RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 KPNA6O60684 536 aa13.21□□□□□ -0.29
CLN3-226ENST00000567160 EFCAB14O75071 495 aa13.21□□□□□ -0.29
CLN3-226ENST00000567160 GJB5O95377 273 aa13.21□□□□□ -0.29
CLN3-226ENST00000567160 PTGS1P23219 599 aa13.21□□□□□ -0.29
CLN3-226ENST00000567160 PDE4BQ07343 736 aa13.21□□□□□ -0.29
CLN3-226ENST00000567160 NBPF20Q3BBV1 942 aa13.21□□□□□ -0.29
CLN3-226ENST00000567160 CNKSR3Q6P9H4 555 aa13.21□□□□□ -0.29
CLN3-226ENST00000567160 MFSD6Q6ZSS7 791 aa13.21□□□□□ -0.29
CLN3-226ENST00000567160 FBXO22Q8NEZ5 403 aa13.21□□□□□ -0.29
CLN3-226ENST00000567160 CAGE1Q8TC20 777 aa13.21□□□□□ -0.29
CLN3-226ENST00000567160 AFAP1L1Q8TED9 768 aa13.21□□□□□ -0.29
CLN3-226ENST00000567160 STAG1Q8WVM7 1258 aa13.21□□□□□ -0.29
CLN3-226ENST00000567160 KCNB2Q92953 911 aa13.21□□□□□ -0.29
CLN3-226ENST00000567160 MRPL38Q96DV4 380 aaKnown RBP13.21□□□□□ -0.29
CLN3-226ENST00000567160 PHOX2BQ99453 314 aa13.21□□□□□ -0.29
CLN3-226ENST00000567160 MKNK2Q9HBH9 465 aa13.21□□□□□ -0.29
CLN3-226ENST00000567160 SYNPO2Q9UMS6 1093 aa13.21□□□□□ -0.29
CLN3-226ENST00000567160 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.21□□□□□ -0.29
CLN3-226ENST00000567160 CFAP54Q96N23 3096 aa13.2□□□□□ -0.3
CLN3-226ENST00000567160 ABHD14A-ACY1A0A1B0GW23 586 aa13.2□□□□□ -0.3
CLN3-226ENST00000567160 C19orf67A6NJJ6 358 aa13.2□□□□□ -0.3
CLN3-226ENST00000567160 EP400NLQ6ZTU2 488 aa13.2□□□□□ -0.3
CLN3-226ENST00000567160 PABPC5Q96DU9 382 aaKnown RBP13.2□□□□□ -0.3
CLN3-226ENST00000567160 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.2□□□□□ -0.3
CLN3-226ENST00000567160 WDR11Q9BZH6 1224 aa13.2□□□□□ -0.3
CLN3-226ENST00000567160 RNF41Q9H4P4 317 aaPredicted RBP13.2□□□□□ -0.3
CLN3-226ENST00000567160 CLIP2Q9UDT6 1046 aa13.2□□□□□ -0.3
CLN3-226ENST00000567160 B4E1Z4 1266 aa13.19□□□□□ -0.3
CLN3-226ENST00000567160 ORC4O43929 436 aa13.19□□□□□ -0.3
CLN3-226ENST00000567160 RANBP6O60518 1105 aaKnown RBP13.19□□□□□ -0.3
CLN3-226ENST00000567160 RASA1P20936 1047 aa13.19□□□□□ -0.3
CLN3-226ENST00000567160 STAT2P52630 851 aa13.19□□□□□ -0.3
CLN3-226ENST00000567160 DEFB103AP81534 67 aa13.19□□□□□ -0.3
CLN3-226ENST00000567160 TRDNQ13061 729 aa13.19□□□□□ -0.3
CLN3-226ENST00000567160 ADCK5Q3MIX3 580 aa13.19□□□□□ -0.3
CLN3-226ENST00000567160 TSGA10IPQ3SY00 556 aa13.19□□□□□ -0.3
CLN3-226ENST00000567160 HERC4Q5GLZ8 1057 aaPredicted RBP13.19□□□□□ -0.3
CLN3-226ENST00000567160 TMCO2Q7Z6W1 182 aaPredicted RBP13.19□□□□□ -0.3
CLN3-226ENST00000567160 RALYLQ86SE5 291 aaKnown RBP13.19□□□□□ -0.3
CLN3-226ENST00000567160 GMCL1P1Q8NEA9 526 aa13.19□□□□□ -0.3
CLN3-226ENST00000567160 PRSS33Q8NF86 280 aa13.19□□□□□ -0.3
CLN3-226ENST00000567160 OR6J1Q8NGC5 347 aa13.19□□□□□ -0.3
CLN3-226ENST00000567160 JAKMIP1Q96N16 626 aaKnown RBP13.19□□□□□ -0.3
CLN3-226ENST00000567160 TBC1D32Q96NH3 1257 aa13.19□□□□□ -0.3
CLN3-226ENST00000567160 TRERF1Q96PN7 1200 aa13.19□□□□□ -0.3
CLN3-226ENST00000567160 IRF2BPLQ9H1B7 796 aa13.19□□□□□ -0.3
CLN3-226ENST00000567160 ZNF287Q9HBT7 754 aa13.19□□□□□ -0.3
CLN3-226ENST00000567160 ISY1Q9ULR0 285 aaKnown RBP13.19□□□□□ -0.3
CLN3-226ENST00000567160 INSL6Q9Y581 213 aa13.19□□□□□ -0.3
CLN3-226ENST00000567160 NCK2O43639 380 aa13.18□□□□□ -0.3
CLN3-226ENST00000567160 GFRA3O60609 400 aa13.18□□□□□ -0.3
CLN3-226ENST00000567160 KDM4AO75164 1064 aa13.18□□□□□ -0.3
CLN3-226ENST00000567160 BMP3P12645 472 aa13.18□□□□□ -0.3
CLN3-226ENST00000567160 ALAS1P13196 640 aa13.18□□□□□ -0.3
CLN3-226ENST00000567160 CPA1P15085 419 aa13.18□□□□□ -0.3
CLN3-226ENST00000567160 SELPP16109 830 aa13.18□□□□□ -0.3
CLN3-226ENST00000567160 RBM25P49756 843 aaKnown RBP13.18□□□□□ -0.3
CLN3-226ENST00000567160 IKQ13123 557 aaPredicted RBP13.18□□□□□ -0.3
CLN3-226ENST00000567160 KRT32Q14532 448 aa13.18□□□□□ -0.3
CLN3-226ENST00000567160 PTGISQ16647 500 aa13.18□□□□□ -0.3
CLN3-226ENST00000567160 LRRC8DQ7L1W4 858 aa13.18□□□□□ -0.3
CLN3-226ENST00000567160 BMP8AQ7Z5Y6 402 aa13.18□□□□□ -0.3
CLN3-226ENST00000567160 FAM160B2Q86V87 743 aa13.18□□□□□ -0.3
CLN3-226ENST00000567160 SUGP1Q8IWZ8 645 aaKnown RBP13.18□□□□□ -0.3
CLN3-226ENST00000567160 ZNF444Q8N0Y2 327 aaPredicted RBP13.18□□□□□ -0.3
CLN3-226ENST00000567160 BANK1Q8NDB2 785 aa13.18□□□□□ -0.3
CLN3-226ENST00000567160 NCOA7Q8NI08 942 aa13.18□□□□□ -0.3
CLN3-226ENST00000567160 MORC4Q8TE76 937 aa13.18□□□□□ -0.3
CLN3-226ENST00000567160 CHURC1Q8WUH1 139 aa13.18□□□□□ -0.3
CLN3-226ENST00000567160 SAMD11Q96NU1 681 aa13.18□□□□□ -0.3
CLN3-226ENST00000567160 KRT23Q9C075 422 aa13.18□□□□□ -0.3
CLN3-226ENST00000567160 CNNM2Q9H8M5 875 aa13.18□□□□□ -0.3
CLN3-226ENST00000567160 CYP39A1Q9NYL5 469 aa13.18□□□□□ -0.3
CLN3-226ENST00000567160 ADD3Q9UEY8 706 aaKnown RBP13.18□□□□□ -0.3
CLN3-226ENST00000567160 TECTAO75443 2155 aa13.18□□□□□ -0.3
CLN3-226ENST00000567160 TRIOO75962 3097 aa13.17□□□□□ -0.3
CLN3-226ENST00000567160 LOC102724159A0A0B4J2E5 919 aa13.17□□□□□ -0.3
CLN3-226ENST00000567160 TSPY2A6NKD2 308 aa13.17□□□□□ -0.3
CLN3-226ENST00000567160 NKRFO15226 690 aaKnown RBP eCLIP13.17□□□□□ -0.3
CLN3-226ENST00000567160 FGRP09769 529 aa13.17□□□□□ -0.3
CLN3-226ENST00000567160 PCP11498 1178 aaKnown RBP13.17□□□□□ -0.3
CLN3-226ENST00000567160 CASTP20810 708 aaKnown RBP13.17□□□□□ -0.3
CLN3-226ENST00000567160 IRS1P35568 1242 aa13.17□□□□□ -0.3
CLN3-226ENST00000567160 ANAPC15P60006 121 aa13.17□□□□□ -0.3
CLN3-226ENST00000567160 TFAP4Q01664 338 aa13.17□□□□□ -0.3
CLN3-226ENST00000567160 COL9A3Q14050 684 aaPredicted RBP13.17□□□□□ -0.3
CLN3-226ENST00000567160 IKBKEQ14164 716 aa13.17□□□□□ -0.3
CLN3-226ENST00000567160 PWP2Q15269 919 aaKnown RBP13.17□□□□□ -0.3
CLN3-226ENST00000567160 TMEM63BQ5T3F8 832 aa13.17□□□□□ -0.3
CLN3-226ENST00000567160 ANKS1AQ92625 1134 aa13.17□□□□□ -0.3
CLN3-226ENST00000567160 ESR2Q92731 530 aa13.17□□□□□ -0.3
CLN3-226ENST00000567160 MKL1Q969V6 931 aa13.17□□□□□ -0.3
CLN3-226ENST00000567160 NEK1Q96PY6 1258 aa13.17□□□□□ -0.3
CLN3-226ENST00000567160 MUTYHQ9UIF7 546 aa13.17□□□□□ -0.3
CLN3-226ENST00000567160 SPTBN4Q9H254 2564 aa13.16□□□□□ -0.3
CLN3-226ENST00000567160 TMEM232C9JQI7 657 aa13.16□□□□□ -0.3
CLN3-226ENST00000567160 TTLL1O95922 423 aa13.16□□□□□ -0.3
CLN3-226ENST00000567160 CXCL10P02778 98 aa13.16□□□□□ -0.3
CLN3-226ENST00000567160 TSPY3P0CV98 308 aa13.16□□□□□ -0.3
CLN3-226ENST00000567160 TSPY8P0CW00 308 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms