RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, human

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CUX1-210	ENST00000497815	STXBP2	Q15833	593 aa		13.58	□□□□□ -0.24
CUX1-210	ENST00000497815	INF2	Q27J81	1249 aa		13.58	□□□□□ -0.24
CUX1-210	ENST00000497815	EARS2	Q5JPH6	523 aa	Known RBP	13.58	□□□□□ -0.24
CUX1-210	ENST00000497815	MSL3	Q8N5Y2	521 aa	Known RBP	13.58	□□□□□ -0.24
CUX1-210	ENST00000497815	TBCK	Q8TEA7	893 aa		13.58	□□□□□ -0.24
CUX1-210	ENST00000497815	TNFRSF25	Q93038	417 aa		13.58	□□□□□ -0.24
CUX1-210	ENST00000497815	MCOLN1	Q9GZU1	580 aa		13.58	□□□□□ -0.24
CUX1-210	ENST00000497815	FRMPD4	Q14CM0	1322 aa		13.58	□□□□□ -0.24
CUX1-210	ENST00000497815	DOCK3	Q8IZD9	2030 aa		13.57	□□□□□ -0.24
CUX1-210	ENST00000497815	LOC102724159	A0A0B4J2E5	919 aa		13.57	□□□□□ -0.24
CUX1-210	ENST00000497815	STX6	O43752	255 aa		13.57	□□□□□ -0.24
CUX1-210	ENST00000497815	IGHA2	P01877	340 aa		13.57	□□□□□ -0.24
CUX1-210	ENST00000497815	CNGA1	P29973	690 aa		13.57	□□□□□ -0.24
CUX1-210	ENST00000497815	ZNF76	P36508	570 aa		13.57	□□□□□ -0.24
CUX1-210	ENST00000497815	SREBF1	P36956	1147 aa		13.57	□□□□□ -0.24
CUX1-210	ENST00000497815	MRPS9	P82933	396 aa	Known RBP	13.57	□□□□□ -0.24
CUX1-210	ENST00000497815	ACVR2B	Q13705	512 aa		13.57	□□□□□ -0.24
CUX1-210	ENST00000497815	PWP2	Q15269	919 aa	Known RBP	13.57	□□□□□ -0.24
CUX1-210	ENST00000497815	FOXD4L5	Q5VV16	416 aa	Predicted RBP	13.57	□□□□□ -0.24
CUX1-210	ENST00000497815	PCNX4	Q63HM2	1172 aa		13.57	□□□□□ -0.24
CUX1-210	ENST00000497815	SEPT14	Q6ZU15	432 aa		13.57	□□□□□ -0.24
CUX1-210	ENST00000497815	FERMT3	Q86UX7	667 aa		13.57	□□□□□ -0.24
CUX1-210	ENST00000497815	VSIG10L	Q86VR7	867 aa		13.57	□□□□□ -0.24
CUX1-210	ENST00000497815	TRPV1	Q8NER1	839 aa		13.57	□□□□□ -0.24
CUX1-210	ENST00000497815	MORC4	Q8TE76	937 aa		13.57	□□□□□ -0.24
CUX1-210	ENST00000497815	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	13.57	□□□□□ -0.24
CUX1-210	ENST00000497815	FOXP1	Q9H334	677 aa	Predicted RBP	13.57	□□□□□ -0.24
CUX1-210	ENST00000497815	EIF3J	O75822	258 aa	Known RBP	13.56	□□□□□ -0.24
CUX1-210	ENST00000497815	ATP2B1	P20020	1258 aa		13.56	□□□□□ -0.24
CUX1-210	ENST00000497815	CCND3	P30281	292 aa	Predicted RBP	13.56	□□□□□ -0.24
CUX1-210	ENST00000497815	COL13A1	Q5TAT6	717 aa	Predicted RBP	13.56	□□□□□ -0.24
CUX1-210	ENST00000497815	NOSTRIN	Q8IVI9	506 aa		13.56	□□□□□ -0.24
CUX1-210	ENST00000497815	ABHD16B	Q9H3Z7	469 aa		13.56	□□□□□ -0.24
CUX1-210	ENST00000497815	PDGFC	Q9NRA1	345 aa		13.56	□□□□□ -0.24
CUX1-210	ENST00000497815	LRRC37A2	A6NM11	1700 aa		13.56	□□□□□ -0.24
CUX1-210	ENST00000497815	ZNF865	P0CJ78	1059 aa	Predicted RBP	13.55	□□□□□ -0.24
CUX1-210	ENST00000497815	CYBA	P13498	195 aa		13.55	□□□□□ -0.24
CUX1-210	ENST00000497815	U2AF2	P26368	475 aa	Known RBP eCLIP	13.55	□□□□□ -0.24	2e-7	■■■■■ 32.4
CUX1-210	ENST00000497815	ADCYAP1R1	P41586	468 aa		13.55	□□□□□ -0.24
CUX1-210	ENST00000497815	LETM2	Q2VYF4	491 aa		13.55	□□□□□ -0.24
CUX1-210	ENST00000497815	CCDC144B	Q3MJ40	725 aa		13.55	□□□□□ -0.24
CUX1-210	ENST00000497815	ANO1	Q5XXA6	986 aa		13.55	□□□□□ -0.24
CUX1-210	ENST00000497815	XRRA1	Q6P2D8	792 aa		13.55	□□□□□ -0.24
CUX1-210	ENST00000497815	CYP2W1	Q8TAV3	490 aa		13.55	□□□□□ -0.24
CUX1-210	ENST00000497815	CRYGN	Q8WXF5	182 aa		13.55	□□□□□ -0.24
CUX1-210	ENST00000497815	UIMC1	Q96RL1	719 aa		13.55	□□□□□ -0.24
CUX1-210	ENST00000497815	KATNBL1	Q9H079	304 aa		13.55	□□□□□ -0.24
CUX1-210	ENST00000497815	VTA1	Q9NP79	307 aa		13.55	□□□□□ -0.24
CUX1-210	ENST00000497815	PKD2L1	Q9P0L9	805 aa		13.55	□□□□□ -0.24
CUX1-210	ENST00000497815	MTMR6	Q9Y217	621 aa		13.55	□□□□□ -0.24
CUX1-210	ENST00000497815	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	13.54	□□□□□ -0.24
CUX1-210	ENST00000497815	RGS20	O76081	388 aa		13.54	□□□□□ -0.24
CUX1-210	ENST00000497815	TDP2	O95551	362 aa		13.54	□□□□□ -0.24
CUX1-210	ENST00000497815	CYP3A4	P08684	503 aa		13.54	□□□□□ -0.24
CUX1-210	ENST00000497815	ITGB5	P18084	799 aa		13.54	□□□□□ -0.24
CUX1-210	ENST00000497815	PKP1	Q13835	747 aa		13.54	□□□□□ -0.24
CUX1-210	ENST00000497815	MTFR1	Q15390	333 aa		13.54	□□□□□ -0.24
CUX1-210	ENST00000497815	GNPTAB	Q3T906	1256 aa		13.54	□□□□□ -0.24
CUX1-210	ENST00000497815	TMEM63B	Q5T3F8	832 aa		13.54	□□□□□ -0.24
CUX1-210	ENST00000497815	MAP3K21	Q5TCX8	1036 aa		13.54	□□□□□ -0.24
CUX1-210	ENST00000497815	TAPT1	Q6NXT6	567 aa		13.54	□□□□□ -0.24
CUX1-210	ENST00000497815	NEK8	Q86SG6	692 aa		13.54	□□□□□ -0.24
CUX1-210	ENST00000497815	NLRX1	Q86UT6	975 aa		13.54	□□□□□ -0.24
CUX1-210	ENST00000497815	LENG1	Q96BZ8	264 aa	Predicted RBP	13.54	□□□□□ -0.24
CUX1-210	ENST00000497815	MXRA8	Q9BRK3	442 aa		13.54	□□□□□ -0.24
CUX1-210	ENST00000497815	WDR11	Q9BZH6	1224 aa		13.54	□□□□□ -0.24
CUX1-210	ENST00000497815	UNC93B1	Q9H1C4	597 aa		13.54	□□□□□ -0.24
CUX1-210	ENST00000497815	HMX1	Q9NP08	348 aa	Predicted RBP	13.54	□□□□□ -0.24
CUX1-210	ENST00000497815	NRBP1	Q9UHY1	535 aa		13.54	□□□□□ -0.24
CUX1-210	ENST00000497815	UBIAD1	Q9Y5Z9	338 aa		13.54	□□□□□ -0.24
CUX1-210	ENST00000497815	MRVI1	Q9Y6F6	885 aa		13.54	□□□□□ -0.24
CUX1-210	ENST00000497815	FAM86B1	E9PN63	330 aa		13.53	□□□□□ -0.24
CUX1-210	ENST00000497815	EDIL3	O43854	480 aa		13.53	□□□□□ -0.24
CUX1-210	ENST00000497815	SORBS3	O60504	671 aa		13.53	□□□□□ -0.24
CUX1-210	ENST00000497815	CCNT1	O60563	726 aa	Known RBP	13.53	□□□□□ -0.24
CUX1-210	ENST00000497815	STAM2	O75886	525 aa		13.53	□□□□□ -0.24
CUX1-210	ENST00000497815	FAM86B2	P0C5J1	330 aa		13.53	□□□□□ -0.24
CUX1-210	ENST00000497815	TXN	P10599	105 aa	Known RBP	13.53	□□□□□ -0.24
CUX1-210	ENST00000497815	CCL5	P13501	91 aa		13.53	□□□□□ -0.24
CUX1-210	ENST00000497815	PTGS1	P23219	599 aa		13.53	□□□□□ -0.24
CUX1-210	ENST00000497815	USP11	P51784	963 aa		13.53	□□□□□ -0.24
CUX1-210	ENST00000497815	REST	Q13127	1097 aa		13.53	□□□□□ -0.24
CUX1-210	ENST00000497815	MTMR1	Q13613	665 aa		13.53	□□□□□ -0.24
CUX1-210	ENST00000497815	CEP55	Q53EZ4	464 aa		13.53	□□□□□ -0.24
CUX1-210	ENST00000497815	PRR16	Q569H4	304 aa		13.53	□□□□□ -0.24
CUX1-210	ENST00000497815	PLA2G4D	Q86XP0	818 aa		13.53	□□□□□ -0.24
CUX1-210	ENST00000497815	SCFD2	Q8WU76	684 aa		13.53	□□□□□ -0.24
CUX1-210	ENST00000497815	ZNF333	Q96JL9	665 aa		13.53	□□□□□ -0.24
CUX1-210	ENST00000497815	INPP4A	Q96PE3	977 aa	Predicted RBP	13.53	□□□□□ -0.24
CUX1-210	ENST00000497815	JADE2	Q9NQC1	790 aa		13.53	□□□□□ -0.24
CUX1-210	ENST00000497815	FAM184B	Q9ULE4	1060 aa		13.53	□□□□□ -0.24
CUX1-210	ENST00000497815	NOL7	Q9UMY1	257 aa	Known RBP	13.53	□□□□□ -0.24
CUX1-210	ENST00000497815	WNT7A	O00755	349 aa		13.52	□□□□□ -0.25
CUX1-210	ENST00000497815	SEPT4	O43236	478 aa		13.52	□□□□□ -0.25
CUX1-210	ENST00000497815	ADCY6	O43306	1168 aa		13.52	□□□□□ -0.25
CUX1-210	ENST00000497815	FIBP	O43427	364 aa		13.52	□□□□□ -0.25
CUX1-210	ENST00000497815	ARIH2	O95376	493 aa		13.52	□□□□□ -0.25
CUX1-210	ENST00000497815	ZSCAN22	P10073	491 aa	Predicted RBP	13.52	□□□□□ -0.25
CUX1-210	ENST00000497815	AR	P10275	920 aa		13.52	□□□□□ -0.25
CUX1-210	ENST00000497815	AKR1A1	P14550	325 aa		13.52	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms