RNA–Protein interactions for RNA: YMR247C

RKR1, Transcript of RING domain E3 ubiquitin ligase, yeast

Gene RKR1, Length 4,689 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RKR1	YMR247C	MAD3	P47074	515 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	PYK2	P52489	506 aa	Known RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	KAP120	Q02932	1032 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	YDL114W	Q07530	308 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	ESA1	Q08649	445 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	PCL8	Q08966	492 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	YLR108C	Q12259	485 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	NBL1	Q3E7Y6	73 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	KOG1	P38873	1557 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	GAL4	P04386	881 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	IMG1	P25626	169 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	NDC1	P32500	655 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	MTR2	P34232	184 aa	Known RBP	0.87	□□□□□ -2.27
RKR1	YMR247C	RPL32	P38061	130 aa	Known RBP	0.87	□□□□□ -2.27
RKR1	YMR247C	ERT1	P38140	529 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	MIX23	P38162	196 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	RRT2	P38332	387 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	FAU1	P40099	211 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	MEP2	P41948	499 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	DLD2	P46681	530 aa	Known RBP	0.87	□□□□□ -2.27
RKR1	YMR247C	PEX25	Q02969	394 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	RRB1	Q04225	511 aa	Known RBP	0.87	□□□□□ -2.27
RKR1	YMR247C	YKU80	Q04437	629 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	VIP1	Q06685	1146 aa	Known RBP	0.87	□□□□□ -2.27
RKR1	YMR247C	DTD1	Q07648	150 aa	Known RBP	0.87	□□□□□ -2.27
RKR1	YMR247C	PSK2	Q08217	1101 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	CIR2	Q08822	631 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	RKM1	Q08961	583 aa	Predicted RBP	0.87	□□□□□ -2.27
RKR1	YMR247C	RIM20	Q12033	661 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	ATG29	Q12092	213 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	YDL007C-A	Q2V2Q0	85 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	SUC2	P00724	532 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	YAR066W	P0CX18	203 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	YHR214W	P0CX19	203 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	SEC62	P21825	274 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	ATP12	P22135	325 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	TKL1	P23254	680 aa	Known RBP	0.87	□□□□□ -2.27
RKR1	YMR247C	KRE2	P27809	442 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	DBF20	P32328	564 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	CYS4	P32582	507 aa	Known RBP	0.87	□□□□□ -2.27
RKR1	YMR247C	TFC4	P33339	1025 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	FLO10	P36170	1169 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	YJL213W	P40896	331 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	IRC6	P43615	237 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	OCA1	P50946	238 aa	Predicted RBP	0.87	□□□□□ -2.27
RKR1	YMR247C	PIL1	P53252	339 aa	Known RBP	0.87	□□□□□ -2.27
RKR1	YMR247C	RPT4	P53549	437 aa	Known RBP	0.87	□□□□□ -2.27
RKR1	YMR247C	ARE2	P53629	642 aa	Known RBP	0.87	□□□□□ -2.27
RKR1	YMR247C	JJJ1	P53863	590 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	RLI1	Q03195	608 aa	Known RBP	0.87	□□□□□ -2.27
RKR1	YMR247C	PFA5	Q03289	374 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	RNH1	Q04740	348 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	YLR345W	Q06137	509 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	HNT3	Q08702	217 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	IML1	P47170	1584 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	RAV1	P47104	1357 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	CDC31	P06704	161 aa	Known RBP	0.87	□□□□□ -2.27
RKR1	YMR247C	RPL20A	P0CX23	172 aa	Known RBP	0.87	□□□□□ -2.27
RKR1	YMR247C	RPL20B	P0CX24	172 aa	Predicted RBP	0.87	□□□□□ -2.27
RKR1	YMR247C	HEM15	P16622	393 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	GFD2	P25370	566 aa	Known RBP	0.87	□□□□□ -2.27
RKR1	YMR247C	PRE2	P30656	287 aa	Known RBP	0.87	□□□□□ -2.27
RKR1	YMR247C	PDR3	P33200	976 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	LTV1	P34078	463 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	STB6	P36085	766 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	AUR1	P36107	401 aa	Predicted RBP	0.87	□□□□□ -2.27
RKR1	YMR247C	ADE17	P38009	592 aa	Known RBP	0.87	□□□□□ -2.27
RKR1	YMR247C	SRO77	P38163	1010 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	BNA4	P38169	460 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	DHH1	P39517	506 aa	Known RBP	0.87	□□□□□ -2.27
RKR1	YMR247C	ERR3	P42222	437 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	HXT14	P42833	540 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	MIC19	P43594	170 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	RTT101	P47050	842 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	COG1	P53079	417 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	CBK1	P53894	756 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	YDR131C	Q03899	556 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	SYO1	Q07395	620 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	LUC7	Q07508	261 aa	Predicted RBP	0.87	□□□□□ -2.27
RKR1	YMR247C	HMS1	Q12398	434 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	STU1	P38198	1513 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	VMR1	P38735	1592 aa		0.87	□□□□□ -2.27
RKR1	YMR247C	GLK1	P17709	500 aa	Known RBP	0.86	□□□□□ -2.27
RKR1	YMR247C	CPR2	P23285	205 aa		0.86	□□□□□ -2.27
RKR1	YMR247C	RPS7A	P26786	190 aa	Known RBP	0.86	□□□□□ -2.27
RKR1	YMR247C	MCM4	P30665	933 aa	Known RBP	0.86	□□□□□ -2.27
RKR1	YMR247C	PTR2	P32901	601 aa		0.86	□□□□□ -2.27
RKR1	YMR247C	ATP3	P38077	311 aa	Known RBP	0.86	□□□□□ -2.27
RKR1	YMR247C	SHE3	P38272	425 aa	Known RBP	0.86	□□□□□ -2.27
RKR1	YMR247C	RFC3	P38629	340 aa		0.86	□□□□□ -2.27
RKR1	YMR247C	MSR1	P38714	643 aa		0.86	□□□□□ -2.27
RKR1	YMR247C	YHR054C	P38780	354 aa		0.86	□□□□□ -2.27
RKR1	YMR247C	SCS3	P53012	380 aa		0.86	□□□□□ -2.27
RKR1	YMR247C	MPS2	P53159	387 aa		0.86	□□□□□ -2.27
RKR1	YMR247C	TAM41	P53230	385 aa		0.86	□□□□□ -2.27
RKR1	YMR247C	ARC35	P53731	342 aa	Known RBP	0.86	□□□□□ -2.27
RKR1	YMR247C	TOF1	P53840	1238 aa		0.86	□□□□□ -2.27
RKR1	YMR247C	YMR010W	Q03687	405 aa		0.86	□□□□□ -2.27
RKR1	YMR247C	HSP31	Q04432	237 aa		0.86	□□□□□ -2.27
RKR1	YMR247C	SNA4	Q07549	140 aa		0.86	□□□□□ -2.27

Retrieved 100 of 5,963 RNA–protein pairs in 17.5 ms