RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 CDK5RAP2Q96SN8 1893 aa6.56□□□□□ -1.36
HMGB1-207ENST00000468384 CACNA1IQ9P0X4 2223 aa6.56□□□□□ -1.36
HMGB1-207ENST00000468384 A0A0U1RQG5 324 aaPredicted RBP6.56□□□□□ -1.36
HMGB1-207ENST00000468384 SLC35F4A4IF30 521 aa6.56□□□□□ -1.36
HMGB1-207ENST00000468384 H3BNC9 293 aa6.56□□□□□ -1.36
HMGB1-207ENST00000468384 EFCAB14O75071 495 aa6.56□□□□□ -1.36
HMGB1-207ENST00000468384 GPM6BQ13491 265 aa6.56□□□□□ -1.36
HMGB1-207ENST00000468384 KCNA10Q16322 511 aa6.56□□□□□ -1.36
HMGB1-207ENST00000468384 QPCTQ16769 361 aa6.56□□□□□ -1.36
HMGB1-207ENST00000468384 PROSER3Q2NL68 480 aa6.56□□□□□ -1.36
HMGB1-207ENST00000468384 CCSAPQ6IQ19 270 aaPredicted RBP6.56□□□□□ -1.36
HMGB1-207ENST00000468384 C1orf210Q8IVY1 113 aa6.56□□□□□ -1.36
HMGB1-207ENST00000468384 VTI1AQ96AJ9 217 aa6.56□□□□□ -1.36
HMGB1-207ENST00000468384 IGFLR1Q9H665 355 aa6.56□□□□□ -1.36
HMGB1-207ENST00000468384 CLEC1BQ9P126 229 aa6.56□□□□□ -1.36
HMGB1-207ENST00000468384 PAX4O43316 350 aa6.55□□□□□ -1.36
HMGB1-207ENST00000468384 TBC1D4O60343 1298 aa6.55□□□□□ -1.36
HMGB1-207ENST00000468384 LRP3O75074 770 aa6.55□□□□□ -1.36
HMGB1-207ENST00000468384 KCNJ6P48051 423 aa6.55□□□□□ -1.36
HMGB1-207ENST00000468384 LIMK1P53667 647 aa6.55□□□□□ -1.36
HMGB1-207ENST00000468384 HERVK_113P62684 666 aa6.55□□□□□ -1.36
HMGB1-207ENST00000468384 IRX3P78415 501 aaPredicted RBP6.55□□□□□ -1.36
HMGB1-207ENST00000468384 GRB14Q14449 540 aa6.55□□□□□ -1.36
HMGB1-207ENST00000468384 EPC2Q52LR7 807 aa6.55□□□□□ -1.36
HMGB1-207ENST00000468384 FKBP1CQ5VVH2 108 aa6.55□□□□□ -1.36
HMGB1-207ENST00000468384 ATRIPQ8WXE1 791 aa6.55□□□□□ -1.36
HMGB1-207ENST00000468384 GLMNQ92990 594 aa6.55□□□□□ -1.36
HMGB1-207ENST00000468384 FAM89AQ96GI7 184 aa6.55□□□□□ -1.36
HMGB1-207ENST00000468384 CALR3Q96L12 384 aaKnown RBP6.55□□□□□ -1.36
HMGB1-207ENST00000468384 CRBNQ96SW2 442 aa6.55□□□□□ -1.36
HMGB1-207ENST00000468384 SEMA4GQ9NTN9 838 aa6.55□□□□□ -1.36
HMGB1-207ENST00000468384 TTF2Q9UNY4 1162 aaKnown RBP6.55□□□□□ -1.36
HMGB1-207ENST00000468384 IRS4O14654 1257 aaPredicted RBP6.54□□□□□ -1.36
HMGB1-207ENST00000468384 LILRB3O75022 631 aa6.54□□□□□ -1.36
HMGB1-207ENST00000468384 NDUFV2P19404 249 aa6.54□□□□□ -1.36
HMGB1-207ENST00000468384 SP100P23497 879 aaPredicted RBP6.54□□□□□ -1.36
HMGB1-207ENST00000468384 CRKP46108 304 aa6.54□□□□□ -1.36
HMGB1-207ENST00000468384 SH3BP2P78314 561 aa6.54□□□□□ -1.36
HMGB1-207ENST00000468384 CSRP2Q16527 193 aa6.54□□□□□ -1.36
HMGB1-207ENST00000468384 HSP90AB3PQ58FF7 597 aa6.54□□□□□ -1.36
HMGB1-207ENST00000468384 RTL5Q5HYW3 569 aaPredicted RBP6.54□□□□□ -1.36
HMGB1-207ENST00000468384 WDR78Q5VTH9 848 aa6.54□□□□□ -1.36
HMGB1-207ENST00000468384 CCDC84Q86UT8 332 aaPredicted RBP6.54□□□□□ -1.36
HMGB1-207ENST00000468384 MAML2Q8IZL2 1156 aaPredicted RBP6.54□□□□□ -1.36
HMGB1-207ENST00000468384 KLHDC9Q8NEP7 349 aa6.54□□□□□ -1.36
HMGB1-207ENST00000468384 NEK1Q96PY6 1258 aa6.54□□□□□ -1.36
HMGB1-207ENST00000468384 PAGR1Q9BTK6 254 aa6.54□□□□□ -1.36
HMGB1-207ENST00000468384 SUV39H2Q9H5I1 410 aa6.54□□□□□ -1.36
HMGB1-207ENST00000468384 ERVK-5Q9HDB9 667 aa6.54□□□□□ -1.36
HMGB1-207ENST00000468384 TMOD2Q9NZR1 351 aa6.54□□□□□ -1.36
HMGB1-207ENST00000468384 ANKMY1Q9P2S6 941 aa6.54□□□□□ -1.36
HMGB1-207ENST00000468384 DBF4Q9UBU7 674 aaPredicted RBP6.54□□□□□ -1.36
HMGB1-207ENST00000468384 NEUROG3Q9Y4Z2 214 aa6.54□□□□□ -1.36
HMGB1-207ENST00000468384 PCDHB15Q9Y5E8 787 aa6.54□□□□□ -1.36
HMGB1-207ENST00000468384 PCDHGA2Q9Y5H1 932 aa6.54□□□□□ -1.36
HMGB1-207ENST00000468384 F8P00451 2351 aa6.54□□□□□ -1.36
HMGB1-207ENST00000468384 MYO10Q9HD67 2058 aa6.54□□□□□ -1.36
HMGB1-207ENST00000468384 COL6A6A6NMZ7 2263 aa6.53□□□□□ -1.36
HMGB1-207ENST00000468384 CAPN8A6NHC0 703 aa6.53□□□□□ -1.36
HMGB1-207ENST00000468384 DDX11L8A8MPP1 907 aa6.53□□□□□ -1.36
HMGB1-207ENST00000468384 GNAT3A8MTJ3 354 aa6.53□□□□□ -1.36
HMGB1-207ENST00000468384 PER1O15534 1290 aaPredicted RBP6.53□□□□□ -1.36
HMGB1-207ENST00000468384 AP1G2O75843 785 aa6.53□□□□□ -1.36
HMGB1-207ENST00000468384 BAIAP3O94812 1187 aa6.53□□□□□ -1.36
HMGB1-207ENST00000468384 GJB5O95377 273 aa6.53□□□□□ -1.36
HMGB1-207ENST00000468384 HMGCS2P54868 508 aa6.53□□□□□ -1.36
HMGB1-207ENST00000468384 TBC1D8BQ0IIM8 1120 aa6.53□□□□□ -1.36
HMGB1-207ENST00000468384 ZNF252P-AS1Q0IIN9 211 aa6.53□□□□□ -1.36
HMGB1-207ENST00000468384 ZNF528Q3MIS6 628 aa6.53□□□□□ -1.36
HMGB1-207ENST00000468384 SNRNP48Q6IEG0 339 aaKnown RBP6.53□□□□□ -1.36
HMGB1-207ENST00000468384 DPP9Q86TI2 863 aa6.53□□□□□ -1.36
HMGB1-207ENST00000468384 ANKRD18AQ8IVF6 992 aa6.53□□□□□ -1.36
HMGB1-207ENST00000468384 WWC1Q8IX03 1113 aa6.53□□□□□ -1.36
HMGB1-207ENST00000468384 LSM14AQ8ND56 463 aaKnown RBP6.53□□□□□ -1.36
HMGB1-207ENST00000468384 CCER1Q8TC90 406 aaPredicted RBP6.53□□□□□ -1.36
HMGB1-207ENST00000468384 SUSD6Q92537 303 aa6.53□□□□□ -1.36
HMGB1-207ENST00000468384 ACDQ96AP0 544 aa6.53□□□□□ -1.36
HMGB1-207ENST00000468384 LENG1Q96BZ8 264 aaPredicted RBP6.53□□□□□ -1.36
HMGB1-207ENST00000468384 MINPP1Q9UNW1 487 aa6.53□□□□□ -1.36
HMGB1-207ENST00000468384 LEMD3Q9Y2U8 911 aa6.53□□□□□ -1.36
HMGB1-207ENST00000468384 MSRB2Q9Y3D2 182 aa6.53□□□□□ -1.36
HMGB1-207ENST00000468384 ATRQ13535 2644 aa6.52□□□□□ -1.37
HMGB1-207ENST00000468384 SMCHD1A6NHR9 2005 aa6.52□□□□□ -1.37
HMGB1-207ENST00000468384 WDR5P61964 334 aaKnown RBP6.52□□□□□ -1.37
HMGB1-207ENST00000468384 SPP2Q13103 211 aa6.52□□□□□ -1.37
HMGB1-207ENST00000468384 SIX5Q8N196 739 aa6.52□□□□□ -1.37
HMGB1-207ENST00000468384 SAMD11Q96NU1 681 aa6.52□□□□□ -1.37
HMGB1-207ENST00000468384 MKNK1Q9BUB5 465 aa6.52□□□□□ -1.37
HMGB1-207ENST00000468384 CARD14Q9BXL6 1004 aa6.52□□□□□ -1.37
HMGB1-207ENST00000468384 FTOQ9C0B1 505 aaKnown RBP eCLIP6.52□□□□□ -1.37
HMGB1-207ENST00000468384 TRPV6Q9H1D0 765 aa6.52□□□□□ -1.37
HMGB1-207ENST00000468384 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.52□□□□□ -1.37
HMGB1-207ENST00000468384 IVNS1ABPQ9Y6Y0 642 aa6.52□□□□□ -1.37
HMGB1-207ENST00000468384 FN1P02751 2386 aaKnown RBP6.52□□□□□ -1.37
HMGB1-207ENST00000468384 SYNRGQ9UMZ2 1314 aa6.51□□□□□ -1.37
HMGB1-207ENST00000468384 FAM221BA6H8Z2 402 aa6.51□□□□□ -1.37
HMGB1-207ENST00000468384 GIPC1O14908 333 aa6.51□□□□□ -1.37
HMGB1-207ENST00000468384 HYAL3O43820 417 aaPredicted RBP6.51□□□□□ -1.37
HMGB1-207ENST00000468384 FOXD2O60548 495 aaPredicted RBP6.51□□□□□ -1.37
HMGB1-207ENST00000468384 LILRB5O75023 590 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms