RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 UBE2SQ16763 222 aa13.65□□□□□ -0.22
PDLIM5-208ENST00000504489 ARHGEF16Q5VV41 709 aa13.65□□□□□ -0.22
PDLIM5-208ENST00000504489 MCTP2Q6DN12 878 aa13.65□□□□□ -0.22
PDLIM5-208ENST00000504489 BICD2Q8TD16 824 aa13.65□□□□□ -0.22
PDLIM5-208ENST00000504489 ABHD8Q96I13 439 aa13.65□□□□□ -0.22
PDLIM5-208ENST00000504489 KATNBL1Q9H079 304 aa13.65□□□□□ -0.22
PDLIM5-208ENST00000504489 HMX1Q9NP08 348 aaPredicted RBP13.65□□□□□ -0.22
PDLIM5-208ENST00000504489 CNPY2Q9Y2B0 182 aa13.65□□□□□ -0.22
PDLIM5-208ENST00000504489 MYH9P35579 1960 aaKnown RBP13.65□□□□□ -0.22
PDLIM5-208ENST00000504489 SPDYE3A6NKU9 549 aa13.64□□□□□ -0.23
PDLIM5-208ENST00000504489 K7ELQ4 463 aaPredicted RBP13.64□□□□□ -0.23
PDLIM5-208ENST00000504489 NR3C2P08235 984 aa13.64□□□□□ -0.23
PDLIM5-208ENST00000504489 ZNF865P0CJ78 1059 aaPredicted RBP13.64□□□□□ -0.23
PDLIM5-208ENST00000504489 CCL5P13501 91 aa13.64□□□□□ -0.23
PDLIM5-208ENST00000504489 NLRP5P59047 1200 aa13.64□□□□□ -0.23
PDLIM5-208ENST00000504489 PDE4DQ08499 809 aa13.64□□□□□ -0.23
PDLIM5-208ENST00000504489 AP3B2Q13367 1082 aa13.64□□□□□ -0.23
PDLIM5-208ENST00000504489 ACVR2BQ13705 512 aa13.64□□□□□ -0.23
PDLIM5-208ENST00000504489 MTFR1Q15390 333 aa13.64□□□□□ -0.23
PDLIM5-208ENST00000504489 PRAMEF19Q5SWL8 479 aa13.64□□□□□ -0.23
PDLIM5-208ENST00000504489 DAGLBQ8NCG7 672 aa13.64□□□□□ -0.23
PDLIM5-208ENST00000504489 TRPV1Q8NER1 839 aa13.64□□□□□ -0.23
PDLIM5-208ENST00000504489 PDCD2LQ9BRP1 358 aa13.64□□□□□ -0.23
PDLIM5-208ENST00000504489 PHF20Q9BVI0 1012 aa13.64□□□□□ -0.23
PDLIM5-208ENST00000504489 UNC93B1Q9H1C4 597 aa13.64□□□□□ -0.23
PDLIM5-208ENST00000504489 VTA1Q9NP79 307 aa13.64□□□□□ -0.23
PDLIM5-208ENST00000504489 PCDHA6Q9UN73 950 aa13.64□□□□□ -0.23
PDLIM5-208ENST00000504489 PCDHA4Q9UN74 947 aa13.64□□□□□ -0.23
PDLIM5-208ENST00000504489 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.64□□□□□ -0.23
PDLIM5-208ENST00000504489 PCDHA8Q9Y5H6 950 aa13.64□□□□□ -0.23
PDLIM5-208ENST00000504489 KAT6AQ92794 2004 aa13.63□□□□□ -0.23
PDLIM5-208ENST00000504489 EIF2AK2P19525 551 aaKnown RBP13.63□□□□□ -0.23
PDLIM5-208ENST00000504489 CCND3P30281 292 aaPredicted RBP13.63□□□□□ -0.23
PDLIM5-208ENST00000504489 PGM5Q15124 567 aa13.63□□□□□ -0.23
PDLIM5-208ENST00000504489 NPY5RQ15761 445 aa13.63□□□□□ -0.23
PDLIM5-208ENST00000504489 STXBP2Q15833 593 aa13.63□□□□□ -0.23
PDLIM5-208ENST00000504489 XRRA1Q6P2D8 792 aa13.63□□□□□ -0.23
PDLIM5-208ENST00000504489 VSIG10LQ86VR7 867 aa13.63□□□□□ -0.23
PDLIM5-208ENST00000504489 REXO1Q8N1G1 1221 aaKnown RBP13.63□□□□□ -0.23
PDLIM5-208ENST00000504489 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.63□□□□□ -0.23
PDLIM5-208ENST00000504489 RNF208Q9H0X6 261 aa13.63□□□□□ -0.23
PDLIM5-208ENST00000504489 EHMT1Q9H9B1 1298 aa13.63□□□□□ -0.23
PDLIM5-208ENST00000504489 PAK6Q9NQU5 681 aaPredicted RBP13.63□□□□□ -0.23
PDLIM5-208ENST00000504489 KIF3AQ9Y496 699 aa13.63□□□□□ -0.23
PDLIM5-208ENST00000504489 DDX49Q9Y6V7 483 aaKnown RBP13.63□□□□□ -0.23
PDLIM5-208ENST00000504489 MYH15Q9Y2K3 1946 aa13.62□□□□□ -0.23
PDLIM5-208ENST00000504489 M0R2N6 131 aa13.62□□□□□ -0.23
PDLIM5-208ENST00000504489 ADAMTS3O15072 1205 aa13.62□□□□□ -0.23
PDLIM5-208ENST00000504489 SEPT4O43236 478 aa13.62□□□□□ -0.23
PDLIM5-208ENST00000504489 EIF3JO75822 258 aaKnown RBP13.62□□□□□ -0.23
PDLIM5-208ENST00000504489 STAM2O75886 525 aa13.62□□□□□ -0.23
PDLIM5-208ENST00000504489 CCND2P30279 289 aa13.62□□□□□ -0.23
PDLIM5-208ENST00000504489 TRIM29Q14134 588 aa13.62□□□□□ -0.23
PDLIM5-208ENST00000504489 PCNX4Q63HM2 1172 aa13.62□□□□□ -0.23
PDLIM5-208ENST00000504489 TAPT1Q6NXT6 567 aa13.62□□□□□ -0.23
PDLIM5-208ENST00000504489 HSCBQ8IWL3 235 aa13.62□□□□□ -0.23
PDLIM5-208ENST00000504489 BLIDQ8IZY5 108 aa13.62□□□□□ -0.23
PDLIM5-208ENST00000504489 FAM184AQ8NB25 1140 aa13.62□□□□□ -0.23
PDLIM5-208ENST00000504489 INTS4Q96HW7 963 aaKnown RBP13.62□□□□□ -0.23
PDLIM5-208ENST00000504489 ANO3Q9BYT9 981 aa13.62□□□□□ -0.23
PDLIM5-208ENST00000504489 GJB4Q9NTQ9 266 aa13.62□□□□□ -0.23
PDLIM5-208ENST00000504489 KCNJ14Q9UNX9 436 aa13.62□□□□□ -0.23
PDLIM5-208ENST00000504489 RBM47A0AV96 593 aaKnown RBP13.61□□□□□ -0.23
PDLIM5-208ENST00000504489 MSCO60682 206 aa13.61□□□□□ -0.23
PDLIM5-208ENST00000504489 MYCP01106 439 aaPredicted RBP13.61□□□□□ -0.23
PDLIM5-208ENST00000504489 GJB1P08034 283 aa13.61□□□□□ -0.23
PDLIM5-208ENST00000504489 CAPN2P17655 700 aa13.61□□□□□ -0.23
PDLIM5-208ENST00000504489 CNGA1P29973 690 aa13.61□□□□□ -0.23
PDLIM5-208ENST00000504489 SREBF1P36956 1147 aa13.61□□□□□ -0.23
PDLIM5-208ENST00000504489 CCDC144BQ3MJ40 725 aa13.61□□□□□ -0.23
PDLIM5-208ENST00000504489 JAKMIP3Q5VZ66 844 aa13.61□□□□□ -0.23
PDLIM5-208ENST00000504489 KRT40Q6A162 431 aa13.61□□□□□ -0.23
PDLIM5-208ENST00000504489 IQSEC1Q6DN90 963 aa13.61□□□□□ -0.23
PDLIM5-208ENST00000504489 IL31RAQ8NI17 732 aa13.61□□□□□ -0.23
PDLIM5-208ENST00000504489 C8orf76Q96K31 380 aa13.61□□□□□ -0.23
PDLIM5-208ENST00000504489 TMEM260Q9NX78 707 aa13.61□□□□□ -0.23
PDLIM5-208ENST00000504489 ZHX1Q9UKY1 873 aaPredicted RBP13.61□□□□□ -0.23
PDLIM5-208ENST00000504489 FAM184BQ9ULE4 1060 aa13.61□□□□□ -0.23
PDLIM5-208ENST00000504489 SMC3Q9UQE7 1217 aa13.61□□□□□ -0.23
PDLIM5-208ENST00000504489 MMP1P03956 469 aa13.6□□□□□ -0.23
PDLIM5-208ENST00000504489 MYCLP12524 364 aaPredicted RBP13.6□□□□□ -0.23
PDLIM5-208ENST00000504489 AKR1A1P14550 325 aa13.6□□□□□ -0.23
PDLIM5-208ENST00000504489 GJB2P29033 226 aa13.6□□□□□ -0.23
PDLIM5-208ENST00000504489 MRPS9P82933 396 aaKnown RBP13.6□□□□□ -0.23
PDLIM5-208ENST00000504489 EEPD1Q7L9B9 569 aa13.6□□□□□ -0.23
PDLIM5-208ENST00000504489 FBXO16Q8IX29 292 aaPredicted RBP13.6□□□□□ -0.23
PDLIM5-208ENST00000504489 FBXO18Q8NFZ0 1043 aa13.6□□□□□ -0.23
PDLIM5-208ENST00000504489 RASGRP4Q8TDF6 673 aa13.6□□□□□ -0.23
PDLIM5-208ENST00000504489 PDGFCQ9NRA1 345 aa13.6□□□□□ -0.23
PDLIM5-208ENST00000504489 DDX20Q9UHI6 824 aaKnown RBP13.6□□□□□ -0.23
PDLIM5-208ENST00000504489 BRCA2P51587 3418 aa13.6□□□□□ -0.23
PDLIM5-208ENST00000504489 RIOK3O14730 519 aaKnown RBP13.59□□□□□ -0.23
PDLIM5-208ENST00000504489 SGPL1O95470 568 aa13.59□□□□□ -0.23
PDLIM5-208ENST00000504489 KRT2P35908 639 aa13.59□□□□□ -0.23
PDLIM5-208ENST00000504489 GJA8P48165 433 aa13.59□□□□□ -0.23
PDLIM5-208ENST00000504489 TNFAIP2Q03169 654 aa13.59□□□□□ -0.23
PDLIM5-208ENST00000504489 KCNV1Q6PIU1 500 aa13.59□□□□□ -0.23
PDLIM5-208ENST00000504489 KRT25Q7Z3Z0 450 aa13.59□□□□□ -0.23
PDLIM5-208ENST00000504489 SCFD2Q8WU76 684 aa13.59□□□□□ -0.23
PDLIM5-208ENST00000504489 CRYGNQ8WXF5 182 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms