST00000601981 ZNF76P36508 570 aa11.45□□□□□ -0.58
UPF1-213ENST00000601981 TRIM32Q13049 653 aa11.45□□□□□ -0.58
UPF1-213ENST00000601981 TTLL4Q14679 1199 aa11.45□□□□□ -0.58
UPF1-213ENST00000601981 NONOQ15233 471 aaKnown RBP eCLIP11.45□□□□□ -0.582e-6■■■□□ 17
UPF1-213ENST00000601981 MYSM1Q5VVJ2 828 aa11.45□□□□□ -0.58
UPF1-213ENST00000601981 EEPD1Q7L9B9 569 aa11.45□□□□□ -0.58
UPF1-213ENST00000601981 NLRX1Q86UT6 975 aa11.45□□□□□ -0.58
UPF1-213ENST00000601981 FBXO16Q8IX29 292 aaPredicted RBP11.45□□□□□ -0.58
UPF1-213ENST00000601981 SCFD2Q8WU76 684 aa11.45□□□□□ -0.58
UPF1-213ENST00000601981 CDHR1Q96JP9 859 aa11.45□□□□□ -0.58
UPF1-213ENST00000601981 SPC25Q9HBM1 224 aa11.45□□□□□ -0.58
UPF1-213ENST00000601981 RCOR1Q9UKL0 485 aa11.45□□□□□ -0.58
UPF1-213ENST00000601981 NKRFO15226 690 aaKnown RBP eCLIP11.44□□□□□ -0.582e-6■□□□□ 10.4
UPF1-213ENST00000601981 MYCP01106 439 aaPredicted RBP11.44□□□□□ -0.58
UPF1-213ENST00000601981 RARBP10826 455 aa11.44□□□□□ -0.58
UPF1-213ENST00000601981 SREBF1P36956 1147 aa11.44□□□□□ -0.58
UPF1-213ENST00000601981 ZNF445P59923 1031 aa11.44□□□□□ -0.58
UPF1-213ENST00000601981 ZSCAN23Q3MJ62 389 aa11.44□□□□□ -0.58
UPF1-213ENST00000601981 IQSEC1Q6DN90 963 aa11.44□□□□□ -0.58
UPF1-213ENST00000601981 VSIG10LQ86VR7 867 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms