RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 NECTIN1Q15223 517 aa11.75□□□□□ -0.53
USP3-207ENST00000558218 USH1GQ495M9 461 aa11.75□□□□□ -0.53
USP3-207ENST00000558218 RNF20Q5VTR2 975 aa11.75□□□□□ -0.53
USP3-207ENST00000558218 ADGRD1Q6QNK2 874 aa11.75□□□□□ -0.53
USP3-207ENST00000558218 CASC1Q6TDU7 716 aa11.75□□□□□ -0.53
USP3-207ENST00000558218 SLC30A10Q6XR72 485 aa11.75□□□□□ -0.53
USP3-207ENST00000558218 EEPD1Q7L9B9 569 aa11.75□□□□□ -0.53
USP3-207ENST00000558218 CATIPQ7Z7H3 387 aa11.75□□□□□ -0.53
USP3-207ENST00000558218 STAG2Q8N3U4 1231 aa11.75□□□□□ -0.53
USP3-207ENST00000558218 SYTL5Q8TDW5 730 aaPredicted RBP11.75□□□□□ -0.53
USP3-207ENST00000558218 BADQ92934 168 aa11.75□□□□□ -0.53
USP3-207ENST00000558218 TMEM87BQ96K49 555 aa11.75□□□□□ -0.53
USP3-207ENST00000558218 PURBQ96QR8 312 aaKnown RBP11.75□□□□□ -0.53
USP3-207ENST00000558218 LZTS2Q9BRK4 669 aa11.75□□□□□ -0.53
USP3-207ENST00000558218 LSG1Q9H089 658 aaKnown RBP11.75□□□□□ -0.53
USP3-207ENST00000558218 CPVLQ9H3G5 476 aa11.75□□□□□ -0.53
USP3-207ENST00000558218 PRDM5Q9NQX1 630 aaPredicted RBP11.75□□□□□ -0.53
USP3-207ENST00000558218 POLR3EQ9NVU0 708 aa11.75□□□□□ -0.53
USP3-207ENST00000558218 TIMP1P01033 207 aa11.74□□□□□ -0.53
USP3-207ENST00000558218 KIF5BP33176 963 aa11.74□□□□□ -0.53
USP3-207ENST00000558218 LIFRP42702 1097 aa11.74□□□□□ -0.53
USP3-207ENST00000558218 GNAQP50148 359 aa11.74□□□□□ -0.53
USP3-207ENST00000558218 NBR1Q14596 966 aa11.74□□□□□ -0.53
USP3-207ENST00000558218 TTLL4Q14679 1199 aa11.74□□□□□ -0.53
USP3-207ENST00000558218 STXBP2Q15833 593 aa11.74□□□□□ -0.53
USP3-207ENST00000558218 TMEM67Q5HYA8 995 aa11.74□□□□□ -0.53
USP3-207ENST00000558218 FAM109BQ6ICB4 259 aaPredicted RBP11.74□□□□□ -0.53
USP3-207ENST00000558218 STOX1Q6ZVD7 989 aa11.74□□□□□ -0.53
USP3-207ENST00000558218 SH3RF1Q7Z6J0 888 aa11.74□□□□□ -0.53
USP3-207ENST00000558218 FBXO16Q8IX29 292 aaPredicted RBP11.74□□□□□ -0.53
USP3-207ENST00000558218 MB21D2Q8IYB1 491 aaPredicted RBP11.74□□□□□ -0.53
USP3-207ENST00000558218 PCDHA1Q9Y5I3 950 aa11.74□□□□□ -0.53
USP3-207ENST00000558218 LCTP09848 1927 aa11.74□□□□□ -0.53
USP3-207ENST00000558218 MYH6P13533 1939 aa11.74□□□□□ -0.53
USP3-207ENST00000558218 PNMA6FA0A0J9YX94 578 aa11.73□□□□□ -0.53
USP3-207ENST00000558218 A6NJR5 290 aa11.73□□□□□ -0.53
USP3-207ENST00000558218 SOX1O00570 391 aaPredicted RBP11.73□□□□□ -0.53
USP3-207ENST00000558218 EIF3JO75822 258 aaKnown RBP11.73□□□□□ -0.53
USP3-207ENST00000558218 DDAH1O94760 285 aa11.73□□□□□ -0.53
USP3-207ENST00000558218 CD4P01730 458 aa11.73□□□□□ -0.53
USP3-207ENST00000558218 CALM1P0DP23 149 aa11.73□□□□□ -0.53
USP3-207ENST00000558218 CALM2P0DP24 149 aa11.73□□□□□ -0.53
USP3-207ENST00000558218 CALM3P0DP25 149 aa11.73□□□□□ -0.53
USP3-207ENST00000558218 HSD17B4P51659 736 aa11.73□□□□□ -0.53
USP3-207ENST00000558218 BEX3Q00994 111 aa11.73□□□□□ -0.53
USP3-207ENST00000558218 ITGA7Q13683 1181 aa11.73□□□□□ -0.53
USP3-207ENST00000558218 PPP2R5BQ15173 497 aa11.73□□□□□ -0.53
USP3-207ENST00000558218 TSGA10IPQ3SY00 556 aa11.73□□□□□ -0.53
USP3-207ENST00000558218 MFSD5Q6N075 450 aa11.73□□□□□ -0.53
USP3-207ENST00000558218 TYW1BQ6NUM6 668 aa11.73□□□□□ -0.53
USP3-207ENST00000558218 KCNV1Q6PIU1 500 aa11.73□□□□□ -0.53
USP3-207ENST00000558218 CXCL17Q6UXB2 119 aa11.73□□□□□ -0.53
USP3-207ENST00000558218 FAM126BQ8IXS8 530 aa11.73□□□□□ -0.53
USP3-207ENST00000558218 TBC1D5Q92609 795 aa11.73□□□□□ -0.53
USP3-207ENST00000558218 TAAR1Q96RJ0 339 aa11.73□□□□□ -0.53
USP3-207ENST00000558218 RMDN3Q96TC7 470 aa11.73□□□□□ -0.53
USP3-207ENST00000558218 TBX21Q9UL17 535 aa11.73□□□□□ -0.53
USP3-207ENST00000558218 LTBP2Q14767 1821 aa11.72□□□□□ -0.53
USP3-207ENST00000558218 SLC27A2O14975 620 aa11.72□□□□□ -0.53
USP3-207ENST00000558218 SUPT20HL2P0C7V6 817 aa11.72□□□□□ -0.53
USP3-207ENST00000558218 TXNP10599 105 aaKnown RBP11.72□□□□□ -0.53
USP3-207ENST00000558218 ANTXR2P58335 489 aa11.72□□□□□ -0.53
USP3-207ENST00000558218 FPGSQ05932 587 aa11.72□□□□□ -0.53
USP3-207ENST00000558218 SHHQ15465 462 aa11.72□□□□□ -0.53
USP3-207ENST00000558218 ARHGEF16Q5VV41 709 aa11.72□□□□□ -0.53
USP3-207ENST00000558218 CREB3L3Q68CJ9 461 aa11.72□□□□□ -0.53
USP3-207ENST00000558218 CCDC62Q6P9F0 684 aa11.72□□□□□ -0.53
USP3-207ENST00000558218 CTCFLQ8NI51 663 aaPredicted RBP11.72□□□□□ -0.53
USP3-207ENST00000558218 RANBP2P49792 3224 aaKnown RBP11.71□□□□□ -0.53
USP3-207ENST00000558218 PRC1O43663 620 aa11.71□□□□□ -0.53
USP3-207ENST00000558218 CYTH3O43739 400 aa11.71□□□□□ -0.53
USP3-207ENST00000558218 CFBP00751 764 aa11.71□□□□□ -0.53
USP3-207ENST00000558218 NR3C2P08235 984 aa11.71□□□□□ -0.53
USP3-207ENST00000558218 TGFB3P10600 412 aa11.71□□□□□ -0.53
USP3-207ENST00000558218 COL9A1P20849 921 aa11.71□□□□□ -0.53
USP3-207ENST00000558218 ITGB8P26012 769 aa11.71□□□□□ -0.53
USP3-207ENST00000558218 PURAQ00577 322 aaKnown RBP11.71□□□□□ -0.53
USP3-207ENST00000558218 PTPN11Q06124 597 aaPredicted RBP11.71□□□□□ -0.53
USP3-207ENST00000558218 PPIGQ13427 754 aaKnown RBP eCLIP11.71□□□□□ -0.535e-13■■□□□ 13.9
USP3-207ENST00000558218 CHST3Q7LGC8 479 aa11.71□□□□□ -0.53
USP3-207ENST00000558218 TEX2Q8IWB9 1127 aa11.71□□□□□ -0.53
USP3-207ENST00000558218 TMEM199Q8N511 208 aa11.71□□□□□ -0.53
USP3-207ENST00000558218 OR6J1Q8NGC5 347 aa11.71□□□□□ -0.53
USP3-207ENST00000558218 RNF166Q96A37 237 aaPredicted RBP11.71□□□□□ -0.53
USP3-207ENST00000558218 LRCH3Q96II8 777 aa11.71□□□□□ -0.53
USP3-207ENST00000558218 PIGSQ96S52 555 aa11.71□□□□□ -0.53
USP3-207ENST00000558218 MTG1Q9BT17 334 aaPredicted RBP11.71□□□□□ -0.53
USP3-207ENST00000558218 SPZ1Q9BXG8 430 aa11.71□□□□□ -0.53
USP3-207ENST00000558218 LY9Q9HBG7 655 aa11.71□□□□□ -0.53
USP3-207ENST00000558218 ANO2Q9NQ90 1003 aa11.71□□□□□ -0.53
USP3-207ENST00000558218 PXMP2Q9NR77 195 aa11.71□□□□□ -0.53
USP3-207ENST00000558218 COL20A1Q9P218 1284 aa11.71□□□□□ -0.53
USP3-207ENST00000558218 TAF6LQ9Y6J9 622 aa11.71□□□□□ -0.53
USP3-207ENST00000558218 DDX49Q9Y6V7 483 aaKnown RBP11.71□□□□□ -0.53
USP3-207ENST00000558218 LRRC37A2A6NM11 1700 aa11.71□□□□□ -0.54
USP3-207ENST00000558218 GRIN2DO15399 1336 aa11.7□□□□□ -0.54
USP3-207ENST00000558218 CCDC69A6NI79 296 aa11.7□□□□□ -0.54
USP3-207ENST00000558218 GCOM1H8Y6P7 765 aaPredicted RBP11.7□□□□□ -0.54
USP3-207ENST00000558218 OPLAHO14841 1288 aa11.7□□□□□ -0.54
USP3-207ENST00000558218 PPP1R11O60927 126 aaPredicted RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms