RNA–Protein interactions for RNA: ENST00000539232.1

LMO3-220, Transcript of LIM domain only 3, humanhuman

TSL 5

Gene LMO3, Length 580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-220ENST00000539232 CATIPQ7Z7H3 387 aa8.4□□□□□ -1.06
LMO3-220ENST00000539232 NEK1Q96PY6 1258 aa8.4□□□□□ -1.06
LMO3-220ENST00000539232 COG5Q9UP83 839 aa8.4□□□□□ -1.06
LMO3-220ENST00000539232 PCDHA1Q9Y5I3 950 aa8.4□□□□□ -1.06
LMO3-220ENST00000539232 CHD8Q9HCK8 2581 aa8.4□□□□□ -1.07
LMO3-220ENST00000539232 PRRC2BQ5JSZ5 2229 aaKnown RBP8.39□□□□□ -1.07
LMO3-220ENST00000539232 CHD7Q9P2D1 2997 aa8.39□□□□□ -1.07
LMO3-220ENST00000539232 ABCB11O95342 1321 aa8.39□□□□□ -1.07
LMO3-220ENST00000539232 ZNF236Q9UL36 1845 aa8.39□□□□□ -1.07
LMO3-220ENST00000539232 PNMA6FA0A0J9YX94 578 aa8.39□□□□□ -1.07
LMO3-220ENST00000539232 RBM47A0AV96 593 aaKnown RBP8.39□□□□□ -1.07
LMO3-220ENST00000539232 KBTBD13C9JR72 458 aa8.39□□□□□ -1.07
LMO3-220ENST00000539232 C6orf222P0C671 652 aaPredicted RBP8.39□□□□□ -1.07
LMO3-220ENST00000539232 LIFRP42702 1097 aa8.39□□□□□ -1.07
LMO3-220ENST00000539232 NT5C2P49902 561 aa8.39□□□□□ -1.07
LMO3-220ENST00000539232 HSD17B4P51659 736 aa8.39□□□□□ -1.07
LMO3-220ENST00000539232 GJA9P57773 515 aa8.39□□□□□ -1.07
LMO3-220ENST00000539232 APOBRQ0VD83 1088 aa8.39□□□□□ -1.07
LMO3-220ENST00000539232 SKIV2LQ15477 1246 aaKnown RBP8.39□□□□□ -1.07
LMO3-220ENST00000539232 APOA5Q6Q788 366 aa8.39□□□□□ -1.07
LMO3-220ENST00000539232 CASC1Q6TDU7 716 aa8.39□□□□□ -1.07
LMO3-220ENST00000539232 CXCL17Q6UXB2 119 aa8.39□□□□□ -1.07
LMO3-220ENST00000539232 TMTC3Q6ZXV5 915 aa8.39□□□□□ -1.07
LMO3-220ENST00000539232 NOL8Q76FK4 1167 aaKnown RBP8.39□□□□□ -1.07
LMO3-220ENST00000539232 DHX32Q7L7V1 743 aaKnown RBP8.39□□□□□ -1.07
LMO3-220ENST00000539232 MICU3Q86XE3 530 aa8.39□□□□□ -1.07
LMO3-220ENST00000539232 RGS22Q8NE09 1264 aa8.39□□□□□ -1.07
LMO3-220ENST00000539232 JAKMIP1Q96N16 626 aaKnown RBP8.39□□□□□ -1.07
LMO3-220ENST00000539232 AMNQ9BXJ7 453 aa8.39□□□□□ -1.07
LMO3-220ENST00000539232 USP26Q9BXU7 913 aa8.39□□□□□ -1.07
LMO3-220ENST00000539232 PBX4Q9BYU1 374 aa8.39□□□□□ -1.07
LMO3-220ENST00000539232 KLF18A0A0U1RQI7 1052 aa8.38□□□□□ -1.07
LMO3-220ENST00000539232 ERICH2A1L162 156 aa8.38□□□□□ -1.07
LMO3-220ENST00000539232 CCDC69A6NI79 296 aa8.38□□□□□ -1.07
LMO3-220ENST00000539232 PQBP1O60828 265 aaKnown RBP8.38□□□□□ -1.07
LMO3-220ENST00000539232 DDAH1O94760 285 aa8.38□□□□□ -1.07
LMO3-220ENST00000539232 ASGR1P07306 291 aa8.38□□□□□ -1.07
LMO3-220ENST00000539232 ALADP13716 330 aa8.38□□□□□ -1.07
LMO3-220ENST00000539232 CST5P28325 142 aaPredicted RBP8.38□□□□□ -1.07
LMO3-220ENST00000539232 ADD1P35611 737 aaKnown RBP8.38□□□□□ -1.07
LMO3-220ENST00000539232 PBX2P40425 430 aa8.38□□□□□ -1.07
LMO3-220ENST00000539232 NKX3-2P78367 333 aa8.38□□□□□ -1.07
LMO3-220ENST00000539232 GHRHRQ02643 423 aa8.38□□□□□ -1.07
LMO3-220ENST00000539232 FPGSQ05932 587 aa8.38□□□□□ -1.07
LMO3-220ENST00000539232 PDE4DQ08499 809 aa8.38□□□□□ -1.07
LMO3-220ENST00000539232 SART3Q15020 963 aaKnown RBP8.38□□□□□ -1.07
LMO3-220ENST00000539232 FSCN1Q16658 493 aaKnown RBP8.38□□□□□ -1.07
LMO3-220ENST00000539232 LY6KQ17RY6 165 aa8.38□□□□□ -1.07
LMO3-220ENST00000539232 GNASQ5JWF2 1037 aa8.38□□□□□ -1.07
LMO3-220ENST00000539232 CCDC62Q6P9F0 684 aa8.38□□□□□ -1.07
LMO3-220ENST00000539232 USP17L6PQ6QN14 398 aa8.38□□□□□ -1.07
LMO3-220ENST00000539232 SEPT14Q6ZU15 432 aa8.38□□□□□ -1.07
LMO3-220ENST00000539232 TLK2Q86UE8 772 aa8.38□□□□□ -1.07
LMO3-220ENST00000539232 FCHSD1Q86WN1 690 aa8.38□□□□□ -1.07
LMO3-220ENST00000539232 MICALL1Q8N3F8 863 aa8.38□□□□□ -1.07
LMO3-220ENST00000539232 FANCBQ8NB91 859 aa8.38□□□□□ -1.07
LMO3-220ENST00000539232 TMEM87BQ96K49 555 aa8.38□□□□□ -1.07
LMO3-220ENST00000539232 PKNOX2Q96KN3 472 aa8.38□□□□□ -1.07
LMO3-220ENST00000539232 RMDN3Q96TC7 470 aa8.38□□□□□ -1.07
LMO3-220ENST00000539232 PHOX2BQ99453 314 aa8.38□□□□□ -1.07
LMO3-220ENST00000539232 WDR11Q9BZH6 1224 aa8.38□□□□□ -1.07
LMO3-220ENST00000539232 UPF3BQ9BZI7 483 aaKnown RBP8.38□□□□□ -1.07
LMO3-220ENST00000539232 PXMP2Q9NR77 195 aa8.38□□□□□ -1.07
LMO3-220ENST00000539232 MRPL11Q9Y3B7 192 aaKnown RBP8.38□□□□□ -1.07
LMO3-220ENST00000539232 SLC12A7Q9Y666 1083 aa8.38□□□□□ -1.07
LMO3-220ENST00000539232 ZFHX2Q9C0A1 2572 aaPredicted RBP8.38□□□□□ -1.07
LMO3-220ENST00000539232 USP34Q70CQ2 3546 aa8.38□□□□□ -1.07
LMO3-220ENST00000539232 PARP14Q460N5 1801 aa8.38□□□□□ -1.07
LMO3-220ENST00000539232 MEIS2O14770 477 aa8.37□□□□□ -1.07
LMO3-220ENST00000539232 NR3C2P08235 984 aa8.37□□□□□ -1.07
LMO3-220ENST00000539232 MYCLP12524 364 aaPredicted RBP8.37□□□□□ -1.07
LMO3-220ENST00000539232 RPS6KB1P23443 525 aa8.37□□□□□ -1.07
LMO3-220ENST00000539232 CDK7P50613 346 aa8.37□□□□□ -1.07
LMO3-220ENST00000539232 SP2Q02086 613 aa8.37□□□□□ -1.07
LMO3-220ENST00000539232 FAAP100Q0VG06 881 aa8.37□□□□□ -1.07
LMO3-220ENST00000539232 SEMA3FQ13275 785 aa8.37□□□□□ -1.07
LMO3-220ENST00000539232 TOB2Q14106 344 aaPredicted RBP8.37□□□□□ -1.07
LMO3-220ENST00000539232 NBR1Q14596 966 aa8.37□□□□□ -1.07
LMO3-220ENST00000539232 RAB30Q15771 203 aa8.37□□□□□ -1.07
LMO3-220ENST00000539232 UBE2SQ16763 222 aa8.37□□□□□ -1.07
LMO3-220ENST00000539232 DUSP28Q4G0W2 176 aa8.37□□□□□ -1.07
LMO3-220ENST00000539232 C1orf53Q5VUE5 145 aa8.37□□□□□ -1.07
LMO3-220ENST00000539232 IQSEC1Q6DN90 963 aa8.37□□□□□ -1.07
LMO3-220ENST00000539232 Q6ZUG5 572 aa8.37□□□□□ -1.07
LMO3-220ENST00000539232 RNF180Q86T96 592 aa8.37□□□□□ -1.07
LMO3-220ENST00000539232 SGMS1Q86VZ5 419 aa8.37□□□□□ -1.07
LMO3-220ENST00000539232 CTCFLQ8NI51 663 aaPredicted RBP8.37□□□□□ -1.07
LMO3-220ENST00000539232 AFG1LQ8WV93 481 aa8.37□□□□□ -1.07
LMO3-220ENST00000539232 BRF1Q92994 677 aa8.37□□□□□ -1.07
LMO3-220ENST00000539232 VWCEQ96DN2 955 aa8.37□□□□□ -1.07
LMO3-220ENST00000539232 PDCD2LQ9BRP1 358 aa8.37□□□□□ -1.07
LMO3-220ENST00000539232 SPZ1Q9BXG8 430 aa8.37□□□□□ -1.07
LMO3-220ENST00000539232 TRPV6Q9H1D0 765 aa8.37□□□□□ -1.07
LMO3-220ENST00000539232 NCOA5Q9HCD5 579 aaKnown RBP8.37□□□□□ -1.07
LMO3-220ENST00000539232 VTA1Q9NP79 307 aa8.37□□□□□ -1.07
LMO3-220ENST00000539232 CD320Q9NPF0 282 aa8.37□□□□□ -1.07
LMO3-220ENST00000539232 MSRAQ9UJ68 235 aa8.37□□□□□ -1.07
LMO3-220ENST00000539232 V9GY48 417 aaPredicted RBP8.37□□□□□ -1.07
LMO3-220ENST00000539232 TRANK1O15050 2925 aa8.37□□□□□ -1.07
LMO3-220ENST00000539232 BRWD1Q9NSI6 2320 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms