RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 GDPD2Q9HCC8 539 aa10.93□□□□□ -0.66
USP54-214ENST00000492357 HPSEQ9Y251 543 aa10.93□□□□□ -0.66
USP54-214ENST00000492357 DIS3Q9Y2L1 958 aaKnown RBP10.93□□□□□ -0.66
USP54-214ENST00000492357 RIPK3Q9Y572 518 aa10.93□□□□□ -0.66
USP54-214ENST00000492357 THSD7BQ9C0I4 1608 aa10.93□□□□□ -0.66
USP54-214ENST00000492357 IGLV3-22A0A075B6J6 115 aa10.92□□□□□ -0.66
USP54-214ENST00000492357 TLR2O60603 784 aa10.92□□□□□ -0.66
USP54-214ENST00000492357 KINO60870 393 aaKnown RBP10.92□□□□□ -0.66
USP54-214ENST00000492357 FCER1AP12319 257 aa10.92□□□□□ -0.66
USP54-214ENST00000492357 ERCC3P19447 782 aa10.92□□□□□ -0.66
USP54-214ENST00000492357 CCND2P30279 289 aa10.92□□□□□ -0.66
USP54-214ENST00000492357 HOXA13P31271 388 aaPredicted RBP10.92□□□□□ -0.66
USP54-214ENST00000492357 MAP2K2P36507 400 aa10.92□□□□□ -0.66
USP54-214ENST00000492357 ZNF76P36508 570 aa10.92□□□□□ -0.66
USP54-214ENST00000492357 PLS1Q14651 629 aa10.92□□□□□ -0.66
USP54-214ENST00000492357 PGM5Q15124 567 aa10.92□□□□□ -0.66
USP54-214ENST00000492357 ZNF174Q15697 407 aa10.92□□□□□ -0.66
USP54-214ENST00000492357 DEFB115Q30KQ5 88 aa10.92□□□□□ -0.66
USP54-214ENST00000492357 GNPTABQ3T906 1256 aa10.92□□□□□ -0.66
USP54-214ENST00000492357 KCNV1Q6PIU1 500 aa10.92□□□□□ -0.66
USP54-214ENST00000492357 NLRX1Q86UT6 975 aa10.92□□□□□ -0.66
USP54-214ENST00000492357 VSIG10LQ86VR7 867 aa10.92□□□□□ -0.66
USP54-214ENST00000492357 ANKRD35Q8N283 1001 aa10.92□□□□□ -0.66
USP54-214ENST00000492357 FAM133AQ8N9E0 248 aa10.92□□□□□ -0.66
USP54-214ENST00000492357 ENGASEQ8NFI3 743 aa10.92□□□□□ -0.66
USP54-214ENST00000492357 MORC4Q8TE76 937 aa10.92□□□□□ -0.66
USP54-214ENST00000492357 RMDN3Q96TC7 470 aa10.92□□□□□ -0.66
USP54-214ENST00000492357 PTPN18Q99952 460 aa10.92□□□□□ -0.66
USP54-214ENST00000492357 WDR11Q9BZH6 1224 aa10.92□□□□□ -0.66
USP54-214ENST00000492357 FTOQ9C0B1 505 aaKnown RBP eCLIP10.92□□□□□ -0.66
USP54-214ENST00000492357 CCSER1Q9C0I3 900 aa10.92□□□□□ -0.66
USP54-214ENST00000492357 ZFYVE28Q9HCC9 887 aa10.92□□□□□ -0.66
USP54-214ENST00000492357 PXMP2Q9NR77 195 aa10.92□□□□□ -0.66
USP54-214ENST00000492357 SLC5A4Q9NY91 659 aa10.92□□□□□ -0.66
USP54-214ENST00000492357 HOOK1Q9UJC3 728 aaKnown RBP10.92□□□□□ -0.66
USP54-214ENST00000492357 UBIAD1Q9Y5Z9 338 aa10.92□□□□□ -0.66
USP54-214ENST00000492357 SMCHD1A6NHR9 2005 aa10.92□□□□□ -0.66
USP54-214ENST00000492357 DNAJC25-GNG10A0A024R161 153 aa10.91□□□□□ -0.66
USP54-214ENST00000492357 POTEB2H3BUK9 544 aa10.91□□□□□ -0.66
USP54-214ENST00000492357 ADAMTS3O15072 1205 aa10.91□□□□□ -0.66
USP54-214ENST00000492357 CA12O43570 354 aa10.91□□□□□ -0.66
USP54-214ENST00000492357 EDIL3O43854 480 aa10.91□□□□□ -0.66
USP54-214ENST00000492357 MYL1P05976 194 aa10.91□□□□□ -0.66
USP54-214ENST00000492357 ATP2B1P20020 1258 aa10.91□□□□□ -0.66
USP54-214ENST00000492357 EDNRBP24530 442 aa10.91□□□□□ -0.66
USP54-214ENST00000492357 BAATQ14032 418 aaPredicted RBP10.91□□□□□ -0.66
USP54-214ENST00000492357 TAF1CQ15572 869 aaPredicted RBP10.91□□□□□ -0.66
USP54-214ENST00000492357 NOM1Q5C9Z4 860 aaKnown RBP10.91□□□□□ -0.66
USP54-214ENST00000492357 CCDC183Q5T5S1 534 aa10.91□□□□□ -0.66
USP54-214ENST00000492357 ARHGEF16Q5VV41 709 aa10.91□□□□□ -0.66
USP54-214ENST00000492357 POTEEQ6S8J3 1075 aa10.91□□□□□ -0.66
USP54-214ENST00000492357 FCHSD1Q86WN1 690 aa10.91□□□□□ -0.66
USP54-214ENST00000492357 NCAPG2Q86XI2 1143 aa10.91□□□□□ -0.66
USP54-214ENST00000492357 CCAR1Q8IX12 1150 aaKnown RBP10.91□□□□□ -0.66
USP54-214ENST00000492357 FSIP1Q8NA03 581 aa10.91□□□□□ -0.66
USP54-214ENST00000492357 ERMNQ8TAM6 284 aa10.91□□□□□ -0.66
USP54-214ENST00000492357 ETNPPLQ8TBG4 499 aa10.91□□□□□ -0.66
USP54-214ENST00000492357 NEK9Q8TD19 979 aa10.91□□□□□ -0.66
USP54-214ENST00000492357 GPT2Q8TD30 523 aa10.91□□□□□ -0.66
USP54-214ENST00000492357 LENG9Q96B70 501 aa10.91□□□□□ -0.66
USP54-214ENST00000492357 INPP4AQ96PE3 977 aaPredicted RBP10.91□□□□□ -0.66
USP54-214ENST00000492357 MXRA8Q9BRK3 442 aa10.91□□□□□ -0.66
USP54-214ENST00000492357 PAGR1Q9BTK6 254 aa10.91□□□□□ -0.66
USP54-214ENST00000492357 HOMER2Q9NSB8 354 aa10.91□□□□□ -0.66
USP54-214ENST00000492357 TBC1D22BQ9NU19 505 aa10.91□□□□□ -0.66
USP54-214ENST00000492357 CCDC39Q9UFE4 941 aa10.91□□□□□ -0.66
USP54-214ENST00000492357 PCDHA12Q9UN75 941 aa10.91□□□□□ -0.66
USP54-214ENST00000492357 IVNS1ABPQ9Y6Y0 642 aa10.91□□□□□ -0.66
USP54-214ENST00000492357 KDM3AQ9Y4C1 1321 aa10.9□□□□□ -0.66
USP54-214ENST00000492357 SLC15A5A6NIM6 579 aa10.9□□□□□ -0.66
USP54-214ENST00000492357 ASB14A6NK59 587 aa10.9□□□□□ -0.66
USP54-214ENST00000492357 IGF2BP3O00425 579 aaKnown RBP eCLIP10.9□□□□□ -0.66
USP54-214ENST00000492357 MARCH6O60337 910 aa10.9□□□□□ -0.66
USP54-214ENST00000492357 GADD45BO75293 160 aaPredicted RBP10.9□□□□□ -0.66
USP54-214ENST00000492357 EIF3JO75822 258 aaKnown RBP10.9□□□□□ -0.66
USP54-214ENST00000492357 TDP2O95551 362 aa10.9□□□□□ -0.66
USP54-214ENST00000492357 NR3C2P08235 984 aa10.9□□□□□ -0.66
USP54-214ENST00000492357 TGFB3P10600 412 aa10.9□□□□□ -0.66
USP54-214ENST00000492357 MARCKSP29966 332 aaPredicted RBP10.9□□□□□ -0.66
USP54-214ENST00000492357 ICAM3P32942 547 aa10.9□□□□□ -0.66
USP54-214ENST00000492357 UBA7P41226 1012 aa10.9□□□□□ -0.66
USP54-214ENST00000492357 NBR1Q14596 966 aa10.9□□□□□ -0.66
USP54-214ENST00000492357 STXBP2Q15833 593 aa10.9□□□□□ -0.66
USP54-214ENST00000492357 HAUS3Q68CZ6 603 aa10.9□□□□□ -0.66
USP54-214ENST00000492357 SHC4Q6S5L8 630 aa10.9□□□□□ -0.66
USP54-214ENST00000492357 C17orf99Q6UX52 265 aa10.9□□□□□ -0.66
USP54-214ENST00000492357 SLC30A10Q6XR72 485 aa10.9□□□□□ -0.66
USP54-214ENST00000492357 RBM43Q6ZSC3 357 aaKnown RBP10.9□□□□□ -0.66
USP54-214ENST00000492357 FMR1NBQ8N0W7 255 aaPredicted RBP10.9□□□□□ -0.66
USP54-214ENST00000492357 GIMAP8Q8ND71 665 aaPredicted RBP10.9□□□□□ -0.66
USP54-214ENST00000492357 RDM1Q8NG50 284 aa10.9□□□□□ -0.66
USP54-214ENST00000492357 TBC1D5Q92609 795 aa10.9□□□□□ -0.66
USP54-214ENST00000492357 SLC5A5Q92911 643 aa10.9□□□□□ -0.66
USP54-214ENST00000492357 CHAMP1Q96JM3 812 aa10.9□□□□□ -0.66
USP54-214ENST00000492357 GTPBP4Q9BZE4 634 aaKnown RBP10.9□□□□□ -0.66
USP54-214ENST00000492357 NT5C3AQ9H0P0 336 aa10.9□□□□□ -0.66
USP54-214ENST00000492357 TXNRD2Q9NNW7 524 aa10.9□□□□□ -0.66
USP54-214ENST00000492357 JADE2Q9NQC1 790 aa10.9□□□□□ -0.66
USP54-214ENST00000492357 COL20A1Q9P218 1284 aa10.9□□□□□ -0.66
USP54-214ENST00000492357 KCNH3Q9ULD8 1083 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms