RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 MB21D2Q8IYB1 491 aaPredicted RBP12.6□□□□□ -0.39
VTI1BP3-201ENST00000550220 CCDC155Q8N6L0 562 aa12.6□□□□□ -0.39
VTI1BP3-201ENST00000550220 AFG1LQ8WV93 481 aa12.6□□□□□ -0.39
VTI1BP3-201ENST00000550220 COPS5Q92905 334 aa12.6□□□□□ -0.39
VTI1BP3-201ENST00000550220 TIFAQ96CG3 184 aa12.6□□□□□ -0.39
VTI1BP3-201ENST00000550220 PIGSQ96S52 555 aa12.6□□□□□ -0.39
VTI1BP3-201ENST00000550220 PDCD2LQ9BRP1 358 aa12.6□□□□□ -0.39
VTI1BP3-201ENST00000550220 TRMT13Q9NUP7 481 aaKnown RBP12.6□□□□□ -0.39
VTI1BP3-201ENST00000550220 MRVI1Q9Y6F6 885 aa12.6□□□□□ -0.39
VTI1BP3-201ENST00000550220 PPFIA4O75335 1185 aa12.59□□□□□ -0.39
VTI1BP3-201ENST00000550220 PARNO95453 639 aaKnown RBP12.59□□□□□ -0.39
VTI1BP3-201ENST00000550220 MMP3P08254 477 aa12.59□□□□□ -0.39
VTI1BP3-201ENST00000550220 ACTN1P12814 892 aa12.59□□□□□ -0.39
VTI1BP3-201ENST00000550220 CCL23P55773 120 aa12.59□□□□□ -0.39
VTI1BP3-201ENST00000550220 ARHGAP1Q07960 439 aa12.59□□□□□ -0.39
VTI1BP3-201ENST00000550220 LY6KQ17RY6 165 aa12.59□□□□□ -0.39
VTI1BP3-201ENST00000550220 GNPTABQ3T906 1256 aa12.59□□□□□ -0.39
VTI1BP3-201ENST00000550220 BMP2KLQ5H9B9 411 aa12.59□□□□□ -0.39
VTI1BP3-201ENST00000550220 DHX37Q8IY37 1157 aaKnown RBP12.59□□□□□ -0.39
VTI1BP3-201ENST00000550220 PPTC7Q8NI37 304 aa12.59□□□□□ -0.39
VTI1BP3-201ENST00000550220 CUL5Q93034 780 aa12.59□□□□□ -0.39
VTI1BP3-201ENST00000550220 RRP36Q96EU6 259 aaKnown RBP12.59□□□□□ -0.39
VTI1BP3-201ENST00000550220 TTYH1Q9H313 450 aaPredicted RBP12.59□□□□□ -0.39
VTI1BP3-201ENST00000550220 ZNF576Q9H609 170 aa12.59□□□□□ -0.39
VTI1BP3-201ENST00000550220 SEC63Q9UGP8 760 aaKnown RBP12.59□□□□□ -0.39
VTI1BP3-201ENST00000550220 CCDC69A6NI79 296 aa12.58□□□□□ -0.4
VTI1BP3-201ENST00000550220 OPLAHO14841 1288 aa12.58□□□□□ -0.4
VTI1BP3-201ENST00000550220 PPP1R11O60927 126 aaPredicted RBP12.58□□□□□ -0.4
VTI1BP3-201ENST00000550220 MYCLP12524 364 aaPredicted RBP12.58□□□□□ -0.4
VTI1BP3-201ENST00000550220 FOSL2P15408 326 aa12.58□□□□□ -0.4
VTI1BP3-201ENST00000550220 CCND2P30279 289 aa12.58□□□□□ -0.4
VTI1BP3-201ENST00000550220 LIFRP42702 1097 aa12.58□□□□□ -0.4
VTI1BP3-201ENST00000550220 PGM5Q15124 567 aa12.58□□□□□ -0.4
VTI1BP3-201ENST00000550220 XRRA1Q6P2D8 792 aa12.58□□□□□ -0.4
VTI1BP3-201ENST00000550220 NFXL1Q6ZNB6 911 aa12.58□□□□□ -0.4
VTI1BP3-201ENST00000550220 CHST3Q7LGC8 479 aa12.58□□□□□ -0.4
VTI1BP3-201ENST00000550220 ZNF654Q8IZM8 581 aa12.58□□□□□ -0.4
VTI1BP3-201ENST00000550220 CAGE1Q8TC20 777 aa12.58□□□□□ -0.4
VTI1BP3-201ENST00000550220 ESYT1Q9BSJ8 1104 aa12.58□□□□□ -0.4
VTI1BP3-201ENST00000550220 SPZ1Q9BXG8 430 aa12.58□□□□□ -0.4
VTI1BP3-201ENST00000550220 LSG1Q9H089 658 aaKnown RBP12.58□□□□□ -0.4
VTI1BP3-201ENST00000550220 WNT8AQ9H1J5 351 aa12.58□□□□□ -0.4
VTI1BP3-201ENST00000550220 LY9Q9HBG7 655 aa12.58□□□□□ -0.4
VTI1BP3-201ENST00000550220 SLC4A7Q9Y6M7 1214 aa12.58□□□□□ -0.4
VTI1BP3-201ENST00000550220 LAMA4Q16363 1823 aa12.58□□□□□ -0.4
VTI1BP3-201ENST00000550220 DLL1O00548 723 aa12.57□□□□□ -0.4
VTI1BP3-201ENST00000550220 PRC1O43663 620 aa12.57□□□□□ -0.4
VTI1BP3-201ENST00000550220 CYTH3O43739 400 aa12.57□□□□□ -0.4
VTI1BP3-201ENST00000550220 CYP2C9P11712 490 aa12.57□□□□□ -0.4
VTI1BP3-201ENST00000550220 HOXA13P31271 388 aaPredicted RBP12.57□□□□□ -0.4
VTI1BP3-201ENST00000550220 ANTXR2P58335 489 aa12.57□□□□□ -0.4
VTI1BP3-201ENST00000550220 PTGISQ16647 500 aa12.57□□□□□ -0.4
VTI1BP3-201ENST00000550220 MYSM1Q5VVJ2 828 aa12.57□□□□□ -0.4
VTI1BP3-201ENST00000550220 SYNE3Q6ZMZ3 975 aa12.57□□□□□ -0.4
VTI1BP3-201ENST00000550220 OTOP2Q7RTS6 562 aa12.57□□□□□ -0.4
VTI1BP3-201ENST00000550220 TEX2Q8IWB9 1127 aa12.57□□□□□ -0.4
VTI1BP3-201ENST00000550220 C7orf31Q8N865 590 aa12.57□□□□□ -0.4
VTI1BP3-201ENST00000550220 MAFAQ8NHW3 353 aaPredicted RBP12.57□□□□□ -0.4
VTI1BP3-201ENST00000550220 PBX4Q9BYU1 374 aa12.57□□□□□ -0.4
VTI1BP3-201ENST00000550220 SLC12A7Q9Y666 1083 aa12.57□□□□□ -0.4
VTI1BP3-201ENST00000550220 UMODL1Q5DID0 1318 aa12.57□□□□□ -0.4
VTI1BP3-201ENST00000550220 PIK3CDO00329 1044 aa12.56□□□□□ -0.4
VTI1BP3-201ENST00000550220 SLC27A2O14975 620 aa12.56□□□□□ -0.4
VTI1BP3-201ENST00000550220 IQCF3P0C7M6 154 aa12.56□□□□□ -0.4
VTI1BP3-201ENST00000550220 NEDD9Q14511 834 aa12.56□□□□□ -0.4
VTI1BP3-201ENST00000550220 NECTIN1Q15223 517 aa12.56□□□□□ -0.4
VTI1BP3-201ENST00000550220 CELF3Q5SZQ8 465 aaKnown RBP12.56□□□□□ -0.4
VTI1BP3-201ENST00000550220 CREB3L3Q68CJ9 461 aa12.56□□□□□ -0.4
VTI1BP3-201ENST00000550220 FCHSD1Q86WN1 690 aa12.56□□□□□ -0.4
VTI1BP3-201ENST00000550220 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.56□□□□□ -0.4
VTI1BP3-201ENST00000550220 SMARCC2Q8TAQ2 1214 aa12.56□□□□□ -0.4
VTI1BP3-201ENST00000550220 PHOSPHO2Q8TCD6 241 aa12.56□□□□□ -0.4
VTI1BP3-201ENST00000550220 AFAP1L1Q8TED9 768 aa12.56□□□□□ -0.4
VTI1BP3-201ENST00000550220 SCLYQ96I15 445 aa12.56□□□□□ -0.4
VTI1BP3-201ENST00000550220 SPATA33Q96N06 139 aa12.56□□□□□ -0.4
VTI1BP3-201ENST00000550220 MLXIPQ9HAP2 919 aa12.56□□□□□ -0.4
VTI1BP3-201ENST00000550220 SLC28A3Q9HAS3 691 aa12.56□□□□□ -0.4
VTI1BP3-201ENST00000550220 SENP2Q9HC62 589 aa12.56□□□□□ -0.4
VTI1BP3-201ENST00000550220 ANO2Q9NQ90 1003 aa12.56□□□□□ -0.4
VTI1BP3-201ENST00000550220 GTF2IRD1Q9UHL9 959 aa12.56□□□□□ -0.4
VTI1BP3-201ENST00000550220 ZBBXA8MT70 800 aa12.55□□□□□ -0.4
VTI1BP3-201ENST00000550220 KIF28PB7ZC32 967 aa12.55□□□□□ -0.4
VTI1BP3-201ENST00000550220 SH2B2O14492 632 aaPredicted RBP12.55□□□□□ -0.4
VTI1BP3-201ENST00000550220 F2P00734 622 aa12.55□□□□□ -0.4
VTI1BP3-201ENST00000550220 HOXD8P13378 290 aaPredicted RBP12.55□□□□□ -0.4
VTI1BP3-201ENST00000550220 ATP2A2P16615 1042 aaKnown RBP12.55□□□□□ -0.4
VTI1BP3-201ENST00000550220 ICAM3P32942 547 aa12.55□□□□□ -0.4
VTI1BP3-201ENST00000550220 PSEN2P49810 448 aa12.55□□□□□ -0.4
VTI1BP3-201ENST00000550220 CHMP4BP1P59074 171 aa12.55□□□□□ -0.4
VTI1BP3-201ENST00000550220 GRIN2CQ14957 1233 aa12.55□□□□□ -0.4
VTI1BP3-201ENST00000550220 SLC35G1Q2M3R5 365 aa12.55□□□□□ -0.4
VTI1BP3-201ENST00000550220 GIMAP8Q8ND71 665 aaPredicted RBP12.55□□□□□ -0.4
VTI1BP3-201ENST00000550220 MYLIPQ8WY64 445 aa12.55□□□□□ -0.4
VTI1BP3-201ENST00000550220 KAT2BQ92831 832 aa12.55□□□□□ -0.4
VTI1BP3-201ENST00000550220 GAS2L1Q99501 681 aaPredicted RBP12.55□□□□□ -0.4
VTI1BP3-201ENST00000550220 FTOQ9C0B1 505 aaKnown RBP eCLIP12.55□□□□□ -0.4
VTI1BP3-201ENST00000550220 CXXC1Q9P0U4 656 aaPredicted RBP12.55□□□□□ -0.4
VTI1BP3-201ENST00000550220 PCDHA11Q9Y5I1 949 aa12.55□□□□□ -0.4
VTI1BP3-201ENST00000550220 TAF6LQ9Y6J9 622 aa12.55□□□□□ -0.4
VTI1BP3-201ENST00000550220 GRXCR1A8MXD5 290 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms