Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Gm25239-201ENSMUST00000174915 86 ntBASIC40.71■■■■■ 4.11
Trim9Q8C7M3 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC38.25■■■■□ 3.71
Trim9Q8C7M3 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC37.34■■■■□ 3.57
Trim9Q8C7M3 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC37.19■■■■□ 3.54
Trim9Q8C7M3 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC36.94■■■■□ 3.5
Trim9Q8C7M3 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC36.88■■■■□ 3.49
Trim9Q8C7M3 Gm15042-201ENSMUST00000120212 883 ntBASIC36.15■■■■□ 3.38
Trim9Q8C7M3 Psd-208ENSMUST00000224556 2034 ntBASIC35.57■■■■□ 3.28
Trim9Q8C7M3 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC35.56■■■■□ 3.28
Trim9Q8C7M3 Gm15045-201ENSMUST00000117359 883 ntBASIC35.5■■■■□ 3.27
Trim9Q8C7M3 Gm24109-201ENSMUST00000175489 103 ntBASIC35.04■■■■□ 3.2
Trim9Q8C7M3 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC34.94■■■■□ 3.18
Trim9Q8C7M3 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC34.86■■■■□ 3.17
Trim9Q8C7M3 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC34.8■■■■□ 3.16
Trim9Q8C7M3 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC34.79■■■■□ 3.16
Trim9Q8C7M3 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC34.32■■■■□ 3.08
Trim9Q8C7M3 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC34.24■■■■□ 3.07
Trim9Q8C7M3 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC34.18■■■■□ 3.06
Trim9Q8C7M3 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC34.18■■■■□ 3.06
Trim9Q8C7M3 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC34.16■■■■□ 3.06
Trim9Q8C7M3 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC34.15■■■■□ 3.06
Trim9Q8C7M3 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC34.12■■■■□ 3.05
Trim9Q8C7M3 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC34.09■■■■□ 3.05
Trim9Q8C7M3 Gm23366-201ENSMUST00000175022 89 ntBASIC34.05■■■■□ 3.04
Trim9Q8C7M3 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC34.02■■■■□ 3.04
Trim9Q8C7M3 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC33.98■■■■□ 3.03
Trim9Q8C7M3 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC33.95■■■■□ 3.03
Trim9Q8C7M3 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC33.87■■■■□ 3.01
Trim9Q8C7M3 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC33.84■■■■□ 3.01
Trim9Q8C7M3 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC33.76■■■■□ 3
Trim9Q8C7M3 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC33.74■■■□□ 2.99
Trim9Q8C7M3 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC33.68■■■□□ 2.98
Trim9Q8C7M3 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC33.56■■■□□ 2.96
Trim9Q8C7M3 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC33.54■■■□□ 2.96
Trim9Q8C7M3 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC33.52■■■□□ 2.96
Trim9Q8C7M3 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC33.25■■■□□ 2.91
Trim9Q8C7M3 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC33.25■■■□□ 2.91
Trim9Q8C7M3 AC153911.1-202ENSMUST00000218534 1034 ntBASIC33.18■■■□□ 2.9
Trim9Q8C7M3 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC33.16■■■□□ 2.9
Trim9Q8C7M3 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC33.1■■■□□ 2.89
Trim9Q8C7M3 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC33.01■■■□□ 2.87
Trim9Q8C7M3 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC32.95■■■□□ 2.86
Trim9Q8C7M3 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC32.72■■■□□ 2.83
Trim9Q8C7M3 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
Trim9Q8C7M3 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
Trim9Q8C7M3 Gm10524-201ENSMUST00000181931 1893 ntBASIC32.62■■■□□ 2.81
Trim9Q8C7M3 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
Trim9Q8C7M3 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
Trim9Q8C7M3 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC32.41■■■□□ 2.78
Trim9Q8C7M3 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC32.35■■■□□ 2.77
Trim9Q8C7M3 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
Trim9Q8C7M3 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC32.31■■■□□ 2.76
Trim9Q8C7M3 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
Trim9Q8C7M3 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
Trim9Q8C7M3 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
Trim9Q8C7M3 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
Trim9Q8C7M3 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.72
Trim9Q8C7M3 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC32■■■□□ 2.71
Trim9Q8C7M3 CT025624.2-201ENSMUST00000223609 1909 ntBASIC31.97■■■□□ 2.71
Trim9Q8C7M3 Gm25238-201ENSMUST00000174914 89 ntBASIC31.95■■■□□ 2.71
Trim9Q8C7M3 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
Trim9Q8C7M3 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC31.93■■■□□ 2.7
Trim9Q8C7M3 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC31.9■■■□□ 2.7
Trim9Q8C7M3 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC31.89■■■□□ 2.7
Trim9Q8C7M3 Gm42596-201ENSMUST00000196305 1958 ntBASIC31.86■■■□□ 2.69
Trim9Q8C7M3 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC31.86■■■□□ 2.69
Trim9Q8C7M3 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC31.86■■■□□ 2.69
Trim9Q8C7M3 Gm27325-201ENSMUST00000175467 74 ntBASIC31.82■■■□□ 2.68
Trim9Q8C7M3 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC31.8■■■□□ 2.68
Trim9Q8C7M3 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC31.77■■■□□ 2.68
Trim9Q8C7M3 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
Trim9Q8C7M3 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC31.7■■■□□ 2.67
Trim9Q8C7M3 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
Trim9Q8C7M3 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
Trim9Q8C7M3 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC31.56■■■□□ 2.64
Trim9Q8C7M3 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
Trim9Q8C7M3 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
Trim9Q8C7M3 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Trim9Q8C7M3 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC31.36■■■□□ 2.61
Trim9Q8C7M3 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC31.35■■■□□ 2.61
Trim9Q8C7M3 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Trim9Q8C7M3 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Trim9Q8C7M3 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC31.3■■■□□ 2.6
Trim9Q8C7M3 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
Trim9Q8C7M3 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
Trim9Q8C7M3 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
Trim9Q8C7M3 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
Trim9Q8C7M3 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC31.15■■■□□ 2.58
Trim9Q8C7M3 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Trim9Q8C7M3 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
Trim9Q8C7M3 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
Trim9Q8C7M3 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC31.09■■■□□ 2.57
Trim9Q8C7M3 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
Trim9Q8C7M3 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC31.06■■■□□ 2.56
Trim9Q8C7M3 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Trim9Q8C7M3 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
Trim9Q8C7M3 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
Trim9Q8C7M3 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC30.96■■■□□ 2.55
Trim9Q8C7M3 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC30.92■■■□□ 2.54
Trim9Q8C7M3 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
Retrieved 100 of 76,532 protein–RNA pairs in 17.2 ms