RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 POLR3EQ9NVU0 708 aa11.45□□□□□ -0.58
CD44-207ENST00000425428 CASP8AP2Q9UKL3 1982 aa11.45□□□□□ -0.58
CD44-207ENST00000425428 DNAJC25-GNG10A0A024R161 153 aa11.44□□□□□ -0.58
CD44-207ENST00000425428 XRCC5P13010 732 aaKnown RBP11.44□□□□□ -0.58
CD44-207ENST00000425428 CYP2B6P20813 491 aa11.44□□□□□ -0.58
CD44-207ENST00000425428 PTMSP20962 102 aa11.44□□□□□ -0.58
CD44-207ENST00000425428 ZNF174Q15697 407 aa11.44□□□□□ -0.58
CD44-207ENST00000425428 CALCRLQ16602 461 aa11.44□□□□□ -0.58
CD44-207ENST00000425428 ZNF792Q3KQV3 632 aa11.44□□□□□ -0.58
CD44-207ENST00000425428 PRR16Q569H4 304 aa11.44□□□□□ -0.58
CD44-207ENST00000425428 MORN1Q5T089 497 aa11.44□□□□□ -0.58
CD44-207ENST00000425428 NIPA1Q7RTP0 329 aa11.44□□□□□ -0.58
CD44-207ENST00000425428 PLA2G4DQ86XP0 818 aa11.44□□□□□ -0.58
CD44-207ENST00000425428 DNAJC5GQ8N7S2 189 aa11.44□□□□□ -0.58
CD44-207ENST00000425428 ZNF296Q8WUU4 475 aaPredicted RBP11.44□□□□□ -0.58
CD44-207ENST00000425428 TNPO1Q92973 898 aaKnown RBP11.44□□□□□ -0.58
CD44-207ENST00000425428 SHISA4Q96DD7 197 aa11.44□□□□□ -0.58
CD44-207ENST00000425428 MXRA8Q9BRK3 442 aa11.44□□□□□ -0.58
CD44-207ENST00000425428 FRMPD4Q14CM0 1322 aa11.44□□□□□ -0.58
CD44-207ENST00000425428 RPTORQ8N122 1335 aa11.44□□□□□ -0.58
CD44-207ENST00000425428 SYNGAP1Q96PV0 1343 aa11.44□□□□□ -0.58
CD44-207ENST00000425428 YEATS4O95619 227 aa11.44□□□□□ -0.58
CD44-207ENST00000425428 HOXC6P09630 235 aa11.44□□□□□ -0.58
CD44-207ENST00000425428 CTCFP49711 727 aaPredicted RBP11.44□□□□□ -0.58
CD44-207ENST00000425428 DNM1Q05193 864 aaKnown RBP11.44□□□□□ -0.58
CD44-207ENST00000425428 MTMR1Q13613 665 aa11.44□□□□□ -0.58
CD44-207ENST00000425428 OLFML2BQ68BL8 750 aa11.44□□□□□ -0.58
CD44-207ENST00000425428 VSIG10LQ86VR7 867 aa11.44□□□□□ -0.58
CD44-207ENST00000425428 GPRASP2Q96D09 838 aa11.44□□□□□ -0.58
CD44-207ENST00000425428 MAML3Q96JK9 1138 aa11.44□□□□□ -0.58
CD44-207ENST00000425428 TRIM47Q96LD4 638 aa11.44□□□□□ -0.58
CD44-207ENST00000425428 SDF4Q9BRK5 362 aa11.44□□□□□ -0.58
CD44-207ENST00000425428 R3HDMLQ9H3Y0 253 aa11.44□□□□□ -0.58
CD44-207ENST00000425428 RTEL1Q9NZ71 1219 aa11.44□□□□□ -0.58
CD44-207ENST00000425428 COL20A1Q9P218 1284 aa11.44□□□□□ -0.58
CD44-207ENST00000425428 TFIP11Q9UBB9 837 aaKnown RBP11.44□□□□□ -0.58
CD44-207ENST00000425428 SRRDQ9UH36 339 aa11.44□□□□□ -0.58
CD44-207ENST00000425428 ZDHHC9Q9Y397 364 aa11.44□□□□□ -0.58
CD44-207ENST00000425428 STK24Q9Y6E0 443 aa11.44□□□□□ -0.58
CD44-207ENST00000425428 KIAA1217Q5T5P2 1943 aa11.43□□□□□ -0.58
CD44-207ENST00000425428 CYP3A7-CYP3A51PA0A087WV96 503 aa11.43□□□□□ -0.58
CD44-207ENST00000425428 TBX3O15119 743 aa11.43□□□□□ -0.58
CD44-207ENST00000425428 FIBPO43427 364 aa11.43□□□□□ -0.58
CD44-207ENST00000425428 TGFB3P10600 412 aa11.43□□□□□ -0.58
CD44-207ENST00000425428 CYP3A7P24462 503 aa11.43□□□□□ -0.58
CD44-207ENST00000425428 CIITAP33076 1130 aa11.43□□□□□ -0.58
CD44-207ENST00000425428 TXLNAP40222 546 aa11.43□□□□□ -0.58
CD44-207ENST00000425428 ME1P48163 572 aa11.43□□□□□ -0.58
CD44-207ENST00000425428 FLT3LGP49771 235 aa11.43□□□□□ -0.58
CD44-207ENST00000425428 TTLL4Q14679 1199 aa11.43□□□□□ -0.58
CD44-207ENST00000425428 Q4G0T1 1027 aa11.43□□□□□ -0.58
CD44-207ENST00000425428 ARL6IP4Q66PJ3 421 aaKnown RBP11.43□□□□□ -0.58
CD44-207ENST00000425428 DTHD1Q6ZMT9 781 aa11.43□□□□□ -0.58
CD44-207ENST00000425428 ARMCX2Q7L311 632 aa11.43□□□□□ -0.58
CD44-207ENST00000425428 FERMT2Q96AC1 680 aa11.43□□□□□ -0.58
CD44-207ENST00000425428 FAM20AQ96MK3 541 aa11.43□□□□□ -0.58
CD44-207ENST00000425428 TINF2Q9BSI4 451 aa11.43□□□□□ -0.58
CD44-207ENST00000425428 ABHD16BQ9H3Z7 469 aa11.43□□□□□ -0.58
CD44-207ENST00000425428 VTA1Q9NP79 307 aa11.43□□□□□ -0.58
CD44-207ENST00000425428 MRVI1Q9Y6F6 885 aa11.43□□□□□ -0.58
CD44-207ENST00000425428 MCM3APO60318 1980 aa11.43□□□□□ -0.58
CD44-207ENST00000425428 SOWAHBA6NEL2 793 aa11.42□□□□□ -0.58
CD44-207ENST00000425428 SPTLC2O15270 562 aa11.42□□□□□ -0.58
CD44-207ENST00000425428 COBLO75128 1261 aa11.42□□□□□ -0.58
CD44-207ENST00000425428 OR52Z1P0C646 297 aa11.42□□□□□ -0.58
CD44-207ENST00000425428 PTGDRQ13258 359 aa11.42□□□□□ -0.58
CD44-207ENST00000425428 FAM173BQ6P4H8 233 aa11.42□□□□□ -0.58
CD44-207ENST00000425428 SEPT14Q6ZU15 432 aa11.42□□□□□ -0.58
CD44-207ENST00000425428 SCFD2Q8WU76 684 aa11.42□□□□□ -0.58
CD44-207ENST00000425428 ZNF577Q9BSK1 485 aa11.42□□□□□ -0.58
CD44-207ENST00000425428 JADE2Q9NQC1 790 aa11.42□□□□□ -0.58
CD44-207ENST00000425428 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.42□□□□□ -0.58
CD44-207ENST00000425428 TBC1D22BQ9NU19 505 aa11.42□□□□□ -0.58
CD44-207ENST00000425428 TSKSQ9UJT2 592 aa11.42□□□□□ -0.58
CD44-207ENST00000425428 TRIM17Q9Y577 477 aa11.42□□□□□ -0.58
CD44-207ENST00000425428 PCDHB6Q9Y5E3 794 aa11.42□□□□□ -0.58
CD44-207ENST00000425428 FAM205CA6NFA0 338 aa11.41□□□□□ -0.58
CD44-207ENST00000425428 GAS7O60861 476 aa11.41□□□□□ -0.58
CD44-207ENST00000425428 PPP6R2O75170 966 aa11.41□□□□□ -0.58
CD44-207ENST00000425428 PRPHP41219 470 aa11.41□□□□□ -0.58
CD44-207ENST00000425428 NASPP49321 788 aaPredicted RBP11.41□□□□□ -0.58
CD44-207ENST00000425428 IRF5Q13568 498 aa11.41□□□□□ -0.58
CD44-207ENST00000425428 NEDD9Q14511 834 aa11.41□□□□□ -0.58
CD44-207ENST00000425428 SLC39A14Q15043 492 aa11.41□□□□□ -0.58
CD44-207ENST00000425428 EARS2Q5JPH6 523 aaKnown RBP11.41□□□□□ -0.58
CD44-207ENST00000425428 MAMDC4Q6UXC1 1216 aa11.41□□□□□ -0.58
CD44-207ENST00000425428 KRI1Q8N9T8 703 aaKnown RBP11.41□□□□□ -0.58
CD44-207ENST00000425428 RASSF8Q8NHQ8 419 aa11.41□□□□□ -0.58
CD44-207ENST00000425428 ERMNQ8TAM6 284 aa11.41□□□□□ -0.58
CD44-207ENST00000425428 USP28Q96RU2 1077 aa11.41□□□□□ -0.58
CD44-207ENST00000425428 TEKT3Q9BXF9 490 aa11.41□□□□□ -0.58
CD44-207ENST00000425428 WDR11Q9BZH6 1224 aa11.41□□□□□ -0.58
CD44-207ENST00000425428 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.41□□□□□ -0.58
CD44-207ENST00000425428 NRBP1Q9UHY1 535 aa11.41□□□□□ -0.58
CD44-207ENST00000425428 PCDHA12Q9UN75 941 aa11.41□□□□□ -0.58
CD44-207ENST00000425428 MEIS1O00470 390 aa11.41□□□□□ -0.58
CD44-207ENST00000425428 ADCY3O60266 1144 aa11.41□□□□□ -0.58
CD44-207ENST00000425428 TDP2O95551 362 aa11.41□□□□□ -0.58
CD44-207ENST00000425428 TXKP42681 527 aa11.41□□□□□ -0.58
CD44-207ENST00000425428 TOB1P50616 345 aaPredicted RBP11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms