RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 PCDHA8Q9Y5H6 950 aa13.86□□□□□ -0.19
SCFD1-201ENST00000311943 A0A1W2PQ45 241 aaPredicted RBP13.85□□□□□ -0.19
SCFD1-201ENST00000311943 A0A1W2PQY0 241 aa13.85□□□□□ -0.19
SCFD1-201ENST00000311943 EDIL3O43854 480 aa13.85□□□□□ -0.19
SCFD1-201ENST00000311943 ACLYP53396 1101 aa13.85□□□□□ -0.19
SCFD1-201ENST00000311943 GJA9P57773 515 aa13.85□□□□□ -0.19
SCFD1-201ENST00000311943 STXBP2Q15833 593 aa13.85□□□□□ -0.19
SCFD1-201ENST00000311943 SH3RF1Q7Z6J0 888 aa13.85□□□□□ -0.19
SCFD1-201ENST00000311943 VTA1Q9NP79 307 aa13.85□□□□□ -0.19
SCFD1-201ENST00000311943 NRBP1Q9UHY1 535 aa13.85□□□□□ -0.19
SCFD1-201ENST00000311943 GRIN2DO15399 1336 aa13.85□□□□□ -0.19
SCFD1-201ENST00000311943 RBM47A0AV96 593 aaKnown RBP13.85□□□□□ -0.19
SCFD1-201ENST00000311943 PFKFB2O60825 505 aa13.85□□□□□ -0.19
SCFD1-201ENST00000311943 ATP9AO75110 1047 aa13.85□□□□□ -0.19
SCFD1-201ENST00000311943 ITGB5P18084 799 aa13.85□□□□□ -0.19
SCFD1-201ENST00000311943 RBM25P49756 843 aaKnown RBP13.85□□□□□ -0.19
SCFD1-201ENST00000311943 CHMP4BP1P59074 171 aa13.85□□□□□ -0.19
SCFD1-201ENST00000311943 TRIM60Q495X7 471 aa13.85□□□□□ -0.19
SCFD1-201ENST00000311943 DUSP28Q4G0W2 176 aa13.85□□□□□ -0.19
SCFD1-201ENST00000311943 PNMA2Q9UL42 364 aa13.85□□□□□ -0.19
SCFD1-201ENST00000311943 KIAA1217Q5T5P2 1943 aa13.84□□□□□ -0.19
SCFD1-201ENST00000311943 RCAN1P53805 252 aa13.84□□□□□ -0.19
SCFD1-201ENST00000311943 SP4Q02446 784 aa13.84□□□□□ -0.19
SCFD1-201ENST00000311943 NPY5RQ15761 445 aa13.84□□□□□ -0.19
SCFD1-201ENST00000311943 IQSEC1Q6DN90 963 aa13.84□□□□□ -0.19
SCFD1-201ENST00000311943 SLC39A5Q6ZMH5 540 aa13.84□□□□□ -0.19
SCFD1-201ENST00000311943 ANKLE1Q8NAG6 615 aa13.84□□□□□ -0.19
SCFD1-201ENST00000311943 ARRDC4Q8NCT1 418 aa13.84□□□□□ -0.19
SCFD1-201ENST00000311943 BACH2Q9BYV9 841 aa13.84□□□□□ -0.19
SCFD1-201ENST00000311943 DDX41Q9UJV9 622 aaKnown RBP13.84□□□□□ -0.19
SCFD1-201ENST00000311943 ATP11BQ9Y2G3 1177 aa13.84□□□□□ -0.19
SCFD1-201ENST00000311943 KBTBD13C9JR72 458 aa13.83□□□□□ -0.2
SCFD1-201ENST00000311943 PIK3CDO00329 1044 aa13.83□□□□□ -0.2
SCFD1-201ENST00000311943 ITGB8P26012 769 aa13.83□□□□□ -0.2
SCFD1-201ENST00000311943 CLK2P49760 499 aaKnown RBP13.83□□□□□ -0.2
SCFD1-201ENST00000311943 PPP2R5BQ15173 497 aa13.83□□□□□ -0.2
SCFD1-201ENST00000311943 FSCN1Q16658 493 aaKnown RBP13.83□□□□□ -0.2
SCFD1-201ENST00000311943 RNF180Q86T96 592 aa13.83□□□□□ -0.2
SCFD1-201ENST00000311943 CCDC83Q8IWF9 413 aa13.83□□□□□ -0.2
SCFD1-201ENST00000311943 OR6J1Q8NGC5 347 aa13.83□□□□□ -0.2
SCFD1-201ENST00000311943 AFG1LQ8WV93 481 aa13.83□□□□□ -0.2
SCFD1-201ENST00000311943 GJA10Q969M2 543 aa13.83□□□□□ -0.2
SCFD1-201ENST00000311943 UPF3AQ9H1J1 476 aaKnown RBP13.83□□□□□ -0.2
SCFD1-201ENST00000311943 RIC8AQ9NPQ8 531 aa13.83□□□□□ -0.2
SCFD1-201ENST00000311943 CCDC196A0A1B0GTZ2 297 aa13.83□□□□□ -0.2
SCFD1-201ENST00000311943 CPLX1O14810 134 aa13.83□□□□□ -0.2
SCFD1-201ENST00000311943 EVI5O60447 810 aa13.83□□□□□ -0.2
SCFD1-201ENST00000311943 EIF3JO75822 258 aaKnown RBP13.83□□□□□ -0.2
SCFD1-201ENST00000311943 ADCY7P51828 1080 aa13.83□□□□□ -0.2
SCFD1-201ENST00000311943 ARHGAP1Q07960 439 aa13.83□□□□□ -0.2
SCFD1-201ENST00000311943 SSRP1Q08945 709 aaKnown RBP13.83□□□□□ -0.2
SCFD1-201ENST00000311943 HSDL1Q3SXM5 330 aa13.83□□□□□ -0.2
SCFD1-201ENST00000311943 OXER1Q8TDS5 423 aa13.83□□□□□ -0.2
SCFD1-201ENST00000311943 IWS1Q96ST2 819 aa13.83□□□□□ -0.2
SCFD1-201ENST00000311943 RNF26Q9BY78 433 aaPredicted RBP13.83□□□□□ -0.2
SCFD1-201ENST00000311943 ALDH8A1Q9H2A2 487 aaPredicted RBP13.83□□□□□ -0.2
SCFD1-201ENST00000311943 PHF24Q9UPV7 400 aa13.83□□□□□ -0.2
SCFD1-201ENST00000311943 MRVI1Q9Y6F6 885 aa13.83□□□□□ -0.2
SCFD1-201ENST00000311943 FAM205CA6NFA0 338 aa13.82□□□□□ -0.2
SCFD1-201ENST00000311943 RTP1P59025 263 aa13.82□□□□□ -0.2
SCFD1-201ENST00000311943 EARS2Q5JPH6 523 aaKnown RBP13.82□□□□□ -0.2
SCFD1-201ENST00000311943 NSUN7Q8NE18 718 aaKnown RBP13.82□□□□□ -0.2
SCFD1-201ENST00000311943 SCFD2Q8WU76 684 aa13.82□□□□□ -0.2
SCFD1-201ENST00000311943 CUL5Q93034 780 aa13.82□□□□□ -0.2
SCFD1-201ENST00000311943 GTF3C6Q969F1 213 aa13.82□□□□□ -0.2
SCFD1-201ENST00000311943 TBC1D32Q96NH3 1257 aa13.82□□□□□ -0.2
SCFD1-201ENST00000311943 ANO3Q9BYT9 981 aa13.82□□□□□ -0.2
SCFD1-201ENST00000311943 MYH7BA7E2Y1 1941 aa13.82□□□□□ -0.2
SCFD1-201ENST00000311943 FRMPD4Q14CM0 1322 aa13.82□□□□□ -0.2
SCFD1-201ENST00000311943 PQBP1O60828 265 aaKnown RBP13.81□□□□□ -0.2
SCFD1-201ENST00000311943 MYL3P08590 195 aa13.81□□□□□ -0.2
SCFD1-201ENST00000311943 ARP10275 920 aa13.81□□□□□ -0.2
SCFD1-201ENST00000311943 UBA1P22314 1058 aaKnown RBP13.81□□□□□ -0.2
SCFD1-201ENST00000311943 KCNA4P22459 653 aa13.81□□□□□ -0.2
SCFD1-201ENST00000311943 VTI1AQ96AJ9 217 aa13.81□□□□□ -0.2
SCFD1-201ENST00000311943 GGPS1O95749 300 aa13.81□□□□□ -0.2
SCFD1-201ENST00000311943 ZNF286BP0CG31 522 aa13.81□□□□□ -0.2
SCFD1-201ENST00000311943 CCND2P30279 289 aa13.81□□□□□ -0.2
SCFD1-201ENST00000311943 GUCY1B3Q02153 619 aa13.81□□□□□ -0.2
SCFD1-201ENST00000311943 TLE2Q04725 743 aa13.81□□□□□ -0.2
SCFD1-201ENST00000311943 TTLL4Q14679 1199 aa13.81□□□□□ -0.2
SCFD1-201ENST00000311943 INPP4AQ96PE3 977 aaPredicted RBP13.81□□□□□ -0.2
SCFD1-201ENST00000311943 ZMYND12Q9H0C1 365 aa13.81□□□□□ -0.2
SCFD1-201ENST00000311943 AP5M1Q9H0R1 490 aa13.81□□□□□ -0.2
SCFD1-201ENST00000311943 STARD7Q9NQZ5 370 aa13.81□□□□□ -0.2
SCFD1-201ENST00000311943 FAM86B1E9PN63 330 aa13.8□□□□□ -0.2
SCFD1-201ENST00000311943 FAM86B2P0C5J1 330 aa13.8□□□□□ -0.2
SCFD1-201ENST00000311943 AKAP17AQ02040 695 aaKnown RBP13.8□□□□□ -0.2
SCFD1-201ENST00000311943 PCNX4Q63HM2 1172 aa13.8□□□□□ -0.2
SCFD1-201ENST00000311943 CYFIP1Q7L576 1253 aa13.8□□□□□ -0.2
SCFD1-201ENST00000311943 TRIM50Q86XT4 487 aa13.8□□□□□ -0.2
SCFD1-201ENST00000311943 MAP3K20Q9NYL2 800 aaKnown RBP13.8□□□□□ -0.2
SCFD1-201ENST00000311943 TRIM43BA6NCK2 446 aa13.8□□□□□ -0.2
SCFD1-201ENST00000311943 SPDYE3A6NKU9 549 aa13.8□□□□□ -0.2
SCFD1-201ENST00000311943 CST5P28325 142 aaPredicted RBP13.8□□□□□ -0.2
SCFD1-201ENST00000311943 NLRP5P59047 1200 aa13.8□□□□□ -0.2
SCFD1-201ENST00000311943 PURAQ00577 322 aaKnown RBP13.8□□□□□ -0.2
SCFD1-201ENST00000311943 HIC1Q14526 733 aa13.8□□□□□ -0.2
SCFD1-201ENST00000311943 MYSM1Q5VVJ2 828 aa13.8□□□□□ -0.2
SCFD1-201ENST00000311943 TRIM43Q96BQ3 446 aaPredicted RBP13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms