RNA–Protein interactions for RNA: ENST00000416159.5

PDLIM2-208, Transcript of PDZ and LIM domain 2, humanhuman

TSL 5

Gene PDLIM2, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-208ENST00000416159 KIF5BP33176 963 aa20.37■□□□□ 0.85
PDLIM2-208ENST00000416159 MCM5P33992 734 aa20.37■□□□□ 0.85
PDLIM2-208ENST00000416159 LAMC2Q13753 1193 aa20.37■□□□□ 0.85
PDLIM2-208ENST00000416159 CENPQQ7L2Z9 268 aaPredicted RBP20.37■□□□□ 0.85
PDLIM2-208ENST00000416159 VSIG10LQ86VR7 867 aa20.37■□□□□ 0.85
PDLIM2-208ENST00000416159 ZNF654Q8IZM8 581 aa20.37■□□□□ 0.85
PDLIM2-208ENST00000416159 CTCFLQ8NI51 663 aaPredicted RBP20.37■□□□□ 0.85
PDLIM2-208ENST00000416159 EMID1Q96A84 441 aaPredicted RBP20.37■□□□□ 0.85
PDLIM2-208ENST00000416159 TMEM87BQ96K49 555 aa20.37■□□□□ 0.85
PDLIM2-208ENST00000416159 LY9Q9HBG7 655 aa20.37■□□□□ 0.85
PDLIM2-208ENST00000416159 MRVI1Q9Y6F6 885 aa20.37■□□□□ 0.85
PDLIM2-208ENST00000416159 SLC27A2O14975 620 aa20.36■□□□□ 0.85
PDLIM2-208ENST00000416159 PRC1O43663 620 aa20.36■□□□□ 0.85
PDLIM2-208ENST00000416159 PFKMP08237 780 aa20.36■□□□□ 0.85
PDLIM2-208ENST00000416159 SMARCA1P28370 1054 aa20.36■□□□□ 0.85
PDLIM2-208ENST00000416159 PGM5Q15124 567 aa20.36■□□□□ 0.85
PDLIM2-208ENST00000416159 DGKDQ16760 1214 aa20.36■□□□□ 0.85
PDLIM2-208ENST00000416159 BMP2KLQ5H9B9 411 aa20.36■□□□□ 0.85
PDLIM2-208ENST00000416159 MYLIPQ8WY64 445 aa20.36■□□□□ 0.85
PDLIM2-208ENST00000416159 TIFAQ96CG3 184 aa20.36■□□□□ 0.85
PDLIM2-208ENST00000416159 SCLYQ96I15 445 aa20.36■□□□□ 0.85
PDLIM2-208ENST00000416159 LZTS2Q9BRK4 669 aa20.36■□□□□ 0.85
PDLIM2-208ENST00000416159 GRXCR1A8MXD5 290 aa20.35■□□□□ 0.85
PDLIM2-208ENST00000416159 GNAQP50148 359 aa20.35■□□□□ 0.85
PDLIM2-208ENST00000416159 NECTIN1Q15223 517 aa20.35■□□□□ 0.85
PDLIM2-208ENST00000416159 CREB3L3Q68CJ9 461 aa20.35■□□□□ 0.85
PDLIM2-208ENST00000416159 NFXL1Q6ZNB6 911 aa20.35■□□□□ 0.85
PDLIM2-208ENST00000416159 OTOP2Q7RTS6 562 aa20.35■□□□□ 0.85
PDLIM2-208ENST00000416159 DHX37Q8IY37 1157 aaKnown RBP20.35■□□□□ 0.85
PDLIM2-208ENST00000416159 RETREG2Q8NC44 543 aa20.35■□□□□ 0.85
PDLIM2-208ENST00000416159 SPZ1Q9BXG8 430 aa20.35■□□□□ 0.85
PDLIM2-208ENST00000416159 PBX4Q9BYU1 374 aa20.35■□□□□ 0.85
PDLIM2-208ENST00000416159 ZNF576Q9H609 170 aa20.35■□□□□ 0.85
PDLIM2-208ENST00000416159 NOD1Q9Y239 953 aa20.35■□□□□ 0.85
PDLIM2-208ENST00000416159 MYH7BA7E2Y1 1941 aa20.35■□□□□ 0.85
PDLIM2-208ENST00000416159 CCDC69A6NI79 296 aa20.34■□□□□ 0.85
PDLIM2-208ENST00000416159 RGS20O76081 388 aa20.34■□□□□ 0.85
PDLIM2-208ENST00000416159 TGFB3P10600 412 aa20.34■□□□□ 0.85
PDLIM2-208ENST00000416159 CCND2P30279 289 aa20.34■□□□□ 0.85
PDLIM2-208ENST00000416159 CHMP4BP1P59074 171 aa20.34■□□□□ 0.85
PDLIM2-208ENST00000416159 BFSP2Q13515 415 aa20.34■□□□□ 0.85
PDLIM2-208ENST00000416159 RAB30Q15771 203 aa20.34■□□□□ 0.85
PDLIM2-208ENST00000416159 SESTD1Q86VW0 696 aa20.34■□□□□ 0.85
PDLIM2-208ENST00000416159 FCHSD1Q86WN1 690 aa20.34■□□□□ 0.85
PDLIM2-208ENST00000416159 PPTC7Q8NI37 304 aa20.34■□□□□ 0.85
PDLIM2-208ENST00000416159 PPP1R13LQ8WUF5 828 aa20.34■□□□□ 0.85
PDLIM2-208ENST00000416159 KAT2BQ92831 832 aa20.34■□□□□ 0.85
PDLIM2-208ENST00000416159 RRP36Q96EU6 259 aaKnown RBP20.34■□□□□ 0.85
PDLIM2-208ENST00000416159 ANO2Q9NQ90 1003 aa20.34■□□□□ 0.85
PDLIM2-208ENST00000416159 CXXC1Q9P0U4 656 aaPredicted RBP20.34■□□□□ 0.85
PDLIM2-208ENST00000416159 MSRAQ9UJ68 235 aa20.34■□□□□ 0.85
PDLIM2-208ENST00000416159 PITPNM1O00562 1244 aa20.33■□□□□ 0.85
PDLIM2-208ENST00000416159 SH2B2O14492 632 aaPredicted RBP20.33■□□□□ 0.85
PDLIM2-208ENST00000416159 RFC2P35250 354 aa20.33■□□□□ 0.85
PDLIM2-208ENST00000416159 LIFRP42702 1097 aa20.33■□□□□ 0.85
PDLIM2-208ENST00000416159 PTGISQ16647 500 aa20.33■□□□□ 0.85
PDLIM2-208ENST00000416159 PIBF1Q8WXW3 757 aa20.33■□□□□ 0.85
PDLIM2-208ENST00000416159 MYL10Q9BUA6 226 aa20.33■□□□□ 0.85
PDLIM2-208ENST00000416159 KATNAL1Q9BW62 490 aa20.33■□□□□ 0.85
PDLIM2-208ENST00000416159 MYO9BQ13459 2157 aa20.33■□□□□ 0.85
PDLIM2-208ENST00000416159 COL6A3P12111 3177 aa20.33■□□□□ 0.84
PDLIM2-208ENST00000416159 CALM1P0DP23 149 aa20.32■□□□□ 0.84
PDLIM2-208ENST00000416159 CALM2P0DP24 149 aa20.32■□□□□ 0.84
PDLIM2-208ENST00000416159 CALM3P0DP25 149 aa20.32■□□□□ 0.84
PDLIM2-208ENST00000416159 FOSL2P15408 326 aa20.32■□□□□ 0.84
PDLIM2-208ENST00000416159 PBX2P40425 430 aa20.32■□□□□ 0.84
PDLIM2-208ENST00000416159 GRIN2CQ14957 1233 aa20.32■□□□□ 0.84
PDLIM2-208ENST00000416159 RNF20Q5VTR2 975 aa20.32■□□□□ 0.84
PDLIM2-208ENST00000416159 CCDC155Q8N6L0 562 aa20.32■□□□□ 0.84
PDLIM2-208ENST00000416159 MAFAQ8NHW3 353 aaPredicted RBP20.32■□□□□ 0.84
PDLIM2-208ENST00000416159 IL31RAQ8NI17 732 aa20.32■□□□□ 0.84
PDLIM2-208ENST00000416159 VWCEQ96DN2 955 aa20.32■□□□□ 0.84
PDLIM2-208ENST00000416159 SEC63Q9UGP8 760 aaKnown RBP20.32■□□□□ 0.84
PDLIM2-208ENST00000416159 SLC4A7Q9Y6M7 1214 aa20.32■□□□□ 0.84
PDLIM2-208ENST00000416159 LAMA2P24043 3122 aaKnown RBP20.31■□□□□ 0.84
PDLIM2-208ENST00000416159 DLL1O00548 723 aa20.31■□□□□ 0.84
PDLIM2-208ENST00000416159 PPFIA4O75335 1185 aa20.31■□□□□ 0.84
PDLIM2-208ENST00000416159 STAM2O75886 525 aa20.31■□□□□ 0.84
PDLIM2-208ENST00000416159 PSEN2P49810 448 aa20.31■□□□□ 0.84
PDLIM2-208ENST00000416159 CELF3Q5SZQ8 465 aaKnown RBP20.31■□□□□ 0.84
PDLIM2-208ENST00000416159 MYSM1Q5VVJ2 828 aa20.31■□□□□ 0.84
PDLIM2-208ENST00000416159 DEFB128Q7Z7B8 93 aa20.31■□□□□ 0.84
PDLIM2-208ENST00000416159 CAGE1Q8TC20 777 aa20.31■□□□□ 0.84
PDLIM2-208ENST00000416159 CUL5Q93034 780 aa20.31■□□□□ 0.84
PDLIM2-208ENST00000416159 SPATA33Q96N06 139 aa20.31■□□□□ 0.84
PDLIM2-208ENST00000416159 TRIP12Q14669 1992 aaPredicted RBP20.3■□□□□ 0.84
PDLIM2-208ENST00000416159 ZBBXA8MT70 800 aa20.3■□□□□ 0.84
PDLIM2-208ENST00000416159 GGPS1O95749 300 aa20.3■□□□□ 0.84
PDLIM2-208ENST00000416159 IQCF3P0C7M6 154 aa20.3■□□□□ 0.84
PDLIM2-208ENST00000416159 ACTN1P12814 892 aa20.3■□□□□ 0.84
PDLIM2-208ENST00000416159 HOXD8P13378 290 aaPredicted RBP20.3■□□□□ 0.84
PDLIM2-208ENST00000416159 GNPTABQ3T906 1256 aa20.3■□□□□ 0.84
PDLIM2-208ENST00000416159 GDF6Q6KF10 455 aaPredicted RBP20.3■□□□□ 0.84
PDLIM2-208ENST00000416159 C7orf31Q8N865 590 aa20.3■□□□□ 0.84
PDLIM2-208ENST00000416159 SMARCC2Q8TAQ2 1214 aa20.3■□□□□ 0.84
PDLIM2-208ENST00000416159 ALG1Q9BT22 464 aa20.3■□□□□ 0.84
PDLIM2-208ENST00000416159 HDAC6Q9UBN7 1215 aa20.3■□□□□ 0.84
PDLIM2-208ENST00000416159 SLC12A7Q9Y666 1083 aa20.3■□□□□ 0.84
PDLIM2-208ENST00000416159 FRMPD4Q14CM0 1322 aa20.29■□□□□ 0.84
PDLIM2-208ENST00000416159 HAS3O00219 553 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms