RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 SPECC1Q5M775 1068 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 FAM83BQ5T0W9 1011 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 TTBK2Q6IQ55 1244 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 CCDC84Q86UT8 332 aaPredicted RBP8.4□□□□□ -1.06
VPS39-204ENST00000561818 PPFIBP1Q86W92 1011 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 LRRC8AQ8IWT6 810 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 SULF1Q8IWU6 871 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 GUF1Q8N442 669 aaKnown RBP8.4□□□□□ -1.06
VPS39-204ENST00000561818 RAD54LQ92698 747 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 KIFC2Q96AC6 838 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 DCPSQ96C86 337 aaKnown RBP8.4□□□□□ -1.06
VPS39-204ENST00000561818 TEPSINQ96N21 525 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 PDGFDQ9GZP0 370 aaPredicted RBP8.4□□□□□ -1.06
VPS39-204ENST00000561818 TMEM60Q9H2L4 133 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 SLC38A10Q9HBR0 1119 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 TBC1D22BQ9NU19 505 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 HOXC10Q9NYD6 342 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 IFNKQ9P0W0 207 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 CCPG1Q9ULG6 757 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 PPP1R9AQ9ULJ8 1098 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 DAAM1Q9Y4D1 1078 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 CSADQ9Y600 493 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 GJA3Q9Y6H8 435 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.4□□□□□ -1.06
VPS39-204ENST00000561818 DOCK1Q14185 1865 aa8.4□□□□□ -1.07
VPS39-204ENST00000561818 COL4A5P29400 1685 aa8.4□□□□□ -1.07
VPS39-204ENST00000561818 LOXHD1Q8IVV2 1947 aa8.39□□□□□ -1.07
VPS39-204ENST00000561818 FRMPD4Q14CM0 1322 aa8.39□□□□□ -1.07
VPS39-204ENST00000561818 A0A1B0GTH6 734 aa8.39□□□□□ -1.07
VPS39-204ENST00000561818 A0A1W2PQC6 194 aa8.39□□□□□ -1.07
VPS39-204ENST00000561818 A0A1W2PRG0 241 aa8.39□□□□□ -1.07
VPS39-204ENST00000561818 HAX1O00165 279 aa8.39□□□□□ -1.07
VPS39-204ENST00000561818 ARHGAP6O43182 974 aa8.39□□□□□ -1.07
VPS39-204ENST00000561818 STX10O60499 249 aa8.39□□□□□ -1.07
VPS39-204ENST00000561818 OFD1O75665 1012 aa8.39□□□□□ -1.07
VPS39-204ENST00000561818 CCNE1P24864 410 aa8.39□□□□□ -1.07
VPS39-204ENST00000561818 SFNP31947 248 aa8.39□□□□□ -1.07
VPS39-204ENST00000561818 CCT6AP40227 531 aaKnown RBP8.39□□□□□ -1.07
VPS39-204ENST00000561818 IREB2P48200 963 aaKnown RBP8.39□□□□□ -1.07
VPS39-204ENST00000561818 PDE4DQ08499 809 aa8.39□□□□□ -1.07
VPS39-204ENST00000561818 PPP2R5CQ13362 524 aa8.39□□□□□ -1.07
VPS39-204ENST00000561818 CEP55Q53EZ4 464 aa8.39□□□□□ -1.07
VPS39-204ENST00000561818 NAALADL2Q58DX5 795 aa8.39□□□□□ -1.07
VPS39-204ENST00000561818 FKBP15Q5T1M5 1219 aa8.39□□□□□ -1.07
VPS39-204ENST00000561818 CDKAL1Q5VV42 579 aa8.39□□□□□ -1.07
VPS39-204ENST00000561818 USP50Q70EL3 339 aaPredicted RBP8.39□□□□□ -1.07
VPS39-204ENST00000561818 CCDC186Q7Z3E2 898 aa8.39□□□□□ -1.07
VPS39-204ENST00000561818 VSTM4Q8IW00 320 aa8.39□□□□□ -1.07
VPS39-204ENST00000561818 ADSSL1Q8N142 457 aa8.39□□□□□ -1.07
VPS39-204ENST00000561818 GOLGA5Q8TBA6 731 aa8.39□□□□□ -1.07
VPS39-204ENST00000561818 ETNPPLQ8TBG4 499 aa8.39□□□□□ -1.07
VPS39-204ENST00000561818 KIAA1524Q8TCG1 905 aa8.39□□□□□ -1.07
VPS39-204ENST00000561818 PANX2Q96RD6 677 aa8.39□□□□□ -1.07
VPS39-204ENST00000561818 XPO4Q9C0E2 1151 aaKnown RBP8.39□□□□□ -1.07
VPS39-204ENST00000561818 NUCKS1Q9H1E3 243 aaKnown RBP8.39□□□□□ -1.07
VPS39-204ENST00000561818 LIMA1Q9UHB6 759 aaKnown RBP8.39□□□□□ -1.07
VPS39-204ENST00000561818 PAXBP1Q9Y5B6 917 aa8.39□□□□□ -1.07
VPS39-204ENST00000561818 A0A087X0B3 334 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 SPDYE4A6NLX3 237 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 FAM196BA6NMK8 535 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 USP17L15C9J2P7 530 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 USP17L13C9JLJ4 530 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 USP17L11C9JVI0 530 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 USP17L18D6R9N7 530 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 USP17L22D6RA61 530 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 USP17L17D6RBQ6 530 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 USP17L19D6RCP7 530 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 USP17L20D6RJB6 530 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 SLC37A4O43826 429 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 GRIN3BO60391 1043 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 GAS7O60861 476 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 FLOT1O75955 427 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 TDP2O95551 362 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 PRR29P0C7W0 189 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 VEGFAP15692 232 aaPredicted RBP8.38□□□□□ -1.07
VPS39-204ENST00000561818 DNM2P50570 870 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 JAK3P52333 1124 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 SNRPFP62306 86 aaKnown RBP8.38□□□□□ -1.07
VPS39-204ENST00000561818 USP17L24Q0WX57 530 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 NOLC1Q14978 699 aaKnown RBP eCLIP8.38□□□□□ -1.07
VPS39-204ENST00000561818 IL17AQ16552 155 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 UBE2SQ16763 222 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 USH1GQ495M9 461 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 KMT5BQ4FZB7 885 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 PRR16Q569H4 304 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 SH3D19Q5HYK7 790 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 DNTTIP2Q5QJE6 756 aaKnown RBP8.38□□□□□ -1.07
VPS39-204ENST00000561818 PCNX4Q63HM2 1172 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 CHADLQ6NUI6 762 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 USP49Q70CQ1 688 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 NLRX1Q86UT6 975 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 LDHDQ86WU2 507 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 CLEC10AQ8IUN9 316 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 ZNF397Q8NF99 534 aaPredicted RBP8.38□□□□□ -1.07
VPS39-204ENST00000561818 SP7Q8TDD2 431 aaPredicted RBP8.38□□□□□ -1.07
VPS39-204ENST00000561818 NELFBQ8WX92 580 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 P2RX5Q93086 422 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 L3MBTL3Q96JM7 780 aaPredicted RBP8.38□□□□□ -1.07
VPS39-204ENST00000561818 TRIM47Q96LD4 638 aa8.38□□□□□ -1.07
VPS39-204ENST00000561818 CEP63Q96MT8 703 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms