RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 MMP3P08254 477 aa18.3■□□□□ 0.52
VRK3-221ENST00000600284 ACRP10323 421 aa18.3■□□□□ 0.52
VRK3-221ENST00000600284 LIFRP42702 1097 aa18.3■□□□□ 0.52
VRK3-221ENST00000600284 GNAQP50148 359 aa18.3■□□□□ 0.52
VRK3-221ENST00000600284 LAMC2Q13753 1193 aa18.3■□□□□ 0.52
VRK3-221ENST00000600284 CREB3L3Q68CJ9 461 aa18.3■□□□□ 0.52
VRK3-221ENST00000600284 ZNF654Q8IZM8 581 aa18.3■□□□□ 0.52
VRK3-221ENST00000600284 AFG1LQ8WV93 481 aa18.3■□□□□ 0.52
VRK3-221ENST00000600284 CDX2Q99626 313 aaPredicted RBP18.3■□□□□ 0.52
VRK3-221ENST00000600284 TTYH1Q9H313 450 aaPredicted RBP18.3■□□□□ 0.52
VRK3-221ENST00000600284 TRMT13Q9NUP7 481 aaKnown RBP18.3■□□□□ 0.52
VRK3-221ENST00000600284 MRVI1Q9Y6F6 885 aa18.3■□□□□ 0.52
VRK3-221ENST00000600284 SCN10AQ9Y5Y9 1956 aa18.3■□□□□ 0.52
VRK3-221ENST00000600284 UMODL1Q5DID0 1318 aa18.29■□□□□ 0.52
VRK3-221ENST00000600284 SH2B2O14492 632 aaPredicted RBP18.29■□□□□ 0.52
VRK3-221ENST00000600284 PFKMP08237 780 aa18.29■□□□□ 0.52
VRK3-221ENST00000600284 CALM1P0DP23 149 aa18.29■□□□□ 0.52
VRK3-221ENST00000600284 CALM2P0DP24 149 aa18.29■□□□□ 0.52
VRK3-221ENST00000600284 CALM3P0DP25 149 aa18.29■□□□□ 0.52
VRK3-221ENST00000600284 TGFB3P10600 412 aa18.29■□□□□ 0.52
VRK3-221ENST00000600284 HOXA13P31271 388 aaPredicted RBP18.29■□□□□ 0.52
VRK3-221ENST00000600284 CCL23P55773 120 aa18.29■□□□□ 0.52
VRK3-221ENST00000600284 PGM5Q15124 567 aa18.29■□□□□ 0.52
VRK3-221ENST00000600284 DGKDQ16760 1214 aa18.29■□□□□ 0.52
VRK3-221ENST00000600284 FAM47CQ5HY64 1035 aa18.29■□□□□ 0.52
VRK3-221ENST00000600284 SESTD1Q86VW0 696 aa18.29■□□□□ 0.52
VRK3-221ENST00000600284 WNT8AQ9H1J5 351 aa18.29■□□□□ 0.52
VRK3-221ENST00000600284 ANO2Q9NQ90 1003 aa18.29■□□□□ 0.52
VRK3-221ENST00000600284 CCDC69A6NI79 296 aa18.28■□□□□ 0.52
VRK3-221ENST00000600284 PITPNM1O00562 1244 aa18.28■□□□□ 0.52
VRK3-221ENST00000600284 CYP2C9P11712 490 aa18.28■□□□□ 0.52
VRK3-221ENST00000600284 MYCLP12524 364 aaPredicted RBP18.28■□□□□ 0.52
VRK3-221ENST00000600284 DNAJB2P25686 324 aa18.28■□□□□ 0.52
VRK3-221ENST00000600284 CCND2P30279 289 aa18.28■□□□□ 0.52
VRK3-221ENST00000600284 RNF20Q5VTR2 975 aa18.28■□□□□ 0.52
VRK3-221ENST00000600284 NFXL1Q6ZNB6 911 aa18.28■□□□□ 0.52
VRK3-221ENST00000600284 DHX37Q8IY37 1157 aaKnown RBP18.28■□□□□ 0.52
VRK3-221ENST00000600284 PPTC7Q8NI37 304 aa18.28■□□□□ 0.52
VRK3-221ENST00000600284 RRP36Q96EU6 259 aaKnown RBP18.28■□□□□ 0.52
VRK3-221ENST00000600284 KIAA1217Q5T5P2 1943 aa18.27■□□□□ 0.52
VRK3-221ENST00000600284 STAM2O75886 525 aa18.27■□□□□ 0.52
VRK3-221ENST00000600284 RGS20O76081 388 aa18.27■□□□□ 0.52
VRK3-221ENST00000600284 RFC2P35250 354 aa18.27■□□□□ 0.52
VRK3-221ENST00000600284 PPFIA4O75335 1185 aa18.26■□□□□ 0.51
VRK3-221ENST00000600284 BFSP2Q13515 415 aa18.26■□□□□ 0.51
VRK3-221ENST00000600284 MYSM1Q5VVJ2 828 aa18.26■□□□□ 0.51
VRK3-221ENST00000600284 FCHSD1Q86WN1 690 aa18.26■□□□□ 0.51
VRK3-221ENST00000600284 RETREG2Q8NC44 543 aa18.26■□□□□ 0.51
VRK3-221ENST00000600284 KAT2BQ92831 832 aa18.26■□□□□ 0.51
VRK3-221ENST00000600284 TIFAQ96CG3 184 aa18.26■□□□□ 0.51
VRK3-221ENST00000600284 MYL10Q9BUA6 226 aa18.26■□□□□ 0.51
VRK3-221ENST00000600284 KATNAL1Q9BW62 490 aa18.26■□□□□ 0.51
VRK3-221ENST00000600284 SEC63Q9UGP8 760 aaKnown RBP18.26■□□□□ 0.51
VRK3-221ENST00000600284 NOD1Q9Y239 953 aa18.26■□□□□ 0.51
VRK3-221ENST00000600284 FRMPD4Q14CM0 1322 aa18.25■□□□□ 0.51
VRK3-221ENST00000600284 HOXD8P13378 290 aaPredicted RBP18.25■□□□□ 0.51
VRK3-221ENST00000600284 RAB30Q15771 203 aa18.25■□□□□ 0.51
VRK3-221ENST00000600284 TSGA10IPQ3SY00 556 aa18.25■□□□□ 0.51
VRK3-221ENST00000600284 CELF3Q5SZQ8 465 aaKnown RBP18.25■□□□□ 0.51
VRK3-221ENST00000600284 OTOP2Q7RTS6 562 aa18.25■□□□□ 0.51
VRK3-221ENST00000600284 SGMS1Q86VZ5 419 aa18.25■□□□□ 0.51
VRK3-221ENST00000600284 SCLYQ96I15 445 aa18.25■□□□□ 0.51
VRK3-221ENST00000600284 PBX4Q9BYU1 374 aa18.25■□□□□ 0.51
VRK3-221ENST00000600284 ZNF576Q9H609 170 aa18.25■□□□□ 0.51
VRK3-221ENST00000600284 SLC12A7Q9Y666 1083 aa18.25■□□□□ 0.51
VRK3-221ENST00000600284 BAZ2BQ9UIF8 2168 aaKnown RBP18.25■□□□□ 0.51
VRK3-221ENST00000600284 PIK3CDO00329 1044 aa18.24■□□□□ 0.51
VRK3-221ENST00000600284 ICAM3P32942 547 aa18.24■□□□□ 0.51
VRK3-221ENST00000600284 PTGISQ16647 500 aa18.24■□□□□ 0.51
VRK3-221ENST00000600284 GNPTABQ3T906 1256 aa18.24■□□□□ 0.51
VRK3-221ENST00000600284 XRRA1Q6P2D8 792 aa18.24■□□□□ 0.51
VRK3-221ENST00000600284 SRBD1Q8N5C6 995 aaKnown RBP18.24■□□□□ 0.51
VRK3-221ENST00000600284 CCDC155Q8N6L0 562 aa18.24■□□□□ 0.51
VRK3-221ENST00000600284 IL31RAQ8NI17 732 aa18.24■□□□□ 0.51
VRK3-221ENST00000600284 CAGE1Q8TC20 777 aa18.24■□□□□ 0.51
VRK3-221ENST00000600284 CUL5Q93034 780 aa18.24■□□□□ 0.51
VRK3-221ENST00000600284 VWCEQ96DN2 955 aa18.24■□□□□ 0.51
VRK3-221ENST00000600284 CXXC1Q9P0U4 656 aaPredicted RBP18.24■□□□□ 0.51
VRK3-221ENST00000600284 MSRAQ9UJ68 235 aa18.24■□□□□ 0.51
VRK3-221ENST00000600284 HAS3O00219 553 aa18.23■□□□□ 0.51
VRK3-221ENST00000600284 CDC45O75419 566 aa18.23■□□□□ 0.51
VRK3-221ENST00000600284 GGPS1O95749 300 aa18.23■□□□□ 0.51
VRK3-221ENST00000600284 F2P00734 622 aa18.23■□□□□ 0.51
VRK3-221ENST00000600284 IQCF3P0C7M6 154 aa18.23■□□□□ 0.51
VRK3-221ENST00000600284 PSEN2P49810 448 aa18.23■□□□□ 0.51
VRK3-221ENST00000600284 C7orf31Q8N865 590 aa18.23■□□□□ 0.51
VRK3-221ENST00000600284 FANCBQ8NB91 859 aa18.23■□□□□ 0.51
VRK3-221ENST00000600284 SMARCC2Q8TAQ2 1214 aa18.23■□□□□ 0.51
VRK3-221ENST00000600284 PIBF1Q8WXW3 757 aa18.23■□□□□ 0.51
VRK3-221ENST00000600284 MYLIPQ8WY64 445 aa18.23■□□□□ 0.51
VRK3-221ENST00000600284 SPATA33Q96N06 139 aa18.23■□□□□ 0.51
VRK3-221ENST00000600284 INPP4AQ96PE3 977 aaPredicted RBP18.23■□□□□ 0.51
VRK3-221ENST00000600284 NEK1Q96PY6 1258 aa18.23■□□□□ 0.51
VRK3-221ENST00000600284 GTF2IRD1Q9UHL9 959 aa18.23■□□□□ 0.51
VRK3-221ENST00000600284 SLC4A7Q9Y6M7 1214 aa18.23■□□□□ 0.51
VRK3-221ENST00000600284 GRXCR1A8MXD5 290 aa18.22■□□□□ 0.51
VRK3-221ENST00000600284 PLEKHA8P1O95397 391 aa18.22■□□□□ 0.51
VRK3-221ENST00000600284 PARNO95453 639 aaKnown RBP18.22■□□□□ 0.51
VRK3-221ENST00000600284 ACTN1P12814 892 aa18.22■□□□□ 0.51
VRK3-221ENST00000600284 UBA1P22314 1058 aaKnown RBP18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms