RNA–Protein interactions for RNA: YPL177C

CUP9, Transcript of Homeodomain-containing transcriptional repressor, yeast

Gene CUP9, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CUP9	YPL177C	SMF1	P38925	575 aa		3.44	□□□□□ -1.86
CUP9	YPL177C	DHH1	P39517	506 aa	Known RBP	3.44	□□□□□ -1.86
CUP9	YPL177C	RPM2	Q02773	1202 aa		3.44	□□□□□ -1.86
CUP9	YPL177C	BNA5	Q05979	453 aa		3.44	□□□□□ -1.86
CUP9	YPL177C	CFT2	Q12102	859 aa	Predicted RBP	3.44	□□□□□ -1.86
CUP9	YPL177C	RKM5	Q12367	367 aa		3.44	□□□□□ -1.86
CUP9	YPL177C	CAR1	P00812	333 aa	Known RBP	3.43	□□□□□ -1.86
CUP9	YPL177C	RPL15A	P05748	204 aa	Known RBP	3.43	□□□□□ -1.86
CUP9	YPL177C	RED1	P14291	827 aa		3.43	□□□□□ -1.86
CUP9	YPL177C	YCR007C	P25354	239 aa		3.43	□□□□□ -1.86
CUP9	YPL177C	ATP11	P32453	318 aa		3.43	□□□□□ -1.86
CUP9	YPL177C	UTP9	P38882	575 aa	Known RBP	3.43	□□□□□ -1.86
CUP9	YPL177C	YMR147W	P40218	223 aa	Known RBP	3.43	□□□□□ -1.86
CUP9	YPL177C	HXT14	P42833	540 aa		3.43	□□□□□ -1.86
CUP9	YPL177C	GPI1	P53306	609 aa		3.43	□□□□□ -1.86
CUP9	YPL177C	SLG1	P54867	378 aa		3.43	□□□□□ -1.86
CUP9	YPL177C	TAP42	Q04372	366 aa		3.43	□□□□□ -1.86
CUP9	YPL177C	RBS1	Q05672	457 aa	Known RBP	3.43	□□□□□ -1.86
CUP9	YPL177C	HCR1	Q05775	265 aa	Known RBP	3.43	□□□□□ -1.86
CUP9	YPL177C	MRPL51	Q06090	140 aa	Predicted RBP	3.43	□□□□□ -1.86
CUP9	YPL177C	YDL009C	Q12210	107 aa		3.43	□□□□□ -1.86
CUP9	YPL177C	YOL159C-A	Q3E769	90 aa		3.43	□□□□□ -1.86
CUP9	YPL177C	ERG3	P32353	365 aa		3.42	□□□□□ -1.86
CUP9	YPL177C	SEC66	P33754	206 aa		3.42	□□□□□ -1.86
CUP9	YPL177C	MTC4	P38335	694 aa	Known RBP	3.42	□□□□□ -1.86
CUP9	YPL177C	SYG1	P40528	902 aa		3.42	□□□□□ -1.86
CUP9	YPL177C	RPR2	P40571	144 aa		3.42	□□□□□ -1.86
CUP9	YPL177C	POP1	P41812	875 aa		3.42	□□□□□ -1.86
CUP9	YPL177C	RTT101	P47050	842 aa		3.42	□□□□□ -1.86
CUP9	YPL177C	KTR5	P53966	522 aa	Predicted RBP	3.42	□□□□□ -1.86
CUP9	YPL177C	SYF1	Q04048	859 aa	Predicted RBP	3.42	□□□□□ -1.86
CUP9	YPL177C	RTN2	Q12443	393 aa		3.42	□□□□□ -1.86
CUP9	YPL177C	PGA3	Q12746	312 aa	Known RBP	3.42	□□□□□ -1.86
CUP9	YPL177C	MTF1	P14908	341 aa	Known RBP	3.41	□□□□□ -1.86
CUP9	YPL177C	GLK1	P17709	500 aa	Known RBP	3.41	□□□□□ -1.86
CUP9	YPL177C	PRO3	P32263	286 aa	Known RBP	3.41	□□□□□ -1.86
CUP9	YPL177C	YFR016C	P43597	1233 aa	Known RBP	3.41	□□□□□ -1.86
CUP9	YPL177C	OCA1	P50946	238 aa	Predicted RBP	3.41	□□□□□ -1.86
CUP9	YPL177C	YGL108C	P53139	140 aa		3.41	□□□□□ -1.86
CUP9	YPL177C	IMP4	P53941	290 aa	Known RBP	3.41	□□□□□ -1.86
CUP9	YPL177C	IRC15	Q02733	499 aa		3.41	□□□□□ -1.86
CUP9	YPL177C	RQC1	Q05468	723 aa	Known RBP	3.41	□□□□□ -1.86
CUP9	YPL177C	YLR287C	Q05881	355 aa		3.41	□□□□□ -1.86
CUP9	YPL177C	AYT1	Q12226	474 aa		3.41	□□□□□ -1.86
CUP9	YPL177C	LSP1	Q12230	341 aa	Known RBP	3.41	□□□□□ -1.86
CUP9	YPL177C	SET6	Q12529	373 aa		3.41	□□□□□ -1.86
CUP9	YPL177C	SPB1	P25582	841 aa	Predicted RBP	3.4	□□□□□ -1.87
CUP9	YPL177C	FUN19	P28003	413 aa	Predicted RBP	3.4	□□□□□ -1.87
CUP9	YPL177C	SPC110	P32380	944 aa		3.4	□□□□□ -1.87
CUP9	YPL177C	LOS1	P33418	1100 aa	Predicted RBP	3.4	□□□□□ -1.87
CUP9	YPL177C	SAS3	P34218	831 aa		3.4	□□□□□ -1.87
CUP9	YPL177C	JNM1	P36224	373 aa		3.4	□□□□□ -1.87
CUP9	YPL177C	RPH1	P39956	796 aa		3.4	□□□□□ -1.87
CUP9	YPL177C	KEL3	Q08979	651 aa	Predicted RBP	3.4	□□□□□ -1.87
CUP9	YPL177C	RRD2	Q12461	358 aa		3.4	□□□□□ -1.87
CUP9	YPL177C	RPL3	P14126	387 aa	Known RBP	3.39	□□□□□ -1.87
CUP9	YPL177C	PPH22	P23595	377 aa		3.39	□□□□□ -1.87
CUP9	YPL177C	IDH2	P28241	369 aa	Known RBP	3.39	□□□□□ -1.87
CUP9	YPL177C	AFG1	P32317	509 aa		3.39	□□□□□ -1.87
CUP9	YPL177C	HXT3	P32466	567 aa	Known RBP	3.39	□□□□□ -1.87
CUP9	YPL177C	THI2	P38141	450 aa		3.39	□□□□□ -1.87
CUP9	YPL177C	MDM31	P38880	579 aa		3.39	□□□□□ -1.87
CUP9	YPL177C	KRE9	P39005	276 aa		3.39	□□□□□ -1.87
CUP9	YPL177C	SHO1	P40073	367 aa		3.39	□□□□□ -1.87
CUP9	YPL177C	VMA13	P41807	478 aa	Known RBP	3.39	□□□□□ -1.87
CUP9	YPL177C	SRB7	P47822	140 aa		3.39	□□□□□ -1.87
CUP9	YPL177C	YGR149W	P48236	432 aa		3.39	□□□□□ -1.87
CUP9	YPL177C	YMR155W	Q03795	547 aa		3.39	□□□□□ -1.87
CUP9	YPL177C	SMA2	Q04658	369 aa		3.39	□□□□□ -1.87
CUP9	YPL177C	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	3.39	□□□□□ -1.87	not detected
CUP9	YPL177C	RRG1	Q12167	365 aa	Predicted RBP	3.39	□□□□□ -1.87
CUP9	YPL177C	BRR1	Q99177	341 aa	Predicted RBP	3.39	□□□□□ -1.87
CUP9	YPL177C	HEM2	P05373	342 aa		3.38	□□□□□ -1.87
CUP9	YPL177C	GDH1	P07262	454 aa	Known RBP	3.38	□□□□□ -1.87
CUP9	YPL177C	RPL20A	P0CX23	172 aa	Known RBP	3.38	□□□□□ -1.87
CUP9	YPL177C	RPL20B	P0CX24	172 aa	Predicted RBP	3.38	□□□□□ -1.87
CUP9	YPL177C	PRP16	P15938	1071 aa	Predicted RBP	3.38	□□□□□ -1.87
CUP9	YPL177C	ATP10	P18496	279 aa		3.38	□□□□□ -1.87
CUP9	YPL177C	MCK1	P21965	375 aa	Known RBP	3.38	□□□□□ -1.87
CUP9	YPL177C	BUB3	P26449	341 aa		3.38	□□□□□ -1.87
CUP9	YPL177C	RAD14	P28519	371 aa		3.38	□□□□□ -1.87
CUP9	YPL177C	AGA1	P32323	725 aa		3.38	□□□□□ -1.87
CUP9	YPL177C	HAT2	P39984	401 aa		3.38	□□□□□ -1.87
CUP9	YPL177C	GPD2	P41911	440 aa	Known RBP	3.38	□□□□□ -1.87
CUP9	YPL177C	RPA49	Q01080	415 aa	Predicted RBP	3.38	□□□□□ -1.87
CUP9	YPL177C	ERP1	Q05359	219 aa	Known RBP	3.38	□□□□□ -1.87
CUP9	YPL177C	VPS74	Q06385	345 aa		3.38	□□□□□ -1.87
CUP9	YPL177C	YBR298C-A	Q8TGK4	73 aa		3.38	□□□□□ -1.87
CUP9	YPL177C	FUR1	P18562	216 aa	Known RBP	3.37	□□□□□ -1.87
CUP9	YPL177C	EXO70	P19658	623 aa		3.37	□□□□□ -1.87
CUP9	YPL177C	FRE2	P36033	711 aa		3.37	□□□□□ -1.87
CUP9	YPL177C	PMU1	P36069	295 aa		3.37	□□□□□ -1.87
CUP9	YPL177C	OTU2	P38747	307 aa	Known RBP	3.37	□□□□□ -1.87
CUP9	YPL177C	FAU1	P40099	211 aa		3.37	□□□□□ -1.87
CUP9	YPL177C	YJL213W	P40896	331 aa		3.37	□□□□□ -1.87
CUP9	YPL177C	GWT1	P47026	490 aa		3.37	□□□□□ -1.87
CUP9	YPL177C	YDL186W	P48568	277 aa		3.37	□□□□□ -1.87
CUP9	YPL177C	COS10	P52924	374 aa		3.37	□□□□□ -1.87
CUP9	YPL177C	YGR250C	P53316	781 aa	Known RBP	3.37	□□□□□ -1.87
CUP9	YPL177C	SIL1	Q08199	421 aa		3.37	□□□□□ -1.87

Retrieved 100 of 5,963 RNA–protein pairs in 14.3 ms