RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 ZNFX1Q9P2E3 1918 aaKnown RBP25.26■■□□□ 1.64
SDC3-202ENST00000339394 EIF3JO75822 258 aaKnown RBP25.26■■□□□ 1.63
SDC3-202ENST00000339394 EEPD1Q7L9B9 569 aa25.26■■□□□ 1.63
SDC3-202ENST00000339394 SLAIN1Q8ND83 568 aa25.26■■□□□ 1.63
SDC3-202ENST00000339394 ZSCAN22P10073 491 aaPredicted RBP25.25■■□□□ 1.63
SDC3-202ENST00000339394 GRK4P32298 578 aa25.25■■□□□ 1.63
SDC3-202ENST00000339394 FOXD4L5Q5VV16 416 aaPredicted RBP25.25■■□□□ 1.63
SDC3-202ENST00000339394 MFSD14CQ5VZR4 134 aa25.25■■□□□ 1.63
SDC3-202ENST00000339394 NEK8Q86SG6 692 aa25.25■■□□□ 1.63
SDC3-202ENST00000339394 FOXD4L4Q8WXT5 416 aaPredicted RBP25.25■■□□□ 1.63
SDC3-202ENST00000339394 BRD1O95696 1058 aa25.24■■□□□ 1.63
SDC3-202ENST00000339394 HMGCRP04035 888 aa25.24■■□□□ 1.63
SDC3-202ENST00000339394 TRIM32Q13049 653 aa25.24■■□□□ 1.63
SDC3-202ENST00000339394 RESTQ13127 1097 aa25.24■■□□□ 1.63
SDC3-202ENST00000339394 PKN2Q16513 984 aaKnown RBP25.24■■□□□ 1.63
SDC3-202ENST00000339394 LETM2Q2VYF4 491 aa25.24■■□□□ 1.63
SDC3-202ENST00000339394 PRAMEF19Q5SWL8 479 aa25.24■■□□□ 1.63
SDC3-202ENST00000339394 BRAPQ7Z569 592 aa25.24■■□□□ 1.63
SDC3-202ENST00000339394 FBXO16Q8IX29 292 aaPredicted RBP25.24■■□□□ 1.63
SDC3-202ENST00000339394 CYP2W1Q8TAV3 490 aa25.24■■□□□ 1.63
SDC3-202ENST00000339394 KATNBL1Q9H079 304 aa25.24■■□□□ 1.63
SDC3-202ENST00000339394 ABHD16BQ9H3Z7 469 aa25.24■■□□□ 1.63
SDC3-202ENST00000339394 CNPY2Q9Y2B0 182 aa25.24■■□□□ 1.63
SDC3-202ENST00000339394 ZDHHC9Q9Y397 364 aa25.24■■□□□ 1.63
SDC3-202ENST00000339394 FAM86B1E9PN63 330 aa25.23■■□□□ 1.63
SDC3-202ENST00000339394 STAM2O75886 525 aa25.23■■□□□ 1.63
SDC3-202ENST00000339394 RGS20O76081 388 aa25.23■■□□□ 1.63
SDC3-202ENST00000339394 FAM86B2P0C5J1 330 aa25.23■■□□□ 1.63
SDC3-202ENST00000339394 ITGB5P18084 799 aa25.23■■□□□ 1.63
SDC3-202ENST00000339394 CIITAP33076 1130 aa25.23■■□□□ 1.63
SDC3-202ENST00000339394 ZNF76P36508 570 aa25.23■■□□□ 1.63
SDC3-202ENST00000339394 ACVR2BQ13705 512 aa25.23■■□□□ 1.63
SDC3-202ENST00000339394 CEP55Q53EZ4 464 aa25.23■■□□□ 1.63
SDC3-202ENST00000339394 ZSCAN16Q9H4T2 348 aaPredicted RBP25.23■■□□□ 1.63
SDC3-202ENST00000339394 FBXO46Q6PJ61 603 aaPredicted RBP25.22■■□□□ 1.63
SDC3-202ENST00000339394 INPP4AQ96PE3 977 aaPredicted RBP25.22■■□□□ 1.63
SDC3-202ENST00000339394 UBIAD1Q9Y5Z9 338 aa25.22■■□□□ 1.63
SDC3-202ENST00000339394 WNT7AO00755 349 aa25.22■■□□□ 1.63
SDC3-202ENST00000339394 F13A1P00488 732 aa25.22■■□□□ 1.63
SDC3-202ENST00000339394 ATP2B1P20020 1258 aa25.22■■□□□ 1.63
SDC3-202ENST00000339394 TOB1P50616 345 aaPredicted RBP25.22■■□□□ 1.63
SDC3-202ENST00000339394 CACNB2Q08289 660 aaPredicted RBP25.22■■□□□ 1.63
SDC3-202ENST00000339394 SH3TC2Q8TF17 1288 aa25.22■■□□□ 1.63
SDC3-202ENST00000339394 MXRA8Q9BRK3 442 aa25.22■■□□□ 1.63
SDC3-202ENST00000339394 VTA1Q9NP79 307 aa25.22■■□□□ 1.63
SDC3-202ENST00000339394 BRCA2P51587 3418 aa25.21■■□□□ 1.63
SDC3-202ENST00000339394 CYP3A7-CYP3A51PA0A087WV96 503 aa25.21■■□□□ 1.63
SDC3-202ENST00000339394 CCNT1O60563 726 aaKnown RBP25.21■■□□□ 1.63
SDC3-202ENST00000339394 TDP2O95551 362 aa25.21■■□□□ 1.63
SDC3-202ENST00000339394 ZNF865P0CJ78 1059 aaPredicted RBP25.21■■□□□ 1.63
SDC3-202ENST00000339394 CYP3A7P24462 503 aa25.21■■□□□ 1.63
SDC3-202ENST00000339394 TRAPPC10P48553 1259 aa25.21■■□□□ 1.63
SDC3-202ENST00000339394 SEPT14Q6ZU15 432 aa25.21■■□□□ 1.63
SDC3-202ENST00000339394 WDR11Q9BZH6 1224 aa25.21■■□□□ 1.63
SDC3-202ENST00000339394 JADE2Q9NQC1 790 aa25.21■■□□□ 1.63
SDC3-202ENST00000339394 PDGFCQ9NRA1 345 aa25.21■■□□□ 1.63
SDC3-202ENST00000339394 ZHX1Q9UKY1 873 aaPredicted RBP25.21■■□□□ 1.63
SDC3-202ENST00000339394 NOL7Q9UMY1 257 aaKnown RBP25.21■■□□□ 1.63
SDC3-202ENST00000339394 PLXNA1Q9UIW2 1896 aa25.2■■□□□ 1.62
SDC3-202ENST00000339394 MEIS1O00470 390 aa25.2■■□□□ 1.62
SDC3-202ENST00000339394 INHAP05111 366 aa25.2■■□□□ 1.62
SDC3-202ENST00000339394 PRKAR2AP13861 404 aaKnown RBP25.2■■□□□ 1.62
SDC3-202ENST00000339394 NUCB2P80303 420 aa25.2■■□□□ 1.62
SDC3-202ENST00000339394 SLC9C1Q4G0N8 1177 aa25.2■■□□□ 1.62
SDC3-202ENST00000339394 RILPL1Q5EBL4 403 aa25.2■■□□□ 1.62
SDC3-202ENST00000339394 MAP3K21Q5TCX8 1036 aa25.2■■□□□ 1.62
SDC3-202ENST00000339394 MYSM1Q5VVJ2 828 aa25.2■■□□□ 1.62
SDC3-202ENST00000339394 PPP4R3AQ6IN85 833 aa25.2■■□□□ 1.62
SDC3-202ENST00000339394 TAPT1Q6NXT6 567 aa25.2■■□□□ 1.62
SDC3-202ENST00000339394 FAM173BQ6P4H8 233 aa25.2■■□□□ 1.62
SDC3-202ENST00000339394 NRBP1Q9UHY1 535 aa25.2■■□□□ 1.62
SDC3-202ENST00000339394 IGLV3-22A0A075B6J6 115 aa25.19■■□□□ 1.62
SDC3-202ENST00000339394 CYBAP13498 195 aa25.19■■□□□ 1.62
SDC3-202ENST00000339394 GNPTABQ3T906 1256 aa25.19■■□□□ 1.62
SDC3-202ENST00000339394 MOXD1Q6UVY6 613 aa25.19■■□□□ 1.62
SDC3-202ENST00000339394 TRPV1Q8NER1 839 aa25.19■■□□□ 1.62
SDC3-202ENST00000339394 CIZ1Q9ULV3 898 aaPredicted RBP25.19■■□□□ 1.62
SDC3-202ENST00000339394 MTMR1Q13613 665 aa25.18■■□□□ 1.62
SDC3-202ENST00000339394 NBR1Q14596 966 aa25.18■■□□□ 1.62
SDC3-202ENST00000339394 PRR16Q569H4 304 aa25.18■■□□□ 1.62
SDC3-202ENST00000339394 NLRX1Q86UT6 975 aa25.18■■□□□ 1.62
SDC3-202ENST00000339394 LENG9Q96B70 501 aa25.18■■□□□ 1.62
SDC3-202ENST00000339394 GPRASP2Q96D09 838 aa25.18■■□□□ 1.62
SDC3-202ENST00000339394 MBOAT7Q96N66 472 aa25.18■■□□□ 1.62
SDC3-202ENST00000339394 GCFC2P16383 781 aaKnown RBP25.18■■□□□ 1.62
SDC3-202ENST00000339394 CCDC144BQ3MJ40 725 aa25.18■■□□□ 1.62
SDC3-202ENST00000339394 Q4G0T1 1027 aa25.18■■□□□ 1.62
SDC3-202ENST00000339394 TTC38Q5R3I4 469 aa25.18■■□□□ 1.62
SDC3-202ENST00000339394 NIPA1Q7RTP0 329 aa25.18■■□□□ 1.62
SDC3-202ENST00000339394 PLA2G4DQ86XP0 818 aa25.18■■□□□ 1.62
SDC3-202ENST00000339394 NAP1L4Q99733 375 aaKnown RBP25.18■■□□□ 1.62
SDC3-202ENST00000339394 KCNH7Q9NS40 1196 aa25.18■■□□□ 1.62
SDC3-202ENST00000339394 DDX25Q9UHL0 483 aaKnown RBP25.18■■□□□ 1.62
SDC3-202ENST00000339394 SPATA31C2B4DYI2 1134 aa25.17■■□□□ 1.62
SDC3-202ENST00000339394 MAFGO15525 162 aa25.17■■□□□ 1.62
SDC3-202ENST00000339394 SLC37A4O43826 429 aa25.17■■□□□ 1.62
SDC3-202ENST00000339394 ARP10275 920 aa25.17■■□□□ 1.62
SDC3-202ENST00000339394 SCFD2Q8WU76 684 aa25.17■■□□□ 1.62
SDC3-202ENST00000339394 PCDHB6Q9Y5E3 794 aa25.17■■□□□ 1.62
SDC3-202ENST00000339394 MRVI1Q9Y6F6 885 aa25.17■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms