RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 TRIM58Q8NG06 486 aa12.3□□□□□ -0.44
HDAC9-228ENST00000524023 TBC1D16Q8TBP0 767 aa12.3□□□□□ -0.44
HDAC9-228ENST00000524023 CAGE1Q8TC20 777 aa12.3□□□□□ -0.44
HDAC9-228ENST00000524023 DDX12PQ92771 950 aa12.3□□□□□ -0.44
HDAC9-228ENST00000524023 CCDC102AQ96A19 550 aa12.3□□□□□ -0.44
HDAC9-228ENST00000524023 IFIH1Q9BYX4 1025 aaKnown RBP12.3□□□□□ -0.44
HDAC9-228ENST00000524023 LRRC27Q9C0I9 530 aa12.3□□□□□ -0.44
HDAC9-228ENST00000524023 MMRN2Q9H8L6 949 aa12.3□□□□□ -0.44
HDAC9-228ENST00000524023 GPCPD1Q9NPB8 672 aa12.3□□□□□ -0.44
HDAC9-228ENST00000524023 RIC8AQ9NPQ8 531 aa12.3□□□□□ -0.44
HDAC9-228ENST00000524023 JADE2Q9NQC1 790 aa12.3□□□□□ -0.44
HDAC9-228ENST00000524023 PCDHA13Q9Y5I0 950 aa12.3□□□□□ -0.44
HDAC9-228ENST00000524023 MYH7BA7E2Y1 1941 aa12.3□□□□□ -0.44
HDAC9-228ENST00000524023 EIF4A3P38919 411 aaKnown RBP12.3□□□□□ -0.44
HDAC9-228ENST00000524023 TNNI2P48788 182 aa12.3□□□□□ -0.44
HDAC9-228ENST00000524023 KIF11P52732 1056 aa12.3□□□□□ -0.44
HDAC9-228ENST00000524023 EIF6P56537 245 aaKnown RBP12.3□□□□□ -0.44
HDAC9-228ENST00000524023 PICALMQ13492 652 aa12.3□□□□□ -0.44
HDAC9-228ENST00000524023 PPP4R3AQ6IN85 833 aa12.3□□□□□ -0.44
HDAC9-228ENST00000524023 PPP1R18Q6NYC8 613 aa12.3□□□□□ -0.44
HDAC9-228ENST00000524023 DPP8Q6V1X1 898 aaPredicted RBP12.3□□□□□ -0.44
HDAC9-228ENST00000524023 FNBP4Q8N3X1 1017 aaPredicted RBP12.3□□□□□ -0.44
HDAC9-228ENST00000524023 SMCR8Q8TEV9 937 aaPredicted RBP12.3□□□□□ -0.44
HDAC9-228ENST00000524023 SH2D4AQ9H788 454 aa12.3□□□□□ -0.44
HDAC9-228ENST00000524023 JMJD4Q9H9V9 463 aa12.3□□□□□ -0.44
HDAC9-228ENST00000524023 MED4Q9NPJ6 270 aa12.3□□□□□ -0.44
HDAC9-228ENST00000524023 JRKLQ9Y4A0 524 aa12.3□□□□□ -0.44
HDAC9-228ENST00000524023 THSD7AQ9UPZ6 1657 aa12.3□□□□□ -0.44
HDAC9-228ENST00000524023 PNMA6FA0A0J9YX94 578 aa12.29□□□□□ -0.44
HDAC9-228ENST00000524023 TACC1O75410 805 aa12.29□□□□□ -0.44
HDAC9-228ENST00000524023 BBOX1O75936 387 aa12.29□□□□□ -0.44
HDAC9-228ENST00000524023 CLK2P49760 499 aaKnown RBP12.29□□□□□ -0.44
HDAC9-228ENST00000524023 ZNF543Q08ER8 600 aa12.29□□□□□ -0.44
HDAC9-228ENST00000524023 ECM1Q16610 540 aa12.29□□□□□ -0.44
HDAC9-228ENST00000524023 ZSCAN26Q16670 478 aa12.29□□□□□ -0.44
HDAC9-228ENST00000524023 UBE2SQ16763 222 aa12.29□□□□□ -0.44
HDAC9-228ENST00000524023 FOXR2Q6PJQ5 311 aa12.29□□□□□ -0.44
HDAC9-228ENST00000524023 CLEC10AQ8IUN9 316 aa12.29□□□□□ -0.44
HDAC9-228ENST00000524023 GLIS3Q8NEA6 775 aa12.29□□□□□ -0.44
HDAC9-228ENST00000524023 SNX12Q9UMY4 172 aa12.29□□□□□ -0.44
HDAC9-228ENST00000524023 CAPN6Q9Y6Q1 641 aa12.29□□□□□ -0.44
HDAC9-228ENST00000524023 LRRC53A6NM62 1247 aa12.29□□□□□ -0.44
HDAC9-228ENST00000524023 PPP1R11O60927 126 aaPredicted RBP12.29□□□□□ -0.44
HDAC9-228ENST00000524023 TTLL1O95922 423 aa12.29□□□□□ -0.44
HDAC9-228ENST00000524023 SERPINB2P05120 415 aa12.29□□□□□ -0.44
HDAC9-228ENST00000524023 ADRA2BP18089 450 aa12.29□□□□□ -0.44
HDAC9-228ENST00000524023 AARSP49588 968 aaKnown RBP eCLIP12.29□□□□□ -0.44
HDAC9-228ENST00000524023 LRRC41Q15345 812 aa12.29□□□□□ -0.44
HDAC9-228ENST00000524023 IQCEQ6IPM2 695 aa12.29□□□□□ -0.44
HDAC9-228ENST00000524023 RRAGAQ7L523 313 aa12.29□□□□□ -0.44
HDAC9-228ENST00000524023 CREG2Q8IUH2 290 aa12.29□□□□□ -0.44
HDAC9-228ENST00000524023 ADGRF4Q8IZF3 695 aa12.29□□□□□ -0.44
HDAC9-228ENST00000524023 BAP1Q92560 729 aa12.29□□□□□ -0.44
HDAC9-228ENST00000524023 HAS1Q92839 578 aa12.29□□□□□ -0.44
HDAC9-228ENST00000524023 DNAJC19Q96DA6 116 aa12.29□□□□□ -0.44
HDAC9-228ENST00000524023 TSG101Q99816 390 aa12.29□□□□□ -0.44
HDAC9-228ENST00000524023 DEF6Q9H4E7 631 aa12.29□□□□□ -0.44
HDAC9-228ENST00000524023 MLXIPQ9HAP2 919 aa12.29□□□□□ -0.44
HDAC9-228ENST00000524023 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.28□□□□□ -0.44
HDAC9-228ENST00000524023 C6orf229H3BNL8 230 aa12.28□□□□□ -0.44
HDAC9-228ENST00000524023 AKR1B10O60218 316 aa12.28□□□□□ -0.44
HDAC9-228ENST00000524023 PHACTR2O75167 634 aa12.28□□□□□ -0.44
HDAC9-228ENST00000524023 ACTN2P35609 894 aa12.28□□□□□ -0.44
HDAC9-228ENST00000524023 TNNT3P45378 269 aaPredicted RBP12.28□□□□□ -0.44
HDAC9-228ENST00000524023 GTF2IP78347 998 aa12.28□□□□□ -0.44
HDAC9-228ENST00000524023 MYOCDQ8IZQ8 938 aa12.28□□□□□ -0.44
HDAC9-228ENST00000524023 PROM2Q8N271 834 aa12.28□□□□□ -0.44
HDAC9-228ENST00000524023 GOLGA5Q8TBA6 731 aa12.28□□□□□ -0.44
HDAC9-228ENST00000524023 EDEM3Q9BZQ6 932 aa12.28□□□□□ -0.44
HDAC9-228ENST00000524023 DDX4Q9NQI0 724 aaKnown RBP12.28□□□□□ -0.44
HDAC9-228ENST00000524023 LRRC4BQ9NT99 713 aa12.28□□□□□ -0.44
HDAC9-228ENST00000524023 DDX25Q9UHL0 483 aaKnown RBP12.28□□□□□ -0.44
HDAC9-228ENST00000524023 HPCAL4Q9UM19 191 aa12.28□□□□□ -0.44
HDAC9-228ENST00000524023 ZMYND10O75800 440 aa12.28□□□□□ -0.44
HDAC9-228ENST00000524023 MOCS3O95396 460 aa12.28□□□□□ -0.44
HDAC9-228ENST00000524023 GYS1P13807 737 aa12.28□□□□□ -0.44
HDAC9-228ENST00000524023 PRLRP16471 622 aa12.28□□□□□ -0.44
HDAC9-228ENST00000524023 ERCC3P19447 782 aa12.28□□□□□ -0.44
HDAC9-228ENST00000524023 HOXA10P31260 410 aaPredicted RBP12.28□□□□□ -0.44
HDAC9-228ENST00000524023 C2orf54Q08AI8 447 aa12.28□□□□□ -0.44
HDAC9-228ENST00000524023 COASYQ13057 564 aa12.28□□□□□ -0.44
HDAC9-228ENST00000524023 SEPT2Q15019 361 aa12.28□□□□□ -0.44
HDAC9-228ENST00000524023 PDXDC1Q6P996 788 aa12.28□□□□□ -0.44
HDAC9-228ENST00000524023 CCNI2Q6ZMN8 369 aaPredicted RBP12.28□□□□□ -0.44
HDAC9-228ENST00000524023 ZNF572Q7Z3I7 529 aaPredicted RBP12.28□□□□□ -0.44
HDAC9-228ENST00000524023 COG1Q8WTW3 980 aa12.28□□□□□ -0.44
HDAC9-228ENST00000524023 CUL5Q93034 780 aa12.28□□□□□ -0.44
HDAC9-228ENST00000524023 LTBP1Q14766 1721 aa12.27□□□□□ -0.44
HDAC9-228ENST00000524023 ARFGEF1Q9Y6D6 1849 aa12.27□□□□□ -0.44
HDAC9-228ENST00000524023 MYH4Q9Y623 1939 aa12.27□□□□□ -0.44
HDAC9-228ENST00000524023 UBR3Q6ZT12 1888 aa12.27□□□□□ -0.45
HDAC9-228ENST00000524023 PJA2O43164 708 aa12.27□□□□□ -0.45
HDAC9-228ENST00000524023 SYF2O95926 243 aaKnown RBP12.27□□□□□ -0.45
HDAC9-228ENST00000524023 MYBL2P10244 700 aa12.27□□□□□ -0.45
HDAC9-228ENST00000524023 MAGEA1P43355 309 aa12.27□□□□□ -0.45
HDAC9-228ENST00000524023 MRPL12P52815 198 aaKnown RBP12.27□□□□□ -0.45
HDAC9-228ENST00000524023 ATP2B2Q01814 1243 aa12.27□□□□□ -0.45
HDAC9-228ENST00000524023 KCNMA1Q12791 1236 aa12.27□□□□□ -0.45
HDAC9-228ENST00000524023 ASTE1Q2TB18 679 aaPredicted RBP12.27□□□□□ -0.45
HDAC9-228ENST00000524023 ZCWPW2Q504Y3 356 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms