RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 PTGISQ16647 500 aa13.22□□□□□ -0.29
VPS28-214ENST00000531032 TTC22Q5TAA0 569 aa13.22□□□□□ -0.29
VPS28-214ENST00000531032 ARHGEF16Q5VV41 709 aa13.22□□□□□ -0.29
VPS28-214ENST00000531032 CYB5R4Q7L1T6 521 aa13.22□□□□□ -0.29
VPS28-214ENST00000531032 RETREG2Q8NC44 543 aa13.22□□□□□ -0.29
VPS28-214ENST00000531032 CAGE1Q8TC20 777 aa13.22□□□□□ -0.29
VPS28-214ENST00000531032 ATXN2LQ8WWM7 1075 aaKnown RBP13.22□□□□□ -0.29
VPS28-214ENST00000531032 PPM1EQ8WY54 764 aa13.22□□□□□ -0.29
VPS28-214ENST00000531032 SLC9A7Q96T83 725 aa13.22□□□□□ -0.29
VPS28-214ENST00000531032 PXMP2Q9NR77 195 aa13.22□□□□□ -0.29
VPS28-214ENST00000531032 MAP3K20Q9NYL2 800 aaKnown RBP13.22□□□□□ -0.29
VPS28-214ENST00000531032 MAD2L2Q9UI95 211 aa13.22□□□□□ -0.29
VPS28-214ENST00000531032 DDX41Q9UJV9 622 aaKnown RBP13.22□□□□□ -0.29
VPS28-214ENST00000531032 NOD1Q9Y239 953 aa13.22□□□□□ -0.29
VPS28-214ENST00000531032 TRANK1O15050 2925 aa13.22□□□□□ -0.29
VPS28-214ENST00000531032 TET1Q8NFU7 2136 aa13.21□□□□□ -0.29
VPS28-214ENST00000531032 PALM3A6NDB9 673 aaPredicted RBP13.21□□□□□ -0.29
VPS28-214ENST00000531032 KLRF2D3W0D1 207 aa13.21□□□□□ -0.29
VPS28-214ENST00000531032 ZBTB5O15062 677 aa13.21□□□□□ -0.29
VPS28-214ENST00000531032 CFBP00751 764 aa13.21□□□□□ -0.29
VPS28-214ENST00000531032 CASTP20810 708 aaKnown RBP13.21□□□□□ -0.29
VPS28-214ENST00000531032 IGFBP4P22692 258 aa13.21□□□□□ -0.29
VPS28-214ENST00000531032 PDE4AP27815 886 aa13.21□□□□□ -0.29
VPS28-214ENST00000531032 RBL2Q08999 1139 aa13.21□□□□□ -0.29
VPS28-214ENST00000531032 DGKDQ16760 1214 aa13.21□□□□□ -0.29
VPS28-214ENST00000531032 TMEM67Q5HYA8 995 aa13.21□□□□□ -0.29
VPS28-214ENST00000531032 GDF6Q6KF10 455 aaPredicted RBP13.21□□□□□ -0.29
VPS28-214ENST00000531032 CCDC155Q8N6L0 562 aa13.21□□□□□ -0.29
VPS28-214ENST00000531032 PPTC7Q8NI37 304 aa13.21□□□□□ -0.29
VPS28-214ENST00000531032 PHOSPHO2Q8TCD6 241 aa13.21□□□□□ -0.29
VPS28-214ENST00000531032 AFAP1L1Q8TED9 768 aa13.21□□□□□ -0.29
VPS28-214ENST00000531032 THEGQ9P2T0 379 aa13.21□□□□□ -0.29
VPS28-214ENST00000531032 TRIP12Q14669 1992 aaPredicted RBP13.21□□□□□ -0.29
VPS28-214ENST00000531032 REV3LO60673 3130 aa13.2□□□□□ -0.3
VPS28-214ENST00000531032 RGS20O76081 388 aa13.2□□□□□ -0.3
VPS28-214ENST00000531032 BAIAP3O94812 1187 aa13.2□□□□□ -0.3
VPS28-214ENST00000531032 F2P00734 622 aa13.2□□□□□ -0.3
VPS28-214ENST00000531032 CA3P07451 260 aa13.2□□□□□ -0.3
VPS28-214ENST00000531032 HOXD8P13378 290 aaPredicted RBP13.2□□□□□ -0.3
VPS28-214ENST00000531032 CHMP4BP1P59074 171 aa13.2□□□□□ -0.3
VPS28-214ENST00000531032 SLC35G1Q2M3R5 365 aa13.2□□□□□ -0.3
VPS28-214ENST00000531032 STOX1Q6ZVD7 989 aa13.2□□□□□ -0.3
VPS28-214ENST00000531032 CHST3Q7LGC8 479 aa13.2□□□□□ -0.3
VPS28-214ENST00000531032 SAMD3Q8N6K7 520 aa13.2□□□□□ -0.3
VPS28-214ENST00000531032 DHX38Q92620 1227 aaKnown RBP13.2□□□□□ -0.3
VPS28-214ENST00000531032 PDCD2LQ9BRP1 358 aa13.2□□□□□ -0.3
VPS28-214ENST00000531032 KATNAL1Q9BW62 490 aa13.2□□□□□ -0.3
VPS28-214ENST00000531032 GTF2IRD1Q9UHL9 959 aa13.2□□□□□ -0.3
VPS28-214ENST00000531032 PCDHA1Q9Y5I3 950 aa13.2□□□□□ -0.3
VPS28-214ENST00000531032 MRVI1Q9Y6F6 885 aa13.2□□□□□ -0.3
VPS28-214ENST00000531032 PTPRSQ13332 1948 aa13.19□□□□□ -0.3
VPS28-214ENST00000531032 HAS3O00219 553 aa13.19□□□□□ -0.3
VPS28-214ENST00000531032 CYP21A2P08686 494 aa13.19□□□□□ -0.3
VPS28-214ENST00000531032 SELPP16109 830 aa13.19□□□□□ -0.3
VPS28-214ENST00000531032 TRDNQ13061 729 aa13.19□□□□□ -0.3
VPS28-214ENST00000531032 LAMC2Q13753 1193 aa13.19□□□□□ -0.3
VPS28-214ENST00000531032 GRM4Q14833 912 aa13.19□□□□□ -0.3
VPS28-214ENST00000531032 GPNMBQ14956 572 aa13.19□□□□□ -0.3
VPS28-214ENST00000531032 CCDC85BQ15834 202 aaPredicted RBP13.19□□□□□ -0.3
VPS28-214ENST00000531032 HERC6Q8IVU3 1022 aa13.19□□□□□ -0.3
VPS28-214ENST00000531032 RUFY2Q8WXA3 655 aa13.19□□□□□ -0.3
VPS28-214ENST00000531032 ASB2Q96Q27 587 aa13.19□□□□□ -0.3
VPS28-214ENST00000531032 FTOQ9C0B1 505 aaKnown RBP eCLIP13.19□□□□□ -0.31e-6■■□□□ 11.8
VPS28-214ENST00000531032 RIOX1Q9H6W3 641 aa13.19□□□□□ -0.3
VPS28-214ENST00000531032 HDAC6Q9UBN7 1215 aa13.19□□□□□ -0.3
VPS28-214ENST00000531032 U3KPZ7 1027 aaPredicted RBP13.19□□□□□ -0.3
VPS28-214ENST00000531032 MYH7BA7E2Y1 1941 aa13.19□□□□□ -0.3
VPS28-214ENST00000531032 PARNO95453 639 aaKnown RBP13.18□□□□□ -0.3
VPS28-214ENST00000531032 ZNF286BP0CG31 522 aa13.18□□□□□ -0.3
VPS28-214ENST00000531032 POU3F3P20264 500 aaPredicted RBP13.18□□□□□ -0.3
VPS28-214ENST00000531032 CHMLP26374 656 aa13.18□□□□□ -0.3
VPS28-214ENST00000531032 HOXA13P31271 388 aaPredicted RBP13.18□□□□□ -0.3
VPS28-214ENST00000531032 PSEN2P49810 448 aa13.18□□□□□ -0.3
VPS28-214ENST00000531032 MRPS5P82675 430 aaKnown RBP13.18□□□□□ -0.3
VPS28-214ENST00000531032 PTH1RQ03431 593 aa13.18□□□□□ -0.3
VPS28-214ENST00000531032 TRAF1Q13077 416 aa13.18□□□□□ -0.3
VPS28-214ENST00000531032 MFSD10Q14728 455 aa13.18□□□□□ -0.3
VPS28-214ENST00000531032 PGM5Q15124 567 aa13.18□□□□□ -0.3
VPS28-214ENST00000531032 KCNV1Q6PIU1 500 aa13.18□□□□□ -0.3
VPS28-214ENST00000531032 LRRC8DQ7L1W4 858 aa13.18□□□□□ -0.3
VPS28-214ENST00000531032 VSIG10LQ86VR7 867 aa13.18□□□□□ -0.3
VPS28-214ENST00000531032 DHX37Q8IY37 1157 aaKnown RBP13.18□□□□□ -0.3
VPS28-214ENST00000531032 C7orf31Q8N865 590 aa13.18□□□□□ -0.3
VPS28-214ENST00000531032 IL31RAQ8NI17 732 aa13.18□□□□□ -0.3
VPS28-214ENST00000531032 XIRP2A4UGR9 3374 aa13.18□□□□□ -0.3
VPS28-214ENST00000531032 KIF28PB7ZC32 967 aa13.17□□□□□ -0.3
VPS28-214ENST00000531032 TNFRSF10AO00220 468 aa13.17□□□□□ -0.3
VPS28-214ENST00000531032 CYTH3O43739 400 aa13.17□□□□□ -0.3
VPS28-214ENST00000531032 PPFIA4O75335 1185 aa13.17□□□□□ -0.3
VPS28-214ENST00000531032 ARHGEF15O94989 841 aa13.17□□□□□ -0.3
VPS28-214ENST00000531032 CXCL10P02778 98 aa13.17□□□□□ -0.3
VPS28-214ENST00000531032 TGFB3P10600 412 aa13.17□□□□□ -0.3
VPS28-214ENST00000531032 CKBP12277 381 aa13.17□□□□□ -0.3
VPS28-214ENST00000531032 MYCLP12524 364 aaPredicted RBP13.17□□□□□ -0.3
VPS28-214ENST00000531032 WDR5P61964 334 aaKnown RBP13.17□□□□□ -0.3
VPS28-214ENST00000531032 TAP1Q03518 808 aa13.17□□□□□ -0.3
VPS28-214ENST00000531032 TROAPQ12815 778 aa13.17□□□□□ -0.3
VPS28-214ENST00000531032 PTK7Q13308 1070 aa13.17□□□□□ -0.3
VPS28-214ENST00000531032 KIAA0753Q2KHM9 967 aa13.17□□□□□ -0.3
VPS28-214ENST00000531032 CELF3Q5SZQ8 465 aaKnown RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms