RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 CALCOCO2Q13137 446 aa16.09■□□□□ 0.17
HDAC6-220ENST00000477528 NTRK3Q16288 839 aa16.09■□□□□ 0.17
HDAC6-220ENST00000477528 ARHGAP44Q17R89 818 aa16.09■□□□□ 0.17
HDAC6-220ENST00000477528 RDH13Q8NBN7 331 aa16.09■□□□□ 0.17
HDAC6-220ENST00000477528 CCDC77Q9BR77 488 aa16.09■□□□□ 0.17
HDAC6-220ENST00000477528 CCSER1Q9C0I3 900 aa16.09■□□□□ 0.17
HDAC6-220ENST00000477528 SYNCQ9H7C4 482 aa16.09■□□□□ 0.17
HDAC6-220ENST00000477528 CACNB1Q02641 598 aaPredicted RBP16.09■□□□□ 0.17
HDAC6-220ENST00000477528 CCDC50Q8IVM0 306 aa16.09■□□□□ 0.17
HDAC6-220ENST00000477528 GJA10Q969M2 543 aa16.09■□□□□ 0.17
HDAC6-220ENST00000477528 ADGRG1Q9Y653 693 aa16.09■□□□□ 0.17
HDAC6-220ENST00000477528 CRKP46108 304 aa16.09■□□□□ 0.17
HDAC6-220ENST00000477528 RIOK1Q9BRS2 568 aaKnown RBP16.09■□□□□ 0.17
HDAC6-220ENST00000477528 PNMA2Q9UL42 364 aa16.09■□□□□ 0.17
HDAC6-220ENST00000477528 SUGT1Q9Y2Z0 365 aa16.09■□□□□ 0.17
HDAC6-220ENST00000477528 MMP10P09238 476 aa16.08■□□□□ 0.17
HDAC6-220ENST00000477528 H2AFZP0C0S5 128 aa16.08■□□□□ 0.17
HDAC6-220ENST00000477528 PPP1R7Q15435 360 aa16.08■□□□□ 0.17
HDAC6-220ENST00000477528 SLC10A5Q5PT55 438 aa16.08■□□□□ 0.17
HDAC6-220ENST00000477528 H2AFVQ71UI9 128 aa16.08■□□□□ 0.17
HDAC6-220ENST00000477528 PODNQ7Z5L7 613 aa16.08■□□□□ 0.17
HDAC6-220ENST00000477528 AMFRQ9UKV5 643 aa16.08■□□□□ 0.17
HDAC6-220ENST00000477528 POTEMA6NI47 508 aa16.08■□□□□ 0.17
HDAC6-220ENST00000477528 AP5Z1O43299 807 aa16.08■□□□□ 0.17
HDAC6-220ENST00000477528 ALAS1P13196 640 aa16.08■□□□□ 0.17
HDAC6-220ENST00000477528 SP8Q8IXZ3 490 aa16.08■□□□□ 0.17
HDAC6-220ENST00000477528 SMCR8Q8TEV9 937 aaPredicted RBP16.08■□□□□ 0.17
HDAC6-220ENST00000477528 GDAP1L1Q96MZ0 367 aa16.08■□□□□ 0.17
HDAC6-220ENST00000477528 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.08■□□□□ 0.17
HDAC6-220ENST00000477528 NLRX1Q86UT6 975 aa16.08■□□□□ 0.16
HDAC6-220ENST00000477528 POTEDQ86YR6 584 aa16.08■□□□□ 0.16
HDAC6-220ENST00000477528 MED4Q9NPJ6 270 aa16.08■□□□□ 0.16
HDAC6-220ENST00000477528 N4BP1O75113 896 aaKnown RBP16.08■□□□□ 0.16
HDAC6-220ENST00000477528 AFPP02771 609 aaKnown RBP16.08■□□□□ 0.16
HDAC6-220ENST00000477528 STAT2P52630 851 aa16.08■□□□□ 0.16
HDAC6-220ENST00000477528 STRN3Q13033 797 aa16.08■□□□□ 0.16
HDAC6-220ENST00000477528 GJD4Q96KN9 370 aaPredicted RBP16.08■□□□□ 0.16
HDAC6-220ENST00000477528 WDR11Q9BZH6 1224 aa16.08■□□□□ 0.16
HDAC6-220ENST00000477528 TMEM260Q9NX78 707 aa16.08■□□□□ 0.16
HDAC6-220ENST00000477528 K7ENM7 598 aa16.07■□□□□ 0.16
HDAC6-220ENST00000477528 KCNK3O14649 394 aa16.07■□□□□ 0.16
HDAC6-220ENST00000477528 GJC1P36383 396 aa16.07■□□□□ 0.16
HDAC6-220ENST00000477528 EIF4A3P38919 411 aaKnown RBP16.07■□□□□ 0.16
HDAC6-220ENST00000477528 PRR5LQ6MZQ0 368 aa16.07■□□□□ 0.16
HDAC6-220ENST00000477528 PPP4R3CPQ6ZMV5 832 aa16.07■□□□□ 0.16
HDAC6-220ENST00000477528 RAD54LQ92698 747 aa16.07■□□□□ 0.16
HDAC6-220ENST00000477528 DNAJC5Q9H3Z4 198 aa16.07■□□□□ 0.16
HDAC6-220ENST00000477528 LIMA1Q9UHB6 759 aaKnown RBP16.07■□□□□ 0.16
HDAC6-220ENST00000477528 CCPG1Q9ULG6 757 aa16.07■□□□□ 0.16
HDAC6-220ENST00000477528 JCADQ9P266 1359 aa16.07■□□□□ 0.16
HDAC6-220ENST00000477528 AFF2P51816 1311 aa16.07■□□□□ 0.16
HDAC6-220ENST00000477528 CLRN2A0PK11 232 aa16.07■□□□□ 0.16
HDAC6-220ENST00000477528 LRP10Q7Z4F1 713 aa16.07■□□□□ 0.16
HDAC6-220ENST00000477528 FNBP4Q8N3X1 1017 aaPredicted RBP16.07■□□□□ 0.16
HDAC6-220ENST00000477528 VGLL2Q8N8G2 317 aa16.07■□□□□ 0.16
HDAC6-220ENST00000477528 JRKLQ9Y4A0 524 aa16.07■□□□□ 0.16
HDAC6-220ENST00000477528 GRIN1Q05586 938 aa16.07■□□□□ 0.16
HDAC6-220ENST00000477528 ODR4Q5SWX8 454 aa16.07■□□□□ 0.16
HDAC6-220ENST00000477528 KCNG1Q9UIX4 513 aa16.07■□□□□ 0.16
HDAC6-220ENST00000477528 UBE2Q2LH0YL09 131 aa16.07■□□□□ 0.16
HDAC6-220ENST00000477528 OTUD6AQ7L8S5 288 aa16.07■□□□□ 0.16
HDAC6-220ENST00000477528 TBC1D16Q8TBP0 767 aa16.07■□□□□ 0.16
HDAC6-220ENST00000477528 CEP83Q9Y592 693 aa16.07■□□□□ 0.16
HDAC6-220ENST00000477528 A0A1W2PQC6 194 aa16.06■□□□□ 0.16
HDAC6-220ENST00000477528 GSTA5Q7RTV2 222 aa16.06■□□□□ 0.16
HDAC6-220ENST00000477528 PROM2Q8N271 834 aa16.06■□□□□ 0.16
HDAC6-220ENST00000477528 FAM212AQ96EL1 285 aa16.06■□□□□ 0.16
HDAC6-220ENST00000477528 FLT1P17948 1338 aa16.06■□□□□ 0.16
HDAC6-220ENST00000477528 PDS5AQ29RF7 1337 aaKnown RBP16.06■□□□□ 0.16
HDAC6-220ENST00000477528 TLDC2A0PJX2 215 aa16.06■□□□□ 0.16
HDAC6-220ENST00000477528 ACTN2P35609 894 aa16.06■□□□□ 0.16
HDAC6-220ENST00000477528 KIF11P52732 1056 aa16.06■□□□□ 0.16
HDAC6-220ENST00000477528 CYP27A1Q02318 531 aa16.06■□□□□ 0.16
HDAC6-220ENST00000477528 NR1I3Q14994 352 aa16.06■□□□□ 0.16
HDAC6-220ENST00000477528 DAAM2Q86T65 1068 aa16.06■□□□□ 0.16
HDAC6-220ENST00000477528 CRAMP1Q96RY5 1269 aa16.06■□□□□ 0.16
HDAC6-220ENST00000477528 ZNF577Q9BSK1 485 aa16.06■□□□□ 0.16
HDAC6-220ENST00000477528 PRM3Q9NNZ6 103 aa16.06■□□□□ 0.16
HDAC6-220ENST00000477528 DDX41Q9UJV9 622 aaKnown RBP16.06■□□□□ 0.16
HDAC6-220ENST00000477528 MEIS1O00470 390 aa16.06■□□□□ 0.16
HDAC6-220ENST00000477528 SEC23AQ15436 765 aa16.06■□□□□ 0.16
HDAC6-220ENST00000477528 NSRP1Q9H0G5 558 aaKnown RBP16.06■□□□□ 0.16
HDAC6-220ENST00000477528 LTN1O94822 1766 aa16.06■□□□□ 0.16
HDAC6-220ENST00000477528 USP17L10C9JJH3 530 aa16.06■□□□□ 0.16
HDAC6-220ENST00000477528 PSMC2P35998 433 aaKnown RBP16.06■□□□□ 0.16
HDAC6-220ENST00000477528 NAA30Q147X3 362 aaPredicted RBP16.06■□□□□ 0.16
HDAC6-220ENST00000477528 ILDR1Q86SU0 546 aaPredicted RBP16.06■□□□□ 0.16
HDAC6-220ENST00000477528 FAM71BQ8TC56 605 aa16.06■□□□□ 0.16
HDAC6-220ENST00000477528 NACC1Q96RE7 527 aa16.06■□□□□ 0.16
HDAC6-220ENST00000477528 PDE11AQ9HCR9 933 aa16.06■□□□□ 0.16
HDAC6-220ENST00000477528 PCDHA13Q9Y5I0 950 aa16.06■□□□□ 0.16
HDAC6-220ENST00000477528 TNS2Q63HR2 1409 aa16.05■□□□□ 0.16
HDAC6-220ENST00000477528 AKR1B1P15121 316 aa16.05■□□□□ 0.16
HDAC6-220ENST00000477528 RUFY4Q6ZNE9 571 aa16.05■□□□□ 0.16
HDAC6-220ENST00000477528 FERP16591 822 aa16.05■□□□□ 0.16
HDAC6-220ENST00000477528 RASA1P20936 1047 aa16.05■□□□□ 0.16
HDAC6-220ENST00000477528 C16orf86Q6ZW13 317 aa16.05■□□□□ 0.16
HDAC6-220ENST00000477528 ADD3Q9UEY8 706 aaKnown RBP16.05■□□□□ 0.16
HDAC6-220ENST00000477528 SERPING1P05155 500 aa16.05■□□□□ 0.16
HDAC6-220ENST00000477528 NF2P35240 595 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms