RNA–Protein interactions for RNA: ENST00000573328.5

NPLOC4-212, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 2

Gene NPLOC4, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-212ENST00000573328 CREB3L3Q68CJ9 461 aa11.17□□□□□ -0.62
NPLOC4-212ENST00000573328 ZNF365Q70YC5 407 aa11.17□□□□□ -0.62
NPLOC4-212ENST00000573328 IGDCC4Q8TDY8 1250 aa11.17□□□□□ -0.62
NPLOC4-212ENST00000573328 AFG1LQ8WV93 481 aa11.17□□□□□ -0.62
NPLOC4-212ENST00000573328 RRP36Q96EU6 259 aaKnown RBP11.17□□□□□ -0.62
NPLOC4-212ENST00000573328 SCLYQ96I15 445 aa11.17□□□□□ -0.62
NPLOC4-212ENST00000573328 GUCD1Q96NT3 240 aa11.17□□□□□ -0.62
NPLOC4-212ENST00000573328 LY9Q9HBG7 655 aa11.17□□□□□ -0.62
NPLOC4-212ENST00000573328 MAP3K20Q9NYL2 800 aaKnown RBP11.17□□□□□ -0.62
NPLOC4-212ENST00000573328 ZBBXA8MT70 800 aa11.16□□□□□ -0.62
NPLOC4-212ENST00000573328 SH2B2O14492 632 aaPredicted RBP11.16□□□□□ -0.62
NPLOC4-212ENST00000573328 CYTH3O43739 400 aa11.16□□□□□ -0.62
NPLOC4-212ENST00000573328 FGBP02675 491 aa11.16□□□□□ -0.62
NPLOC4-212ENST00000573328 CASTP20810 708 aaKnown RBP11.16□□□□□ -0.62
NPLOC4-212ENST00000573328 CCND2P30279 289 aa11.16□□□□□ -0.62
NPLOC4-212ENST00000573328 ARHGAP1Q07960 439 aa11.16□□□□□ -0.62
NPLOC4-212ENST00000573328 PGM5Q15124 567 aa11.16□□□□□ -0.62
NPLOC4-212ENST00000573328 SLC35G1Q2M3R5 365 aa11.16□□□□□ -0.62
NPLOC4-212ENST00000573328 BMP2KLQ5H9B9 411 aa11.16□□□□□ -0.62
NPLOC4-212ENST00000573328 RNF20Q5VTR2 975 aa11.16□□□□□ -0.62
NPLOC4-212ENST00000573328 NFRKBQ6P4R8 1299 aa11.16□□□□□ -0.62
NPLOC4-212ENST00000573328 CCDC62Q6P9F0 684 aa11.16□□□□□ -0.62
NPLOC4-212ENST00000573328 OTOP2Q7RTS6 562 aa11.16□□□□□ -0.62
NPLOC4-212ENST00000573328 RAB11FIP4Q86YS3 637 aa11.16□□□□□ -0.62
NPLOC4-212ENST00000573328 DHX37Q8IY37 1157 aaKnown RBP11.16□□□□□ -0.62
NPLOC4-212ENST00000573328 SAMD3Q8N6K7 520 aa11.16□□□□□ -0.62
NPLOC4-212ENST00000573328 CUL5Q93034 780 aa11.16□□□□□ -0.62
NPLOC4-212ENST00000573328 TMEM87BQ96K49 555 aa11.16□□□□□ -0.62
NPLOC4-212ENST00000573328 PDCD2LQ9BRP1 358 aa11.16□□□□□ -0.62
NPLOC4-212ENST00000573328 LRRC2Q9BYS8 371 aa11.16□□□□□ -0.62
NPLOC4-212ENST00000573328 WNT8AQ9H1J5 351 aa11.16□□□□□ -0.62
NPLOC4-212ENST00000573328 SEMA6BQ9H3T3 888 aa11.16□□□□□ -0.62
NPLOC4-212ENST00000573328 EYSQ5T1H1 3165 aa11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 TMEM265A0A087WTH1 108 aa11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 CALM1P0DP23 149 aa11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 CALM2P0DP24 149 aa11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 CALM3P0DP25 149 aa11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 RXRAP19793 462 aa11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 GNAQP50148 359 aa11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 GHRHRQ02643 423 aa11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 PTPN11Q06124 597 aaPredicted RBP11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 DGKDQ16760 1214 aa11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 KCNV1Q6PIU1 500 aa11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 C16orf59Q7L2K0 433 aa11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 DEFB128Q7Z7B8 93 aa11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 RPUSD2Q8IZ73 545 aaKnown RBP11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 TMTC2Q8N394 836 aa11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 CCDC155Q8N6L0 562 aa11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 IL31RAQ8NI17 732 aa11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 SMARCC2Q8TAQ2 1214 aa11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 MYLIPQ8WY64 445 aa11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 TIFAQ96CG3 184 aa11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 ZFP91Q96JP5 570 aaPredicted RBP11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 MAP3K14Q99558 947 aa11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 CDX2Q99626 313 aaPredicted RBP11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 LZTS2Q9BRK4 669 aa11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 ALG1Q9BT22 464 aa11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 MTA3Q9BTC8 594 aa11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 KATNAL1Q9BW62 490 aa11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 SPZ1Q9BXG8 430 aa11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 TTYH1Q9H313 450 aaPredicted RBP11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 DDX41Q9UJV9 622 aaKnown RBP11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 SLC12A7Q9Y666 1083 aa11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 TET1Q8NFU7 2136 aa11.15□□□□□ -0.62
NPLOC4-212ENST00000573328 CDH23Q9H251 3354 aa11.14□□□□□ -0.63
NPLOC4-212ENST00000573328 PTPRSQ13332 1948 aa11.14□□□□□ -0.63
NPLOC4-212ENST00000573328 GRXCR1A8MXD5 290 aa11.14□□□□□ -0.63
NPLOC4-212ENST00000573328 CDC45O75419 566 aa11.14□□□□□ -0.63
NPLOC4-212ENST00000573328 PLEKHA8P1O95397 391 aa11.14□□□□□ -0.63
NPLOC4-212ENST00000573328 GGPS1O95749 300 aa11.14□□□□□ -0.63
NPLOC4-212ENST00000573328 ZNF286BP0CG31 522 aa11.14□□□□□ -0.63
NPLOC4-212ENST00000573328 FOSL2P15408 326 aa11.14□□□□□ -0.63
NPLOC4-212ENST00000573328 BFSP2Q13515 415 aa11.14□□□□□ -0.63
NPLOC4-212ENST00000573328 LAMC2Q13753 1193 aa11.14□□□□□ -0.63
NPLOC4-212ENST00000573328 PTGISQ16647 500 aa11.14□□□□□ -0.63
NPLOC4-212ENST00000573328 GNPTABQ3T906 1256 aa11.14□□□□□ -0.63
NPLOC4-212ENST00000573328 SYNE3Q6ZMZ3 975 aa11.14□□□□□ -0.63
NPLOC4-212ENST00000573328 MICU3Q86XE3 530 aa11.14□□□□□ -0.63
NPLOC4-212ENST00000573328 CCDC82Q8N4S0 544 aa11.14□□□□□ -0.63
NPLOC4-212ENST00000573328 RETREG2Q8NC44 543 aa11.14□□□□□ -0.63
NPLOC4-212ENST00000573328 PPTC7Q8NI37 304 aa11.14□□□□□ -0.63
NPLOC4-212ENST00000573328 HERVK_113Q902F9 699 aa11.14□□□□□ -0.63
NPLOC4-212ENST00000573328 CCDC136Q96JN2 1154 aa11.14□□□□□ -0.63
NPLOC4-212ENST00000573328 MSRAQ9UJ68 235 aa11.14□□□□□ -0.63
NPLOC4-212ENST00000573328 UNC80Q8N2C7 3258 aa11.13□□□□□ -0.63
NPLOC4-212ENST00000573328 NOP56O00567 594 aaKnown RBP11.13□□□□□ -0.63
NPLOC4-212ENST00000573328 PFKMP08237 780 aa11.13□□□□□ -0.63
NPLOC4-212ENST00000573328 ACTN1P12814 892 aa11.13□□□□□ -0.63
NPLOC4-212ENST00000573328 UBA1P22314 1058 aaKnown RBP11.13□□□□□ -0.63
NPLOC4-212ENST00000573328 PBX2P40425 430 aa11.13□□□□□ -0.63
NPLOC4-212ENST00000573328 LIFRP42702 1097 aa11.13□□□□□ -0.63
NPLOC4-212ENST00000573328 PSEN2P49810 448 aa11.13□□□□□ -0.63
NPLOC4-212ENST00000573328 NECTIN1Q15223 517 aa11.13□□□□□ -0.63
NPLOC4-212ENST00000573328 RAB30Q15771 203 aa11.13□□□□□ -0.63
NPLOC4-212ENST00000573328 VSIG10LQ86VR7 867 aa11.13□□□□□ -0.63
NPLOC4-212ENST00000573328 CMTR1Q8N1G2 835 aaKnown RBP11.13□□□□□ -0.63
NPLOC4-212ENST00000573328 C7orf31Q8N865 590 aa11.13□□□□□ -0.63
NPLOC4-212ENST00000573328 MAFAQ8NHW3 353 aaPredicted RBP11.13□□□□□ -0.63
NPLOC4-212ENST00000573328 EMID1Q96A84 441 aaPredicted RBP11.13□□□□□ -0.63
NPLOC4-212ENST00000573328 SPATA33Q96N06 139 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms