RNA–Protein interactions for RNA: YOR106W

VAM3, Transcript of Syntaxin-like vacuolar t-SNARE, yeast

Gene VAM3, Length 852 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VAM3	YOR106W	RAV1	P47104	1357 aa		4.25	□□□□□ -1.73
VAM3	YOR106W	MES1	P00958	751 aa	Known RBP	4.24	□□□□□ -1.73
VAM3	YOR106W	GAL80	P04387	435 aa		4.24	□□□□□ -1.73
VAM3	YOR106W	ELO2	P25358	347 aa		4.24	□□□□□ -1.73
VAM3	YOR106W	MBB1	P39534	108 aa		4.23	□□□□□ -1.73
VAM3	YOR106W	UPF3	P48412	387 aa	Known RBP	4.23	□□□□□ -1.73
VAM3	YOR106W	SHE10	P53075	577 aa		4.23	□□□□□ -1.73
VAM3	YOR106W	PIR3	Q03180	325 aa		4.23	□□□□□ -1.73
VAM3	YOR106W	RPC11	Q04307	110 aa	Predicted RBP	4.23	□□□□□ -1.73
VAM3	YOR106W	HEL2	Q05580	639 aa	Known RBP	4.23	□□□□□ -1.73
VAM3	YOR106W	DFR1	P07807	211 aa	Known RBP RIP-Chip data	4.22	□□□□□ -1.73	not detected
VAM3	YOR106W	GFD2	P25370	566 aa	Known RBP	4.22	□□□□□ -1.73
VAM3	YOR106W	PRD1	P25375	712 aa		4.22	□□□□□ -1.73
VAM3	YOR106W	MRP4	P32902	394 aa		4.22	□□□□□ -1.73
VAM3	YOR106W	WBP1	P33767	430 aa	Known RBP	4.22	□□□□□ -1.73
VAM3	YOR106W	ERP2	P39704	215 aa		4.22	□□□□□ -1.73
VAM3	YOR106W	YFL067W	P43537	175 aa		4.22	□□□□□ -1.73
VAM3	YOR106W	CAF40	P53829	373 aa		4.22	□□□□□ -1.73
VAM3	YOR106W	KEL3	Q08979	651 aa	Predicted RBP	4.22	□□□□□ -1.73
VAM3	YOR106W	OLE1	P21147	510 aa	Known RBP	4.21	□□□□□ -1.74
VAM3	YOR106W	RNA14	P25298	677 aa	Known RBP	4.21	□□□□□ -1.74
VAM3	YOR106W	MFT1	P33441	392 aa	Known RBP	4.21	□□□□□ -1.74
VAM3	YOR106W	FRE2	P36033	711 aa		4.21	□□□□□ -1.74
VAM3	YOR106W	MUM2	P38236	366 aa		4.21	□□□□□ -1.74
VAM3	YOR106W	DOT5	P40553	215 aa		4.21	□□□□□ -1.74
VAM3	YOR106W	POP1	P41812	875 aa		4.21	□□□□□ -1.74
VAM3	YOR106W	RMD8	P43620	662 aa		4.21	□□□□□ -1.74
VAM3	YOR106W	CAF130	P53280	1122 aa	Predicted RBP	4.21	□□□□□ -1.74
VAM3	YOR106W	RKM5	Q12367	367 aa		4.21	□□□□□ -1.74
VAM3	YOR106W	YER078W-A	Q3E7A2	54 aa		4.21	□□□□□ -1.74
VAM3	YOR106W	GCN4	P03069	281 aa		4.2	□□□□□ -1.74
VAM3	YOR106W	DEG1	P31115	442 aa	Known RBP	4.2	□□□□□ -1.74
VAM3	YOR106W	CBP4	P37267	147 aa		4.2	□□□□□ -1.74
VAM3	YOR106W	FAU1	P40099	211 aa		4.2	□□□□□ -1.74
VAM3	YOR106W	URB2	P47108	1174 aa		4.2	□□□□□ -1.74
VAM3	YOR106W	FOB1	O13329	566 aa		4.19	□□□□□ -1.74
VAM3	YOR106W	HIP1	P06775	603 aa		4.19	□□□□□ -1.74
VAM3	YOR106W	SPT15	P13393	240 aa	Known RBP	4.19	□□□□□ -1.74
VAM3	YOR106W	LDB16	P25587	256 aa		4.19	□□□□□ -1.74
VAM3	YOR106W	BUB3	P26449	341 aa		4.19	□□□□□ -1.74
VAM3	YOR106W	CRM1	P30822	1084 aa	Known RBP	4.19	□□□□□ -1.74
VAM3	YOR106W	NDI1	P32340	513 aa		4.19	□□□□□ -1.74
VAM3	YOR106W	YBL059W	P34224	193 aa		4.19	□□□□□ -1.74
VAM3	YOR106W	MRPL4	P36517	319 aa		4.19	□□□□□ -1.74
VAM3	YOR106W	SRO77	P38163	1010 aa		4.19	□□□□□ -1.74
VAM3	YOR106W	PET130	P47065	347 aa		4.19	□□□□□ -1.74
VAM3	YOR106W	VPS75	P53853	264 aa		4.19	□□□□□ -1.74
VAM3	YOR106W	YOR387C	Q08910	206 aa		4.19	□□□□□ -1.74
VAM3	YOR106W	RRP12	Q12754	1228 aa	Known RBP	4.19	□□□□□ -1.74
VAM3	YOR106W	ATP11	P32453	318 aa		4.18	□□□□□ -1.74
VAM3	YOR106W	PAD1	P33751	242 aa	Known RBP RIP-Chip data	4.18	□□□□□ -1.74	not detected
VAM3	YOR106W	NDT80	P38830	627 aa		4.18	□□□□□ -1.74
VAM3	YOR106W	AVT4	P50944	713 aa		4.18	□□□□□ -1.74
VAM3	YOR106W	OCA1	P50946	238 aa	Predicted RBP	4.18	□□□□□ -1.74
VAM3	YOR106W	RRN11	Q04712	507 aa		4.18	□□□□□ -1.74
VAM3	YOR106W	YDL007C-A	Q2V2Q0	85 aa		4.18	□□□□□ -1.74
VAM3	YOR106W	HHF1	P02309	103 aa	Known RBP	4.17	□□□□□ -1.74
VAM3	YOR106W	LEU4	P06208	619 aa	Known RBP	4.17	□□□□□ -1.74
VAM3	YOR106W	OGG1	P53397	376 aa	Predicted RBP	4.17	□□□□□ -1.74
VAM3	YOR106W	PDS5	Q04264	1277 aa		4.17	□□□□□ -1.74
VAM3	YOR106W	RPL31B	P0C2H9	113 aa	Known RBP	4.16	□□□□□ -1.74
VAM3	YOR106W	HEM15	P16622	393 aa		4.16	□□□□□ -1.74
VAM3	YOR106W	OCA4	P25366	362 aa		4.16	□□□□□ -1.74
VAM3	YOR106W	MRE11	P32829	692 aa		4.16	□□□□□ -1.74
VAM3	YOR106W	CST26	P38226	397 aa		4.16	□□□□□ -1.74
VAM3	YOR106W	YIL067C	P40514	678 aa		4.16	□□□□□ -1.74
VAM3	YOR106W	SYG1	P40528	902 aa		4.16	□□□□□ -1.74
VAM3	YOR106W	ADD37	Q03233	198 aa		4.16	□□□□□ -1.74
VAM3	YOR106W	YDR239C	Q03780	787 aa		4.16	□□□□□ -1.74
VAM3	YOR106W	PBA1	Q05778	276 aa		4.16	□□□□□ -1.74
VAM3	YOR106W	SEC39	Q12745	709 aa		4.16	□□□□□ -1.74
VAM3	YOR106W	NAM9	P27929	486 aa		4.15	□□□□□ -1.75
VAM3	YOR106W	GLC7	P32598	312 aa	Known RBP	4.15	□□□□□ -1.75
VAM3	YOR106W	NAT2	P37293	288 aa		4.15	□□□□□ -1.75
VAM3	YOR106W	ISC1	P40015	477 aa	Known RBP	4.15	□□□□□ -1.75
VAM3	YOR106W	GCD10	P41814	478 aa		4.15	□□□□□ -1.75
VAM3	YOR106W	POP6	P53218	158 aa		4.15	□□□□□ -1.75
VAM3	YOR106W	BTN2	P53286	410 aa		4.15	□□□□□ -1.75
VAM3	YOR106W	RPT6	Q01939	405 aa	Known RBP	4.15	□□□□□ -1.75
VAM3	YOR106W	SVL3	Q03088	825 aa	Known RBP	4.15	□□□□□ -1.75
VAM3	YOR106W	MFB1	Q04922	465 aa		4.15	□□□□□ -1.75
VAM3	YOR106W	ESA1	Q08649	445 aa		4.15	□□□□□ -1.75
VAM3	YOR106W	YAR066W	P0CX18	203 aa		4.14	□□□□□ -1.75
VAM3	YOR106W	YHR214W	P0CX19	203 aa		4.14	□□□□□ -1.75
VAM3	YOR106W	YEL045C	P32616	141 aa		4.14	□□□□□ -1.75
VAM3	YOR106W	MET28	P40573	187 aa		4.14	□□□□□ -1.75
VAM3	YOR106W	ARK1	P53974	638 aa		4.14	□□□□□ -1.75
VAM3	YOR106W	SLG1	P54867	378 aa		4.14	□□□□□ -1.75
VAM3	YOR106W	ELP3	Q02908	557 aa	Known RBP	4.14	□□□□□ -1.75
VAM3	YOR106W	SOV1	Q04748	898 aa		4.14	□□□□□ -1.75
VAM3	YOR106W	PAL1	Q05518	499 aa	Known RBP	4.14	□□□□□ -1.75
VAM3	YOR106W	YML133C	Q03099	1374 aa		4.14	□□□□□ -1.75
VAM3	YOR106W	YLL067C	Q07888	1374 aa		4.14	□□□□□ -1.75
VAM3	YOR106W	YLL066C	Q99208	1374 aa		4.14	□□□□□ -1.75
VAM3	YOR106W	CHS1	P08004	1131 aa		4.13	□□□□□ -1.75
VAM3	YOR106W	YCR100C	P25606	316 aa		4.13	□□□□□ -1.75
VAM3	YOR106W	RFS1	P38234	210 aa	Known RBP	4.13	□□□□□ -1.75
VAM3	YOR106W	YBR225W	P38321	900 aa		4.13	□□□□□ -1.75
VAM3	YOR106W	YGR210C	P42942	411 aa		4.13	□□□□□ -1.75
VAM3	YOR106W	RRT5	P43607	289 aa		4.13	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 226.9 ms