RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 EIF3JO75822 258 aaKnown RBP16■□□□□ 0.15
VIPAS39-208ENST00000556412 MRPS9P82933 396 aaKnown RBP16■□□□□ 0.15
VIPAS39-208ENST00000556412 CACNB2Q08289 660 aaPredicted RBP16■□□□□ 0.15
VIPAS39-208ENST00000556412 ACVR2BQ13705 512 aa16■□□□□ 0.15
VIPAS39-208ENST00000556412 PWP2Q15269 919 aaKnown RBP16■□□□□ 0.15
VIPAS39-208ENST00000556412 LETM2Q2VYF4 491 aa16■□□□□ 0.15
VIPAS39-208ENST00000556412 MORC4Q8TE76 937 aa16■□□□□ 0.15
VIPAS39-208ENST00000556412 ABHD16BQ9H3Z7 469 aa16■□□□□ 0.15
VIPAS39-208ENST00000556412 MTMR6Q9Y217 621 aa16■□□□□ 0.15
VIPAS39-208ENST00000556412 NEK8Q86SG6 692 aa15.99■□□□□ 0.15
VIPAS39-208ENST00000556412 PDGFCQ9NRA1 345 aa15.99■□□□□ 0.15
VIPAS39-208ENST00000556412 SMCHD1A6NHR9 2005 aa15.99■□□□□ 0.15
VIPAS39-208ENST00000556412 U2AF2P26368 475 aaKnown RBP eCLIP15.98■□□□□ 0.15
VIPAS39-208ENST00000556412 PKP1Q13835 747 aa15.98■□□□□ 0.15
VIPAS39-208ENST00000556412 XRRA1Q6P2D8 792 aa15.98■□□□□ 0.15
VIPAS39-208ENST00000556412 VTA1Q9NP79 307 aa15.98■□□□□ 0.15
VIPAS39-208ENST00000556412 MYH6P13533 1939 aa15.98■□□□□ 0.15
VIPAS39-208ENST00000556412 CCND3P30281 292 aaPredicted RBP15.98■□□□□ 0.15
VIPAS39-208ENST00000556412 GNPTABQ3T906 1256 aa15.98■□□□□ 0.15
VIPAS39-208ENST00000556412 NLRX1Q86UT6 975 aa15.98■□□□□ 0.15
VIPAS39-208ENST00000556412 TRPV1Q8NER1 839 aa15.98■□□□□ 0.15
VIPAS39-208ENST00000556412 CYP2W1Q8TAV3 490 aa15.98■□□□□ 0.15
VIPAS39-208ENST00000556412 PKD2L1Q9P0L9 805 aa15.98■□□□□ 0.15
VIPAS39-208ENST00000556412 NOL7Q9UMY1 257 aaKnown RBP15.98■□□□□ 0.15
VIPAS39-208ENST00000556412 MRVI1Q9Y6F6 885 aa15.98■□□□□ 0.15
VIPAS39-208ENST00000556412 CASP8AP2Q9UKL3 1982 aa15.97■□□□□ 0.15
VIPAS39-208ENST00000556412 CCNT1O60563 726 aaKnown RBP15.97■□□□□ 0.15
VIPAS39-208ENST00000556412 STAM2O75886 525 aa15.97■□□□□ 0.15
VIPAS39-208ENST00000556412 TDP2O95551 362 aa15.97■□□□□ 0.15
VIPAS39-208ENST00000556412 IGHA2P01877 340 aa15.97■□□□□ 0.15
VIPAS39-208ENST00000556412 ZNF865P0CJ78 1059 aaPredicted RBP15.97■□□□□ 0.15
VIPAS39-208ENST00000556412 CYBAP13498 195 aa15.97■□□□□ 0.15
VIPAS39-208ENST00000556412 ITGB5P18084 799 aa15.97■□□□□ 0.15
VIPAS39-208ENST00000556412 ADCYAP1R1P41586 468 aa15.97■□□□□ 0.15
VIPAS39-208ENST00000556412 CCDC144BQ3MJ40 725 aa15.97■□□□□ 0.15
VIPAS39-208ENST00000556412 CEP55Q53EZ4 464 aa15.97■□□□□ 0.15
VIPAS39-208ENST00000556412 PRR16Q569H4 304 aa15.97■□□□□ 0.15
VIPAS39-208ENST00000556412 CRYGNQ8WXF5 182 aa15.97■□□□□ 0.15
VIPAS39-208ENST00000556412 IPO9Q96P70 1041 aaKnown RBP15.97■□□□□ 0.15
VIPAS39-208ENST00000556412 UIMC1Q96RL1 719 aa15.97■□□□□ 0.15
VIPAS39-208ENST00000556412 MXRA8Q9BRK3 442 aa15.97■□□□□ 0.15
VIPAS39-208ENST00000556412 WDR11Q9BZH6 1224 aa15.97■□□□□ 0.15
VIPAS39-208ENST00000556412 RBBP6Q7Z6E9 1792 aaKnown RBP15.97■□□□□ 0.15
VIPAS39-208ENST00000556412 MGAMO43451 1857 aa15.97■□□□□ 0.15
VIPAS39-208ENST00000556412 FAM86B1E9PN63 330 aa15.96■□□□□ 0.15
VIPAS39-208ENST00000556412 RGS20O76081 388 aa15.96■□□□□ 0.15
VIPAS39-208ENST00000556412 CYP3A4P08684 503 aa15.96■□□□□ 0.15
VIPAS39-208ENST00000556412 FAM86B2P0C5J1 330 aa15.96■□□□□ 0.15
VIPAS39-208ENST00000556412 USP11P51784 963 aa15.96■□□□□ 0.15
VIPAS39-208ENST00000556412 MTMR1Q13613 665 aa15.96■□□□□ 0.15
VIPAS39-208ENST00000556412 ANO1Q5XXA6 986 aa15.96■□□□□ 0.15
VIPAS39-208ENST00000556412 SCFD2Q8WU76 684 aa15.96■□□□□ 0.15
VIPAS39-208ENST00000556412 INPP4AQ96PE3 977 aaPredicted RBP15.96■□□□□ 0.15
VIPAS39-208ENST00000556412 KATNBL1Q9H079 304 aa15.96■□□□□ 0.15
VIPAS39-208ENST00000556412 HMX1Q9NP08 348 aaPredicted RBP15.96■□□□□ 0.15
VIPAS39-208ENST00000556412 NRBP1Q9UHY1 535 aa15.96■□□□□ 0.15
VIPAS39-208ENST00000556412 UBIAD1Q9Y5Z9 338 aa15.96■□□□□ 0.15
VIPAS39-208ENST00000556412 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.96■□□□□ 0.14
VIPAS39-208ENST00000556412 SORBS3O60504 671 aa15.96■□□□□ 0.14
VIPAS39-208ENST00000556412 ZSCAN22P10073 491 aaPredicted RBP15.96■□□□□ 0.14
VIPAS39-208ENST00000556412 MTFR1Q15390 333 aa15.96■□□□□ 0.14
VIPAS39-208ENST00000556412 FOXD4L6Q3SYB3 417 aaPredicted RBP15.96■□□□□ 0.14
VIPAS39-208ENST00000556412 COL13A1Q5TAT6 717 aaPredicted RBP15.96■□□□□ 0.14
VIPAS39-208ENST00000556412 MAP3K21Q5TCX8 1036 aa15.96■□□□□ 0.14
VIPAS39-208ENST00000556412 TAPT1Q6NXT6 567 aa15.96■□□□□ 0.14
VIPAS39-208ENST00000556412 FOXD4L3Q6VB84 417 aaPredicted RBP15.96■□□□□ 0.14
VIPAS39-208ENST00000556412 PLA2G4DQ86XP0 818 aa15.96■□□□□ 0.14
VIPAS39-208ENST00000556412 LENG1Q96BZ8 264 aaPredicted RBP15.96■□□□□ 0.14
VIPAS39-208ENST00000556412 UNC93B1Q9H1C4 597 aa15.96■□□□□ 0.14
VIPAS39-208ENST00000556412 JADE2Q9NQC1 790 aa15.96■□□□□ 0.14
VIPAS39-208ENST00000556412 FAM184BQ9ULE4 1060 aa15.96■□□□□ 0.14
VIPAS39-208ENST00000556412 FIBPO43427 364 aa15.95■□□□□ 0.14
VIPAS39-208ENST00000556412 TXNP10599 105 aaKnown RBP15.95■□□□□ 0.14
VIPAS39-208ENST00000556412 PDIA4P13667 645 aaKnown RBP15.95■□□□□ 0.14
VIPAS39-208ENST00000556412 AKR1A1P14550 325 aa15.95■□□□□ 0.14
VIPAS39-208ENST00000556412 TNFAIP2Q03169 654 aa15.95■□□□□ 0.14
VIPAS39-208ENST00000556412 RESTQ13127 1097 aa15.95■□□□□ 0.14
VIPAS39-208ENST00000556412 NBR1Q14596 966 aa15.95■□□□□ 0.14
VIPAS39-208ENST00000556412 TTLL4Q14679 1199 aa15.95■□□□□ 0.14
VIPAS39-208ENST00000556412 LY6KQ17RY6 165 aa15.95■□□□□ 0.14
VIPAS39-208ENST00000556412 BRAPQ7Z569 592 aa15.95■□□□□ 0.14
VIPAS39-208ENST00000556412 DDX25Q9UHL0 483 aaKnown RBP15.95■□□□□ 0.14
VIPAS39-208ENST00000556412 WNT7AO00755 349 aa15.94■□□□□ 0.14
VIPAS39-208ENST00000556412 EDIL3O43854 480 aa15.94■□□□□ 0.14
VIPAS39-208ENST00000556412 ARIH2O95376 493 aa15.94■□□□□ 0.14
VIPAS39-208ENST00000556412 ARP10275 920 aa15.94■□□□□ 0.14
VIPAS39-208ENST00000556412 CCL5P13501 91 aa15.94■□□□□ 0.14
VIPAS39-208ENST00000556412 PTGS1P23219 599 aa15.94■□□□□ 0.14
VIPAS39-208ENST00000556412 MCM7P33993 719 aa15.94■□□□□ 0.14
VIPAS39-208ENST00000556412 TTC38Q5R3I4 469 aa15.94■□□□□ 0.14
VIPAS39-208ENST00000556412 TMEM63BQ5T3F8 832 aa15.94■□□□□ 0.14
VIPAS39-208ENST00000556412 GJC2Q5T442 439 aaPredicted RBP15.94■□□□□ 0.14
VIPAS39-208ENST00000556412 FAM173BQ6P4H8 233 aa15.94■□□□□ 0.14
VIPAS39-208ENST00000556412 GPRASP2Q96D09 838 aa15.94■□□□□ 0.14
VIPAS39-208ENST00000556412 NAP1L4Q99733 375 aaKnown RBP15.94■□□□□ 0.14
VIPAS39-208ENST00000556412 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.94■□□□□ 0.14
VIPAS39-208ENST00000556412 RNF208Q9H0X6 261 aa15.94■□□□□ 0.14
VIPAS39-208ENST00000556412 KCNH7Q9NS40 1196 aa15.94■□□□□ 0.14
VIPAS39-208ENST00000556412 MEIS1O00470 390 aa15.94■□□□□ 0.14
VIPAS39-208ENST00000556412 SEPT4O43236 478 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms