RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 RANBP1P43487 201 aa5.66□□□□□ -1.5
TMEM260-210ENST00000556422 TMCO5AQ8N6Q1 288 aa5.66□□□□□ -1.5
TMEM260-210ENST00000556422 EYA3Q99504 573 aa5.66□□□□□ -1.5
TMEM260-210ENST00000556422 SLC7A5P2Q9GIP4 190 aa5.66□□□□□ -1.5
TMEM260-210ENST00000556422 COA1Q9GZY4 146 aa5.66□□□□□ -1.5
TMEM260-210ENST00000556422 INTS13Q9NVM9 706 aa5.66□□□□□ -1.5
TMEM260-210ENST00000556422 IFNKQ9P0W0 207 aa5.66□□□□□ -1.5
TMEM260-210ENST00000556422 USP27XA6NNY8 438 aa5.66□□□□□ -1.5
TMEM260-210ENST00000556422 STXBP3O00186 592 aa5.66□□□□□ -1.5
TMEM260-210ENST00000556422 SLC26A4O43511 780 aa5.66□□□□□ -1.5
TMEM260-210ENST00000556422 MMP10P09238 476 aa5.66□□□□□ -1.5
TMEM260-210ENST00000556422 MYL5Q02045 173 aa5.66□□□□□ -1.5
TMEM260-210ENST00000556422 DEUP1Q05D60 604 aa5.66□□□□□ -1.5
TMEM260-210ENST00000556422 LLGL2Q6P1M3 1020 aa5.66□□□□□ -1.5
TMEM260-210ENST00000556422 ARMCX5Q6P1M9 558 aa5.66□□□□□ -1.5
TMEM260-210ENST00000556422 FILIP1Q7Z7B0 1213 aa5.66□□□□□ -1.5
TMEM260-210ENST00000556422 ZNF444Q8N0Y2 327 aaPredicted RBP5.66□□□□□ -1.5
TMEM260-210ENST00000556422 NLGN1Q8N2Q7 840 aa5.66□□□□□ -1.5
TMEM260-210ENST00000556422 FERMT2Q96AC1 680 aa5.66□□□□□ -1.5
TMEM260-210ENST00000556422 SCLT1Q96NL6 688 aa5.66□□□□□ -1.5
TMEM260-210ENST00000556422 SLC39A3Q9BRY0 314 aa5.66□□□□□ -1.5
TMEM260-210ENST00000556422 SH3GLB2Q9NR46 395 aa5.66□□□□□ -1.5
TMEM260-210ENST00000556422 KCNQ5Q9NR82 932 aa5.66□□□□□ -1.5
TMEM260-210ENST00000556422 PCDHA4Q9UN74 947 aa5.66□□□□□ -1.5
TMEM260-210ENST00000556422 C10orf71Q711Q0 1435 aa5.66□□□□□ -1.5
TMEM260-210ENST00000556422 SRCAPQ6ZRS2 3230 aa5.65□□□□□ -1.5
TMEM260-210ENST00000556422 VWA3AA6NCI4 1184 aa5.65□□□□□ -1.5
TMEM260-210ENST00000556422 SLURP2P0DP57 97 aa5.65□□□□□ -1.5
TMEM260-210ENST00000556422 NPR1P16066 1061 aa5.65□□□□□ -1.5
TMEM260-210ENST00000556422 ZNF18P17022 549 aa5.65□□□□□ -1.5
TMEM260-210ENST00000556422 BAG6P46379 1132 aa5.65□□□□□ -1.5
TMEM260-210ENST00000556422 TRAPPC10P48553 1259 aa5.65□□□□□ -1.5
TMEM260-210ENST00000556422 NLRP5P59047 1200 aa5.65□□□□□ -1.5
TMEM260-210ENST00000556422 CLEC10AQ8IUN9 316 aa5.65□□□□□ -1.5
TMEM260-210ENST00000556422 BLIDQ8IZY5 108 aa5.65□□□□□ -1.5
TMEM260-210ENST00000556422 DAGLBQ8NCG7 672 aa5.65□□□□□ -1.5
TMEM260-210ENST00000556422 USP6NLQ92738 828 aa5.65□□□□□ -1.5
TMEM260-210ENST00000556422 IWS1Q96ST2 819 aa5.65□□□□□ -1.5
TMEM260-210ENST00000556422 FANCLQ9NW38 375 aa5.65□□□□□ -1.5
TMEM260-210ENST00000556422 BARHL2Q9NY43 387 aa5.65□□□□□ -1.5
TMEM260-210ENST00000556422 SPATA7Q9P0W8 599 aa5.65□□□□□ -1.5
TMEM260-210ENST00000556422 PCDHA6Q9UN73 950 aa5.65□□□□□ -1.5
TMEM260-210ENST00000556422 PCDHA8Q9Y5H6 950 aa5.65□□□□□ -1.5
TMEM260-210ENST00000556422 IGKV6D-41A0A0C4DH26 115 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 F8W031 263 aaPredicted RBP5.65□□□□□ -1.51
TMEM260-210ENST00000556422 MMEP08473 750 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 MSL3P1P0C860 447 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 PLCG2P16885 1265 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 SMARCA1P28370 1054 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 ERCC5P28715 1186 aaPredicted RBP5.65□□□□□ -1.51
TMEM260-210ENST00000556422 GCKP35557 465 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 FANCCQ00597 558 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 KCTD2Q14681 263 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 ZRSR1Q15695 479 aaKnown RBP5.65□□□□□ -1.51
TMEM260-210ENST00000556422 PTPROQ16827 1216 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 DOK7Q18PE1 504 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 GJC2Q5T442 439 aaPredicted RBP5.65□□□□□ -1.51
TMEM260-210ENST00000556422 ACBD5Q5T8D3 534 aaPredicted RBP5.65□□□□□ -1.51
TMEM260-210ENST00000556422 MSL1Q68DK7 614 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 ALKBH2Q6NS38 261 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 USP17L2Q6R6M4 530 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 WDR75Q8IWA0 830 aaKnown RBP5.65□□□□□ -1.51
TMEM260-210ENST00000556422 NDUFAF2Q8N183 169 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 KRT222Q8N1A0 295 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 ARMC2Q8NEN0 867 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 MYRIPQ8NFW9 859 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 DHX58Q96C10 678 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 SPZ1Q9BXG8 430 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 TRIM7Q9C029 511 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 TMA7Q9Y2S6 64 aaKnown RBP5.65□□□□□ -1.51
TMEM260-210ENST00000556422 PCDHAC2Q9Y5I4 1007 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 SMCHD1A6NHR9 2005 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 KLRF2D3W0D1 207 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 FGFR1OPO95684 399 aaKnown RBP5.65□□□□□ -1.51
TMEM260-210ENST00000556422 BMP15O95972 392 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 APBA3O96018 575 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 CD44P16070 742 aaKnown RBP5.65□□□□□ -1.51
TMEM260-210ENST00000556422 MCM7P33993 719 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 DPYDQ12882 1025 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 PTPN21Q16825 1174 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 TSNAXIP1Q2TAA8 658 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 AGAP9Q5VTM2 703 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 APOBEC3HQ6NTF7 200 aaKnown RBP5.65□□□□□ -1.51
TMEM260-210ENST00000556422 PDXDC2PQ6P474 469 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 TSC1Q92574 1164 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 PAGE5Q96GU1 130 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 TAOK3Q9H2K8 898 aa5.65□□□□□ -1.51
TMEM260-210ENST00000556422 DHX36Q9H2U1 1008 aaKnown RBP5.65□□□□□ -1.51
TMEM260-210ENST00000556422 ANKRD33BA6NCL7 494 aa5.64□□□□□ -1.51
TMEM260-210ENST00000556422 SMTNL1A8MU46 457 aa5.64□□□□□ -1.51
TMEM260-210ENST00000556422 TMEM232C9JQI7 657 aa5.64□□□□□ -1.51
TMEM260-210ENST00000556422 IMPDH2P12268 514 aa5.64□□□□□ -1.51
TMEM260-210ENST00000556422 MATR3P43243 847 aaKnown RBP eCLIP5.64□□□□□ -1.51
TMEM260-210ENST00000556422 RPS6KA3P51812 740 aa5.64□□□□□ -1.51
TMEM260-210ENST00000556422 ZNF132P52740 706 aa5.64□□□□□ -1.51
TMEM260-210ENST00000556422 GSCP56915 257 aaPredicted RBP5.64□□□□□ -1.51
TMEM260-210ENST00000556422 NFIAQ12857 509 aa5.64□□□□□ -1.51
TMEM260-210ENST00000556422 BIRC3Q13489 604 aa5.64□□□□□ -1.51
TMEM260-210ENST00000556422 PICALMQ13492 652 aa5.64□□□□□ -1.51
TMEM260-210ENST00000556422 FILIP1LQ4L180 1135 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms