RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 ALDH8A1Q9H2A2 487 aaPredicted RBP11.74□□□□□ -0.53
VPS28-204ENST00000526054 ZSWIM6Q9HCJ5 1215 aa11.74□□□□□ -0.53
VPS28-204ENST00000526054 CXXC1Q9P0U4 656 aaPredicted RBP11.74□□□□□ -0.53
VPS28-204ENST00000526054 MSRAQ9UJ68 235 aa11.74□□□□□ -0.53
VPS28-204ENST00000526054 TTC28Q96AY4 2481 aa11.74□□□□□ -0.53
VPS28-204ENST00000526054 PALM3A6NDB9 673 aaPredicted RBP11.73□□□□□ -0.53
VPS28-204ENST00000526054 KLRF2D3W0D1 207 aa11.73□□□□□ -0.53
VPS28-204ENST00000526054 MYL3P08590 195 aa11.73□□□□□ -0.53
VPS28-204ENST00000526054 GNAQP50148 359 aa11.73□□□□□ -0.53
VPS28-204ENST00000526054 RCAN1P53805 252 aa11.73□□□□□ -0.53
VPS28-204ENST00000526054 PURAQ00577 322 aaKnown RBP11.73□□□□□ -0.53
VPS28-204ENST00000526054 USH1GQ495M9 461 aa11.73□□□□□ -0.53
VPS28-204ENST00000526054 BRDTQ58F21 947 aaPredicted RBP11.73□□□□□ -0.53
VPS28-204ENST00000526054 OTOP2Q7RTS6 562 aa11.73□□□□□ -0.53
VPS28-204ENST00000526054 MICU3Q86XE3 530 aa11.73□□□□□ -0.53
VPS28-204ENST00000526054 FBXL16Q8N461 479 aa11.73□□□□□ -0.53
VPS28-204ENST00000526054 USP38Q8NB14 1042 aa11.73□□□□□ -0.53
VPS28-204ENST00000526054 DNERQ8NFT8 737 aa11.73□□□□□ -0.53
VPS28-204ENST00000526054 SCFD2Q8WU76 684 aa11.73□□□□□ -0.53
VPS28-204ENST00000526054 LZTS2Q9BRK4 669 aa11.73□□□□□ -0.53
VPS28-204ENST00000526054 MYL10Q9BUA6 226 aa11.73□□□□□ -0.53
VPS28-204ENST00000526054 UBA5Q9GZZ9 404 aa11.73□□□□□ -0.53
VPS28-204ENST00000526054 TRMT13Q9NUP7 481 aaKnown RBP11.73□□□□□ -0.53
VPS28-204ENST00000526054 MAD2L2Q9UI95 211 aa11.73□□□□□ -0.53
VPS28-204ENST00000526054 BAZ2BQ9UIF8 2168 aaKnown RBP11.73□□□□□ -0.53
VPS28-204ENST00000526054 SCN5AQ14524 2016 aa11.72□□□□□ -0.53
VPS28-204ENST00000526054 KLF18A0A0U1RQI7 1052 aa11.72□□□□□ -0.53
VPS28-204ENST00000526054 RBM47A0AV96 593 aaKnown RBP11.72□□□□□ -0.53
VPS28-204ENST00000526054 B4DLN1 442 aa11.72□□□□□ -0.53
VPS28-204ENST00000526054 NKRFO15226 690 aaKnown RBP eCLIP11.72□□□□□ -0.53
VPS28-204ENST00000526054 ZBTB43O43298 467 aa11.72□□□□□ -0.53
VPS28-204ENST00000526054 SUPT20HL2P0C7V6 817 aa11.72□□□□□ -0.53
VPS28-204ENST00000526054 EDNRBP24530 442 aa11.72□□□□□ -0.53
VPS28-204ENST00000526054 MRPL12P52815 198 aaKnown RBP11.72□□□□□ -0.53
VPS28-204ENST00000526054 CDC37Q16543 378 aaPredicted RBP11.72□□□□□ -0.53
VPS28-204ENST00000526054 FAM47CQ5HY64 1035 aa11.72□□□□□ -0.53
VPS28-204ENST00000526054 APOA5Q6Q788 366 aa11.72□□□□□ -0.53
VPS28-204ENST00000526054 ADGRF4Q8IZF3 695 aa11.72□□□□□ -0.53
VPS28-204ENST00000526054 STAG2Q8N3U4 1231 aa11.72□□□□□ -0.53
VPS28-204ENST00000526054 BRF1Q92994 677 aa11.72□□□□□ -0.53
VPS28-204ENST00000526054 IL17RAQ96F46 866 aa11.72□□□□□ -0.53
VPS28-204ENST00000526054 SCLYQ96I15 445 aa11.72□□□□□ -0.53
VPS28-204ENST00000526054 MTG1Q9BT17 334 aaPredicted RBP11.72□□□□□ -0.53
VPS28-204ENST00000526054 C22orf23Q9BZE7 217 aa11.72□□□□□ -0.53
VPS28-204ENST00000526054 UPF3BQ9BZI7 483 aaKnown RBP11.72□□□□□ -0.53
VPS28-204ENST00000526054 PRDM12Q9H4Q4 367 aa11.72□□□□□ -0.53
VPS28-204ENST00000526054 PDRG1Q9NUG6 133 aa11.72□□□□□ -0.53
VPS28-204ENST00000526054 RBM28Q9NW13 759 aaKnown RBP11.72□□□□□ -0.53
VPS28-204ENST00000526054 NAP1L2Q9ULW6 460 aaPredicted RBP11.72□□□□□ -0.53
VPS28-204ENST00000526054 KIAA1217Q5T5P2 1943 aa11.72□□□□□ -0.53
VPS28-204ENST00000526054 MUC3AQ02505 3323 aa11.71□□□□□ -0.53
VPS28-204ENST00000526054 GOLGA8AA7E2F4 631 aa11.71□□□□□ -0.53
VPS28-204ENST00000526054 GOLGA8BA8MQT2 603 aa11.71□□□□□ -0.53
VPS28-204ENST00000526054 ZBBXA8MT70 800 aa11.71□□□□□ -0.53
VPS28-204ENST00000526054 PFKMP08237 780 aa11.71□□□□□ -0.53
VPS28-204ENST00000526054 CYP2C9P11712 490 aa11.71□□□□□ -0.53
VPS28-204ENST00000526054 RXRAP19793 462 aa11.71□□□□□ -0.53
VPS28-204ENST00000526054 APOBRQ0VD83 1088 aa11.71□□□□□ -0.53
VPS28-204ENST00000526054 RTN1Q16799 776 aa11.71□□□□□ -0.53
VPS28-204ENST00000526054 RAB11FIP4Q86YS3 637 aa11.71□□□□□ -0.53
VPS28-204ENST00000526054 RPUSD2Q8IZ73 545 aaKnown RBP11.71□□□□□ -0.53
VPS28-204ENST00000526054 SYMPKQ92797 1274 aaKnown RBP11.71□□□□□ -0.53
VPS28-204ENST00000526054 AGXT2Q9BYV1 514 aa11.71□□□□□ -0.53
VPS28-204ENST00000526054 NKX2-4Q9H2Z4 354 aa11.71□□□□□ -0.53
VPS28-204ENST00000526054 CPVLQ9H3G5 476 aa11.71□□□□□ -0.53
VPS28-204ENST00000526054 SLC28A3Q9HAS3 691 aa11.71□□□□□ -0.53
VPS28-204ENST00000526054 SLC4A7Q9Y6M7 1214 aa11.71□□□□□ -0.53
VPS28-204ENST00000526054 REV3LO60673 3130 aa11.7□□□□□ -0.54
VPS28-204ENST00000526054 ABCB11O95342 1321 aa11.7□□□□□ -0.54
VPS28-204ENST00000526054 KPNA6O60684 536 aa11.7□□□□□ -0.54
VPS28-204ENST00000526054 TXNP10599 105 aaKnown RBP11.7□□□□□ -0.54
VPS28-204ENST00000526054 SMARCA1P28370 1054 aa11.7□□□□□ -0.54
VPS28-204ENST00000526054 METAP2P50579 478 aaKnown RBP eCLIP11.7□□□□□ -0.54
VPS28-204ENST00000526054 TRAF1Q13077 416 aa11.7□□□□□ -0.54
VPS28-204ENST00000526054 TTLL4Q14679 1199 aa11.7□□□□□ -0.54
VPS28-204ENST00000526054 ANKRD1Q15327 319 aa11.7□□□□□ -0.54
VPS28-204ENST00000526054 FANCBQ8NB91 859 aa11.7□□□□□ -0.54
VPS28-204ENST00000526054 PPM1EQ8WY54 764 aa11.7□□□□□ -0.54
VPS28-204ENST00000526054 COPS5Q92905 334 aa11.7□□□□□ -0.54
VPS28-204ENST00000526054 SPZ1Q9BXG8 430 aa11.7□□□□□ -0.54
VPS28-204ENST00000526054 RIOX1Q9H6W3 641 aa11.7□□□□□ -0.54
VPS28-204ENST00000526054 JMJD4Q9H9V9 463 aa11.7□□□□□ -0.54
VPS28-204ENST00000526054 VAT1LQ9HCJ6 419 aa11.7□□□□□ -0.54
VPS28-204ENST00000526054 BRPF3Q9ULD4 1205 aa11.7□□□□□ -0.54
VPS28-204ENST00000526054 YBX2Q9Y2T7 364 aaKnown RBP11.7□□□□□ -0.54
VPS28-204ENST00000526054 NID2Q14112 1375 aa11.69□□□□□ -0.54
VPS28-204ENST00000526054 CCDC196A0A1B0GTZ2 297 aa11.69□□□□□ -0.54
VPS28-204ENST00000526054 A6NJR5 290 aa11.69□□□□□ -0.54
VPS28-204ENST00000526054 ARIH2O95376 493 aa11.69□□□□□ -0.54
VPS28-204ENST00000526054 ATP2A2P16615 1042 aaKnown RBP11.69□□□□□ -0.54
VPS28-204ENST00000526054 RBM25P49756 843 aaKnown RBP11.69□□□□□ -0.54
VPS28-204ENST00000526054 RABGGTBP53611 331 aa11.69□□□□□ -0.54
VPS28-204ENST00000526054 TOB2Q14106 344 aaPredicted RBP11.69□□□□□ -0.54
VPS28-204ENST00000526054 QRICH1Q2TAL8 776 aa11.69□□□□□ -0.54
VPS28-204ENST00000526054 NBPF20Q3BBV1 942 aa11.69□□□□□ -0.54
VPS28-204ENST00000526054 TJAP1Q5JTD0 557 aa11.69□□□□□ -0.54
VPS28-204ENST00000526054 PPP2R2DQ66LE6 453 aa11.69□□□□□ -0.54
VPS28-204ENST00000526054 NFRKBQ6P4R8 1299 aa11.69□□□□□ -0.54
VPS28-204ENST00000526054 TMTC3Q6ZXV5 915 aa11.69□□□□□ -0.54
VPS28-204ENST00000526054 DEFB128Q7Z7B8 93 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms