Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Gm25239-201ENSMUST00000174915 86 ntBASIC40,71■■■■■ 4,11
Trim9Q8C7M3 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC38,25■■■■□ 3,71
Trim9Q8C7M3 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC37,34■■■■□ 3,57
Trim9Q8C7M3 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC37,19■■■■□ 3,54
Trim9Q8C7M3 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC36,94■■■■□ 3,5
Trim9Q8C7M3 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC36,88■■■■□ 3,49
Trim9Q8C7M3 Gm15042-201ENSMUST00000120212 883 ntBASIC36,15■■■■□ 3,38
Trim9Q8C7M3 Psd-208ENSMUST00000224556 2034 ntBASIC35,57■■■■□ 3,28
Trim9Q8C7M3 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC35,56■■■■□ 3,28
Trim9Q8C7M3 Gm15045-201ENSMUST00000117359 883 ntBASIC35,5■■■■□ 3,27
Trim9Q8C7M3 Gm24109-201ENSMUST00000175489 103 ntBASIC35,04■■■■□ 3,2
Trim9Q8C7M3 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC34,94■■■■□ 3,18
Trim9Q8C7M3 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC34,86■■■■□ 3,17
Trim9Q8C7M3 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC34,8■■■■□ 3,16
Trim9Q8C7M3 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC34,79■■■■□ 3,16
Trim9Q8C7M3 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC34,32■■■■□ 3,08
Trim9Q8C7M3 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC34,24■■■■□ 3,07
Trim9Q8C7M3 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC34,18■■■■□ 3,06
Trim9Q8C7M3 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC34,18■■■■□ 3,06
Trim9Q8C7M3 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC34,16■■■■□ 3,06
Trim9Q8C7M3 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC34,15■■■■□ 3,06
Trim9Q8C7M3 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC34,12■■■■□ 3,05
Trim9Q8C7M3 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC34,09■■■■□ 3,05
Trim9Q8C7M3 Gm23366-201ENSMUST00000175022 89 ntBASIC34,05■■■■□ 3,04
Trim9Q8C7M3 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC34,02■■■■□ 3,04
Trim9Q8C7M3 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC33,98■■■■□ 3,03
Trim9Q8C7M3 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC33,95■■■■□ 3,03
Trim9Q8C7M3 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC33,87■■■■□ 3,01
Trim9Q8C7M3 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC33,84■■■■□ 3,01
Trim9Q8C7M3 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC33,76■■■■□ 3
Trim9Q8C7M3 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC33,74■■■□□ 2,99
Trim9Q8C7M3 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC33,68■■■□□ 2,98
Trim9Q8C7M3 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC33,56■■■□□ 2,96
Trim9Q8C7M3 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC33,54■■■□□ 2,96
Trim9Q8C7M3 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC33,52■■■□□ 2,96
Trim9Q8C7M3 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC33,25■■■□□ 2,91
Trim9Q8C7M3 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC33,25■■■□□ 2,91
Trim9Q8C7M3 AC153911.1-202ENSMUST00000218534 1034 ntBASIC33,18■■■□□ 2,9
Trim9Q8C7M3 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC33,16■■■□□ 2,9
Trim9Q8C7M3 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC33,1■■■□□ 2,89
Trim9Q8C7M3 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC33,01■■■□□ 2,87
Trim9Q8C7M3 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC32,95■■■□□ 2,86
Trim9Q8C7M3 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC32,72■■■□□ 2,83
Trim9Q8C7M3 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC32,72■■■□□ 2,83
Trim9Q8C7M3 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC32,64■■■□□ 2,82
Trim9Q8C7M3 Gm10524-201ENSMUST00000181931 1893 ntBASIC32,62■■■□□ 2,81
Trim9Q8C7M3 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC32,62■■■□□ 2,81
Trim9Q8C7M3 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC32,53■■■□□ 2,8
Trim9Q8C7M3 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC32,41■■■□□ 2,78
Trim9Q8C7M3 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC32,35■■■□□ 2,77
Trim9Q8C7M3 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC32,32■■■□□ 2,76
Trim9Q8C7M3 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC32,31■■■□□ 2,76
Trim9Q8C7M3 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC32,23■■■□□ 2,75
Trim9Q8C7M3 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC32,19■■■□□ 2,74
Trim9Q8C7M3 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC32,15■■■□□ 2,74
Trim9Q8C7M3 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC32,06■■■□□ 2,72
Trim9Q8C7M3 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC32,01■■■□□ 2,72
Trim9Q8C7M3 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC32■■■□□ 2,71
Trim9Q8C7M3 CT025624.2-201ENSMUST00000223609 1909 ntBASIC31,97■■■□□ 2,71
Trim9Q8C7M3 Gm25238-201ENSMUST00000174914 89 ntBASIC31,95■■■□□ 2,71
Trim9Q8C7M3 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC31,95■■■□□ 2,71
Trim9Q8C7M3 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC31,93■■■□□ 2,7
Trim9Q8C7M3 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC31,9■■■□□ 2,7
Trim9Q8C7M3 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC31,89■■■□□ 2,7
Trim9Q8C7M3 Gm42596-201ENSMUST00000196305 1958 ntBASIC31,86■■■□□ 2,69
Trim9Q8C7M3 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC31,86■■■□□ 2,69
Trim9Q8C7M3 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC31,86■■■□□ 2,69
Trim9Q8C7M3 Gm27325-201ENSMUST00000175467 74 ntBASIC31,82■■■□□ 2,68
Trim9Q8C7M3 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC31,8■■■□□ 2,68
Trim9Q8C7M3 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC31,77■■■□□ 2,68
Trim9Q8C7M3 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC31,71■■■□□ 2,67
Trim9Q8C7M3 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC31,7■■■□□ 2,67
Trim9Q8C7M3 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC31,65■■■□□ 2,66
Trim9Q8C7M3 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC31,57■■■□□ 2,64
Trim9Q8C7M3 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC31,56■■■□□ 2,64
Trim9Q8C7M3 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC31,54■■■□□ 2,64
Trim9Q8C7M3 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC31,47■■■□□ 2,63
Trim9Q8C7M3 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC31,36■■■□□ 2,61
Trim9Q8C7M3 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC31,36■■■□□ 2,61
Trim9Q8C7M3 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC31,35■■■□□ 2,61
Trim9Q8C7M3 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC31,31■■■□□ 2,6
Trim9Q8C7M3 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC31,31■■■□□ 2,6
Trim9Q8C7M3 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC31,3■■■□□ 2,6
Trim9Q8C7M3 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC31,26■■■□□ 2,6
Trim9Q8C7M3 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC31,26■■■□□ 2,59
Trim9Q8C7M3 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC31,24■■■□□ 2,59
Trim9Q8C7M3 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC31,18■■■□□ 2,58
Trim9Q8C7M3 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC31,15■■■□□ 2,58
Trim9Q8C7M3 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC31,14■■■□□ 2,58
Trim9Q8C7M3 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC31,1■■■□□ 2,57
Trim9Q8C7M3 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC31,1■■■□□ 2,57
Trim9Q8C7M3 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC31,09■■■□□ 2,57
Trim9Q8C7M3 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC31,06■■■□□ 2,56
Trim9Q8C7M3 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC31,06■■■□□ 2,56
Trim9Q8C7M3 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC31,04■■■□□ 2,56
Trim9Q8C7M3 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC31,02■■■□□ 2,56
Trim9Q8C7M3 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2,55
Trim9Q8C7M3 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC30,96■■■□□ 2,55
Trim9Q8C7M3 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC30,92■■■□□ 2,54
Trim9Q8C7M3 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC30,92■■■□□ 2,54
Retrieved 100 of 76,532 protein–RNA pairs in 15,1 ms