RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 TSGA10Q9BZW7 698 aa20.29■□□□□ 0.84
UPF1-210ENST00000600689 CXorf56Q9H5V9 222 aa20.29■□□□□ 0.84
UPF1-210ENST00000600689 NID2Q14112 1375 aa20.29■□□□□ 0.84
UPF1-210ENST00000600689 CCNT1O60563 726 aaKnown RBP20.29■□□□□ 0.84
UPF1-210ENST00000600689 NR1D1P20393 614 aa20.29■□□□□ 0.84
UPF1-210ENST00000600689 DDX42Q86XP3 938 aaKnown RBP eCLIP20.29■□□□□ 0.84
UPF1-210ENST00000600689 CEP57Q86XR8 500 aa20.29■□□□□ 0.84
UPF1-210ENST00000600689 GLIS3Q8NEA6 775 aa20.29■□□□□ 0.84
UPF1-210ENST00000600689 BAZ2AQ9UIF9 1905 aaKnown RBP20.29■□□□□ 0.84
UPF1-210ENST00000600689 CNTNAP4Q9C0A0 1308 aa20.28■□□□□ 0.84
UPF1-210ENST00000600689 RHOBTB3O94955 611 aa20.28■□□□□ 0.84
UPF1-210ENST00000600689 RPS8P62241 208 aaKnown RBP20.28■□□□□ 0.84
UPF1-210ENST00000600689 TXNRD3Q86VQ6 643 aa20.28■□□□□ 0.84
UPF1-210ENST00000600689 NARFQ9UHQ1 456 aa20.28■□□□□ 0.84
UPF1-210ENST00000600689 MYH2Q9UKX2 1941 aa20.28■□□□□ 0.84
UPF1-210ENST00000600689 CALM1P0DP23 149 aa20.28■□□□□ 0.84
UPF1-210ENST00000600689 CALM2P0DP24 149 aa20.28■□□□□ 0.84
UPF1-210ENST00000600689 CALM3P0DP25 149 aa20.28■□□□□ 0.84
UPF1-210ENST00000600689 TCP1P17987 556 aaKnown RBP20.28■□□□□ 0.84
UPF1-210ENST00000600689 SF3B2Q13435 895 aaKnown RBP20.28■□□□□ 0.84
UPF1-210ENST00000600689 EP400NLQ6ZTU2 488 aa20.28■□□□□ 0.84
UPF1-210ENST00000600689 CCDC47Q96A33 483 aaKnown RBP20.28■□□□□ 0.84
UPF1-210ENST00000600689 PURBQ96QR8 312 aaKnown RBP20.28■□□□□ 0.84
UPF1-210ENST00000600689 PYM1Q9BRP8 204 aaKnown RBP20.28■□□□□ 0.84
UPF1-210ENST00000600689 NDST4Q9H3R1 872 aa20.28■□□□□ 0.84
UPF1-210ENST00000600689 SEMA6BQ9H3T3 888 aa20.28■□□□□ 0.84
UPF1-210ENST00000600689 TBC1D7Q9P0N9 293 aa20.28■□□□□ 0.84
UPF1-210ENST00000600689 CCNL1Q9UK58 526 aaPredicted RBP20.28■□□□□ 0.84
UPF1-210ENST00000600689 A0A1B0GUL6 1792 aa20.28■□□□□ 0.84
UPF1-210ENST00000600689 MEFVO15553 781 aaPredicted RBP20.28■□□□□ 0.84
UPF1-210ENST00000600689 PALMO75781 387 aa20.28■□□□□ 0.84
UPF1-210ENST00000600689 ODF2Q5BJF6 829 aa20.28■□□□□ 0.84
UPF1-210ENST00000600689 EMBQ6PCB8 327 aa20.28■□□□□ 0.84
UPF1-210ENST00000600689 ZNF473Q8WTR7 871 aaKnown RBP20.28■□□□□ 0.84
UPF1-210ENST00000600689 DYNLL2Q96FJ2 89 aa20.28■□□□□ 0.84
UPF1-210ENST00000600689 NLRP3Q96P20 1036 aa20.28■□□□□ 0.84
UPF1-210ENST00000600689 TRIM9Q9C026 710 aa20.28■□□□□ 0.84
UPF1-210ENST00000600689 TCP11L1Q9NUJ3 509 aa20.28■□□□□ 0.84
UPF1-210ENST00000600689 B4GALNT4Q76KP1 1039 aa20.27■□□□□ 0.84
UPF1-210ENST00000600689 CABS1Q96KC9 395 aa20.27■□□□□ 0.84
UPF1-210ENST00000600689 STX8Q9UNK0 236 aa20.27■□□□□ 0.84
UPF1-210ENST00000600689 CACNA1SQ13698 1873 aa20.27■□□□□ 0.84
UPF1-210ENST00000600689 TMOD1P28289 359 aa20.27■□□□□ 0.84
UPF1-210ENST00000600689 TXKP42681 527 aa20.27■□□□□ 0.84
UPF1-210ENST00000600689 PPP2R5BQ15173 497 aa20.27■□□□□ 0.84
UPF1-210ENST00000600689 NOC3LQ8WTT2 800 aaKnown RBP20.27■□□□□ 0.84
UPF1-210ENST00000600689 ARHGEF1Q92888 912 aaKnown RBP20.27■□□□□ 0.84
UPF1-210ENST00000600689 FAM212AQ96EL1 285 aa20.27■□□□□ 0.84
UPF1-210ENST00000600689 TIAM2Q8IVF5 1701 aa20.27■□□□□ 0.83
UPF1-210ENST00000600689 RPS6KA4O75676 772 aa20.26■□□□□ 0.83
UPF1-210ENST00000600689 IFT20Q8IY31 132 aa20.26■□□□□ 0.83
UPF1-210ENST00000600689 DHTKD1Q96HY7 919 aaPredicted RBP20.26■□□□□ 0.83
UPF1-210ENST00000600689 CCT8L2Q96SF2 557 aa20.26■□□□□ 0.83
UPF1-210ENST00000600689 CEP89Q96ST8 783 aa20.26■□□□□ 0.83
UPF1-210ENST00000600689 MYH6P13533 1939 aa20.26■□□□□ 0.83
UPF1-210ENST00000600689 BICDL2A1A5D9 508 aa20.26■□□□□ 0.83
UPF1-210ENST00000600689 USP17L3A6NCW0 530 aa20.26■□□□□ 0.83
UPF1-210ENST00000600689 USP17L4A6NCW7 530 aa20.26■□□□□ 0.83
UPF1-210ENST00000600689 USP17L8P0C7I0 530 aa20.26■□□□□ 0.83
UPF1-210ENST00000600689 PRDX5P30044 214 aa20.26■□□□□ 0.83
UPF1-210ENST00000600689 USP8P40818 1118 aa20.26■□□□□ 0.83
UPF1-210ENST00000600689 TFAP4Q01664 338 aa20.26■□□□□ 0.83
UPF1-210ENST00000600689 CFAP221Q4G0U5 840 aa20.26■□□□□ 0.83
UPF1-210ENST00000600689 KLHDC7AQ5VTJ3 777 aa20.26■□□□□ 0.83
UPF1-210ENST00000600689 USP17L1Q7RTZ2 530 aa20.26■□□□□ 0.83
UPF1-210ENST00000600689 KIAA0895Q8NCT3 520 aa20.26■□□□□ 0.83
UPF1-210ENST00000600689 CASKIN2Q8WXE0 1202 aa20.26■□□□□ 0.83
UPF1-210ENST00000600689 NOX5Q96PH1 765 aa20.26■□□□□ 0.83
UPF1-210ENST00000600689 USP21Q9UK80 565 aa20.26■□□□□ 0.83
UPF1-210ENST00000600689 PCDHA4Q9UN74 947 aa20.26■□□□□ 0.83
UPF1-210ENST00000600689 PLAGL2Q9UPG8 496 aa20.26■□□□□ 0.83
UPF1-210ENST00000600689 PLAAQ9Y263 795 aa20.26■□□□□ 0.83
UPF1-210ENST00000600689 DDAH1O94760 285 aa20.25■□□□□ 0.83
UPF1-210ENST00000600689 TRAPPC10P48553 1259 aa20.25■□□□□ 0.83
UPF1-210ENST00000600689 VWA3BQ502W6 1294 aa20.25■□□□□ 0.83
UPF1-210ENST00000600689 SLC10A5Q5PT55 438 aa20.25■□□□□ 0.83
UPF1-210ENST00000600689 ALS2CLQ60I27 953 aa20.25■□□□□ 0.83
UPF1-210ENST00000600689 ARL6IP4Q66PJ3 421 aaKnown RBP20.25■□□□□ 0.83
UPF1-210ENST00000600689 KBTBD4Q9NVX7 518 aa20.25■□□□□ 0.83
UPF1-210ENST00000600689 MCM9Q9NXL9 1143 aa20.25■□□□□ 0.83
UPF1-210ENST00000600689 FRMD3A2A2Y4 597 aa20.25■□□□□ 0.83
UPF1-210ENST00000600689 RDXP35241 583 aaKnown RBP20.25■□□□□ 0.83
UPF1-210ENST00000600689 RCAN1P53805 252 aa20.25■□□□□ 0.83
UPF1-210ENST00000600689 FAM114A1Q8IWE2 563 aa20.25■□□□□ 0.83
UPF1-210ENST00000600689 PACSIN1Q9BY11 444 aa20.25■□□□□ 0.83
UPF1-210ENST00000600689 PCDHA6Q9UN73 950 aa20.25■□□□□ 0.83
UPF1-210ENST00000600689 PCDHA8Q9Y5H6 950 aa20.25■□□□□ 0.83
UPF1-210ENST00000600689 MECOMQ03112 1051 aa20.25■□□□□ 0.83
UPF1-210ENST00000600689 KCNB1Q14721 858 aa20.25■□□□□ 0.83
UPF1-210ENST00000600689 SCLT1Q96NL6 688 aa20.25■□□□□ 0.83
UPF1-210ENST00000600689 CALML3P27482 149 aa20.24■□□□□ 0.83
UPF1-210ENST00000600689 FBXO33Q7Z6M2 555 aa20.24■□□□□ 0.83
UPF1-210ENST00000600689 NLRP14Q86W24 1093 aa20.24■□□□□ 0.83
UPF1-210ENST00000600689 PPP1R37O75864 691 aa20.24■□□□□ 0.83
UPF1-210ENST00000600689 E2F5Q15329 346 aa20.24■□□□□ 0.83
UPF1-210ENST00000600689 RETREG2Q8NC44 543 aa20.24■□□□□ 0.83
UPF1-210ENST00000600689 SLC44A5Q8NCS7 719 aa20.24■□□□□ 0.83
UPF1-210ENST00000600689 PNMA1Q8ND90 353 aa20.24■□□□□ 0.83
UPF1-210ENST00000600689 NSUN4Q96CB9 384 aaKnown RBP20.24■□□□□ 0.83
UPF1-210ENST00000600689 CCDC114Q96M63 670 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms