RNA–Protein interactions for RNA: ENSMUST00000213114.1

Ldlr-202, Transcript of Low-density lipoprotein receptor, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Ldlr, Length 4,318 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ldlr-202ENSMUST00000213114 Q9DAQ4 598 aa10.34□□□□□ -0.75
Ldlr-202ENSMUST00000213114 Zcchc17Q9ESX4 241 aaKnown RBP10.34□□□□□ -0.75
Ldlr-202ENSMUST00000213114 Tacc3Q9JJ11 631 aa10.34□□□□□ -0.75
Ldlr-202ENSMUST00000213114 Tnip1Q9WUU8 647 aa10.34□□□□□ -0.75
Ldlr-202ENSMUST00000213114 Vnn1Q9Z0K8 512 aa10.34□□□□□ -0.75
Ldlr-202ENSMUST00000213114 Krt19P19001 403 aa10.34□□□□□ -0.75
Ldlr-202ENSMUST00000213114 Sept2P42208 361 aaKnown RBP10.34□□□□□ -0.75
Ldlr-202ENSMUST00000213114 Prm3Q62100 101 aa10.34□□□□□ -0.75
Ldlr-202ENSMUST00000213114 Cnnm4Q69ZF7 771 aa10.34□□□□□ -0.75
Ldlr-202ENSMUST00000213114 Ttc26Q8BS45 554 aa10.34□□□□□ -0.75
Ldlr-202ENSMUST00000213114 Cog5Q8C0L8 829 aa10.34□□□□□ -0.75
Ldlr-202ENSMUST00000213114 Mad2l2Q9D752 211 aa10.34□□□□□ -0.75
Ldlr-202ENSMUST00000213114 FibpQ9JI19 357 aa10.34□□□□□ -0.75
Ldlr-202ENSMUST00000213114 Tpp1O89023 562 aa10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Gpr101Q80T62 511 aa10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Cep95Q8BVV7 827 aa10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Tmem87aQ8BXN9 555 aa10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Coa7Q921H9 231 aa10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Krt71Q9R0H5 524 aa10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Itsn1Q9Z0R4 1714 aa10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Gm45194A0A140LJG2 572 aa10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Sec24cG3X972 1096 aaKnown RBP10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Eftud2O08810 971 aaKnown RBP10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Kif5cP28738 956 aaKnown RBP10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Fermt1P59113 677 aa10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Sox13Q04891 613 aa10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Q3TTJ4 293 aa10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Sec31aQ3UPL0 1230 aaKnown RBP10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Sfi1Q3UZY0 1216 aaKnown RBP10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Mtus1Q5HZI1 1210 aa10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Prl2c1Q5SVL9 228 aa10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Tsr1Q5SWD9 803 aa10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 CrkQ64010 304 aa10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Swap70Q6A028 585 aaKnown RBP10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Kiaa1328Q6NZK5 612 aa10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Senp6Q6P7W0 1132 aa10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 E4f1Q8CCE9 783 aa10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Ciapin1Q8WTY4 309 aa10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Tex19.1Q99MV2 351 aa10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Kif1aP33173 1695 aa10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Ugt1a8D3Z748 530 aa10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Ugt1a10E9PXN7 530 aa10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Tnni3P48787 211 aa10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Ttbk2Q3UVR3 1243 aa10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Trim21Q62191 470 aa10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Glis3Q6XP49 780 aa10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Ccdc169Q8BXX9 214 aa10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Lrit1Q8K099 624 aa10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 AdarQ99MU3 1178 aaKnown RBP10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Armc9Q9D2I5 817 aa10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Sdr42e1Q9D665 394 aa10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Nup153E9Q3G8 1462 aaKnown RBP10.33□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Tspyl1O88852 379 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Nedd4P46935 887 aaKnown RBP10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 GssP51855 474 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 LbrQ3U9G9 626 aaKnown RBP10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Mars2Q499X9 586 aaKnown RBP10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Cct6bQ61390 531 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Brd2Q7JJ13 798 aaKnown RBP10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Trerf1Q8BXJ2 1205 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Trim9Q8C7M3 817 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Ccdc91Q9D8L5 442 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Arhgef10lA2AWP8 1280 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Gm3893E9Q1I1 302 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Speer2E9Q9U2 264 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Gm5134E9QAB5 671 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Vmn2r78K7N6U5 853 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Krt13P08730 437 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Calb1P12658 261 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Ctnna1P26231 906 aaKnown RBP10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Chrna5Q2MKA5 467 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Q8C5C9 218 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Rab3il1Q8VDV3 383 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Ddx39aQ8VDW0 427 aaKnown RBP10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Tmco5aQ9D9D5 303 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Prkab1Q9R078 270 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Crb1Q8VHS2 1405 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Ddx49Q4FZF3 480 aaKnown RBP10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Lamc2Q61092 1191 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Krt74Q6IFZ9 495 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Psmd2Q8VDM4 908 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Dbndd2Q9CRD4 158 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Cst12Q9DAN8 128 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Pdzd4Q9QY39 772 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Col16a1Q8BLX7 1580 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 1700016G14RikA0A286YCZ6 238 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Cdc27A2A6Q5 825 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Dnaaf5B9EJR8 853 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Ccdc170D3YXL0 722 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Sema6bO54951 886 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Gna14P30677 355 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Stmn4P63042 189 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Rpusd2Q149F1 553 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Ms4a5Q810P8 197 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Kctd3Q8BFX3 815 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 4921504E06RikQ8CET2 560 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Spats2Q8K1N4 545 aaKnown RBP10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Alpk1Q9CXB8 1231 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Gfpt2Q9Z2Z9 682 aa10.32□□□□□ -0.76
Ldlr-202ENSMUST00000213114 Npy5rO70342 466 aa10.31□□□□□ -0.76
Retrieved 100 of 22,080 RNA–protein pairs in 10.7 ms