RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 ZSWIM5Q9P217 1185 aa19.22■□□□□ 0.67
CLN3-208ENST00000561505 LAMA4Q16363 1823 aa19.21■□□□□ 0.67
CLN3-208ENST00000561505 RFXAPO00287 272 aa19.21■□□□□ 0.67
CLN3-208ENST00000561505 OPLAHO14841 1288 aa19.21■□□□□ 0.67
CLN3-208ENST00000561505 KDM4AO75164 1064 aa19.21■□□□□ 0.67
CLN3-208ENST00000561505 EIF3JO75822 258 aaKnown RBP19.21■□□□□ 0.67
CLN3-208ENST00000561505 HSD17B4P51659 736 aa19.21■□□□□ 0.67
CLN3-208ENST00000561505 QRICH1Q2TAL8 776 aa19.21■□□□□ 0.67
CLN3-208ENST00000561505 TRAF7Q6Q0C0 670 aa19.21■□□□□ 0.67
CLN3-208ENST00000561505 CCDC155Q8N6L0 562 aa19.21■□□□□ 0.67
CLN3-208ENST00000561505 ENAHQ8N8S7 591 aaPredicted RBP19.21■□□□□ 0.67
CLN3-208ENST00000561505 RMDN3Q96TC7 470 aa19.21■□□□□ 0.67
CLN3-208ENST00000561505 LNPKQ9C0E8 428 aa19.21■□□□□ 0.67
CLN3-208ENST00000561505 MAP3K20Q9NYL2 800 aaKnown RBP19.21■□□□□ 0.67
CLN3-208ENST00000561505 GTF2IRD1Q9UHL9 959 aa19.21■□□□□ 0.67
CLN3-208ENST00000561505 COG5Q9UP83 839 aa19.21■□□□□ 0.67
CLN3-208ENST00000561505 MRPL11Q9Y3B7 192 aaKnown RBP19.21■□□□□ 0.67
CLN3-208ENST00000561505 KIAA1217Q5T5P2 1943 aa19.21■□□□□ 0.67
CLN3-208ENST00000561505 PTPRSQ13332 1948 aa19.2■□□□□ 0.66
CLN3-208ENST00000561505 TRIM6-TRIM34B2RNG4 842 aa19.2■□□□□ 0.66
CLN3-208ENST00000561505 KIF28PB7ZC32 967 aa19.2■□□□□ 0.66
CLN3-208ENST00000561505 SELPP16109 830 aa19.2■□□□□ 0.66
CLN3-208ENST00000561505 CASTP20810 708 aaKnown RBP19.2■□□□□ 0.66
CLN3-208ENST00000561505 TFF2Q03403 129 aa19.2■□□□□ 0.66
CLN3-208ENST00000561505 TRIM71Q2Q1W2 868 aaKnown RBP19.2■□□□□ 0.66
CLN3-208ENST00000561505 SAMD3Q8N6K7 520 aa19.2■□□□□ 0.66
CLN3-208ENST00000561505 KAT14Q9H8E8 782 aa19.2■□□□□ 0.66
CLN3-208ENST00000561505 LMCD1Q9NZU5 365 aa19.2■□□□□ 0.66
CLN3-208ENST00000561505 GTPBP6O43824 516 aaPredicted RBP19.19■□□□□ 0.66
CLN3-208ENST00000561505 RGS20O76081 388 aa19.19■□□□□ 0.66
CLN3-208ENST00000561505 F2P00734 622 aa19.19■□□□□ 0.66
CLN3-208ENST00000561505 NR3C2P08235 984 aa19.19■□□□□ 0.66
CLN3-208ENST00000561505 WDR5P61964 334 aaKnown RBP19.19■□□□□ 0.66
CLN3-208ENST00000561505 MKRN4PQ13434 485 aaPredicted RBP19.19■□□□□ 0.66
CLN3-208ENST00000561505 DGKDQ16760 1214 aa19.19■□□□□ 0.66
CLN3-208ENST00000561505 SEPT14Q6ZU15 432 aa19.19■□□□□ 0.66
CLN3-208ENST00000561505 STOX1Q6ZVD7 989 aa19.19■□□□□ 0.66
CLN3-208ENST00000561505 FBXO11Q86XK2 927 aa19.19■□□□□ 0.66
CLN3-208ENST00000561505 RILPL2Q969X0 211 aa19.19■□□□□ 0.66
CLN3-208ENST00000561505 FTOQ9C0B1 505 aaKnown RBP eCLIP19.19■□□□□ 0.66
CLN3-208ENST00000561505 B4E1Z4 1266 aa19.18■□□□□ 0.66
CLN3-208ENST00000561505 TLL1O43897 1013 aa19.18■□□□□ 0.66
CLN3-208ENST00000561505 NBNO60934 754 aa19.18■□□□□ 0.66
CLN3-208ENST00000561505 CKBP12277 381 aa19.18■□□□□ 0.66
CLN3-208ENST00000561505 NUCB1Q02818 461 aa19.18■□□□□ 0.66
CLN3-208ENST00000561505 PTK7Q13308 1070 aa19.18■□□□□ 0.66
CLN3-208ENST00000561505 GRB10Q13322 594 aa19.18■□□□□ 0.66
CLN3-208ENST00000561505 LAMC2Q13753 1193 aa19.18■□□□□ 0.66
CLN3-208ENST00000561505 CNKSR3Q6P9H4 555 aa19.18■□□□□ 0.66
CLN3-208ENST00000561505 LRRC8DQ7L1W4 858 aa19.18■□□□□ 0.66
CLN3-208ENST00000561505 CHD1LQ86WJ1 897 aa19.18■□□□□ 0.66
CLN3-208ENST00000561505 PPTC7Q8NI37 304 aa19.18■□□□□ 0.66
CLN3-208ENST00000561505 PXMP2Q9NR77 195 aa19.18■□□□□ 0.66
CLN3-208ENST00000561505 HDAC6Q9UBN7 1215 aa19.18■□□□□ 0.66
CLN3-208ENST00000561505 NOD1Q9Y239 953 aa19.18■□□□□ 0.66
CLN3-208ENST00000561505 TRIP12Q14669 1992 aaPredicted RBP19.18■□□□□ 0.66
CLN3-208ENST00000561505 ABHD14A-ACY1A0A1B0GW23 586 aa19.17■□□□□ 0.66
CLN3-208ENST00000561505 PPFIA4O75335 1185 aa19.17■□□□□ 0.66
CLN3-208ENST00000561505 PSEN2P49810 448 aa19.17■□□□□ 0.66
CLN3-208ENST00000561505 SEC23AQ15436 765 aa19.17■□□□□ 0.66
CLN3-208ENST00000561505 TCTN1Q2MV58 587 aa19.17■□□□□ 0.66
CLN3-208ENST00000561505 KATNAL1Q9BW62 490 aa19.17■□□□□ 0.66
CLN3-208ENST00000561505 CERS4Q9HA82 394 aa19.17■□□□□ 0.66
CLN3-208ENST00000561505 HIP1O00291 1037 aa19.16■□□□□ 0.66
CLN3-208ENST00000561505 PPP1R11O60927 126 aaPredicted RBP19.16■□□□□ 0.66
CLN3-208ENST00000561505 EFCAB14O75071 495 aa19.16■□□□□ 0.66
CLN3-208ENST00000561505 GJB5O95377 273 aa19.16■□□□□ 0.66
CLN3-208ENST00000561505 PARP1P09874 1014 aaKnown RBP19.16■□□□□ 0.66
CLN3-208ENST00000561505 HOXC8P31273 242 aa19.16■□□□□ 0.66
CLN3-208ENST00000561505 KCNQ1P51787 676 aa19.16■□□□□ 0.66
CLN3-208ENST00000561505 ARHGEF16Q5VV41 709 aa19.16■□□□□ 0.66
CLN3-208ENST00000561505 MYSM1Q5VVJ2 828 aa19.16■□□□□ 0.66
CLN3-208ENST00000561505 KRT40Q6A162 431 aa19.16■□□□□ 0.66
CLN3-208ENST00000561505 KCNV1Q6PIU1 500 aa19.16■□□□□ 0.66
CLN3-208ENST00000561505 CWC27Q6UX04 472 aaKnown RBP19.16■□□□□ 0.66
CLN3-208ENST00000561505 SPRED2Q7Z698 418 aa19.16■□□□□ 0.66
CLN3-208ENST00000561505 VSIG10LQ86VR7 867 aa19.16■□□□□ 0.66
CLN3-208ENST00000561505 ARNTL2Q8WYA1 636 aa19.16■□□□□ 0.66
CLN3-208ENST00000561505 PDCD2LQ9BRP1 358 aa19.16■□□□□ 0.66
CLN3-208ENST00000561505 AMNQ9BXJ7 453 aa19.16■□□□□ 0.66
CLN3-208ENST00000561505 KRT23Q9C075 422 aa19.16■□□□□ 0.66
CLN3-208ENST00000561505 RWDD1Q9H446 243 aaPredicted RBP19.16■□□□□ 0.66
CLN3-208ENST00000561505 LCHNA4D1U4 455 aa19.15■□□□□ 0.66
CLN3-208ENST00000561505 PALM3A6NDB9 673 aaPredicted RBP19.15■□□□□ 0.66
CLN3-208ENST00000561505 TGFB3P10600 412 aa19.15■□□□□ 0.66
CLN3-208ENST00000561505 KCNJ6P48051 423 aa19.15■□□□□ 0.66
CLN3-208ENST00000561505 ERVK-21P61565 698 aa19.15■□□□□ 0.66
CLN3-208ENST00000561505 MBTPS1Q14703 1052 aa19.15■□□□□ 0.66
CLN3-208ENST00000561505 STAG2Q8N3U4 1231 aa19.15■□□□□ 0.66
CLN3-208ENST00000561505 IL27Q8NEV9 243 aa19.15■□□□□ 0.66
CLN3-208ENST00000561505 NECAB3Q96P71 396 aaPredicted RBP19.15■□□□□ 0.66
CLN3-208ENST00000561505 RAD9AQ99638 391 aa19.15■□□□□ 0.66
CLN3-208ENST00000561505 CNNM2Q9H8M5 875 aa19.15■□□□□ 0.66
CLN3-208ENST00000561505 CTNNA3Q9UI47 895 aa19.15■□□□□ 0.66
CLN3-208ENST00000561505 IGHDP01880 384 aa19.14■□□□□ 0.65
CLN3-208ENST00000561505 EIF2AK2P19525 551 aaKnown RBP19.14■□□□□ 0.65
CLN3-208ENST00000561505 DEFB103AP81534 67 aa19.14■□□□□ 0.65
CLN3-208ENST00000561505 HIC1Q14526 733 aa19.14■□□□□ 0.65
CLN3-208ENST00000561505 MFSD10Q14728 455 aa19.14■□□□□ 0.65
CLN3-208ENST00000561505 IMMTQ16891 758 aaKnown RBP19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms