RNA–Protein interactions for RNA: YLR211C

ATG38, Transcript of Homodimeric subunit of autophagy-specific PtdIns-3-kinase complex I, yeast

Gene ATG38, Length 681 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ATG38	YLR211C	SEF1	P34228	1148 aa		3.1	□□□□□ -1.91
ATG38	YLR211C	SWD3	P38123	315 aa		3.1	□□□□□ -1.91
ATG38	YLR211C	FLC2	P39719	783 aa		3.1	□□□□□ -1.91
ATG38	YLR211C	ALG5	P40350	334 aa		3.1	□□□□□ -1.91
ATG38	YLR211C	AVT4	P50944	713 aa		3.1	□□□□□ -1.91
ATG38	YLR211C	RTS3	P53289	263 aa		3.1	□□□□□ -1.91
ATG38	YLR211C	ELP3	Q02908	557 aa	Known RBP	3.1	□□□□□ -1.91
ATG38	YLR211C	MRPL35	Q06678	367 aa		3.1	□□□□□ -1.91
ATG38	YLR211C	COR1	P07256	457 aa		3.09	□□□□□ -1.91
ATG38	YLR211C	HEM15	P16622	393 aa		3.09	□□□□□ -1.91
ATG38	YLR211C	YME1	P32795	747 aa		3.09	□□□□□ -1.91
ATG38	YLR211C	RRT2	P38332	387 aa		3.09	□□□□□ -1.91
ATG38	YLR211C	YMR147W	P40218	223 aa	Known RBP	3.09	□□□□□ -1.91
ATG38	YLR211C	YMR018W	Q04364	514 aa		3.09	□□□□□ -1.91
ATG38	YLR211C	MFB1	Q04922	465 aa		3.09	□□□□□ -1.91
ATG38	YLR211C	TMC1	Q08422	150 aa	Predicted RBP	3.09	□□□□□ -1.91
ATG38	YLR211C	HUA2	Q12134	243 aa		3.09	□□□□□ -1.91
ATG38	YLR211C	ISY1	P21374	235 aa	Predicted RBP	3.08	□□□□□ -1.92
ATG38	YLR211C	PRD1	P25375	712 aa		3.08	□□□□□ -1.92
ATG38	YLR211C	DEG1	P31115	442 aa	Known RBP	3.08	□□□□□ -1.92
ATG38	YLR211C	HXT1	P32465	570 aa		3.08	□□□□□ -1.92
ATG38	YLR211C	PAH1	P32567	862 aa		3.08	□□□□□ -1.92
ATG38	YLR211C	MUM2	P38236	366 aa		3.08	□□□□□ -1.92
ATG38	YLR211C	NDT80	P38830	627 aa		3.08	□□□□□ -1.92
ATG38	YLR211C	MTC6	P38849	526 aa		3.08	□□□□□ -1.92
ATG38	YLR211C	PTH1	P38876	190 aa	Known RBP	3.08	□□□□□ -1.92
ATG38	YLR211C	ELP2	P42935	788 aa		3.08	□□□□□ -1.92
ATG38	YLR211C	VID30	P53076	958 aa		3.08	□□□□□ -1.92
ATG38	YLR211C	SLG1	P54867	378 aa		3.08	□□□□□ -1.92
ATG38	YLR211C	PBA1	Q05778	276 aa		3.08	□□□□□ -1.92
ATG38	YLR211C	THP3	Q12049	470 aa	Known RBP	3.08	□□□□□ -1.92
ATG38	YLR211C	CLN3	P13365	580 aa		3.07	□□□□□ -1.92
ATG38	YLR211C	SSH4	P32343	579 aa		3.07	□□□□□ -1.92
ATG38	YLR211C	MFT1	P33441	392 aa	Known RBP	3.07	□□□□□ -1.92
ATG38	YLR211C	YBL059W	P34224	193 aa		3.07	□□□□□ -1.92
ATG38	YLR211C	FRE2	P36033	711 aa		3.07	□□□□□ -1.92
ATG38	YLR211C	MBB1	P39534	108 aa		3.07	□□□□□ -1.92
ATG38	YLR211C	SYG1	P40528	902 aa		3.07	□□□□□ -1.92
ATG38	YLR211C	TIS11	P47977	285 aa		3.07	□□□□□ -1.92
ATG38	YLR211C	UPF3	P48412	387 aa	Known RBP	3.07	□□□□□ -1.92
ATG38	YLR211C	MRX6	P48564	524 aa		3.07	□□□□□ -1.92
ATG38	YLR211C	BTN2	P53286	410 aa		3.07	□□□□□ -1.92
ATG38	YLR211C	MHR1	Q06630	226 aa		3.07	□□□□□ -1.92
ATG38	YLR211C	RRD2	Q12461	358 aa		3.07	□□□□□ -1.92
ATG38	YLR211C	GLC7	P32598	312 aa	Known RBP	3.06	□□□□□ -1.92
ATG38	YLR211C	WBP1	P33767	430 aa	Known RBP	3.06	□□□□□ -1.92
ATG38	YLR211C	YGR210C	P42942	411 aa		3.06	□□□□□ -1.92
ATG38	YLR211C	HEL2	Q05580	639 aa	Known RBP	3.06	□□□□□ -1.92
ATG38	YLR211C	HRT3	Q12347	344 aa		3.06	□□□□□ -1.92
ATG38	YLR211C	YJR112W-A	Q3E743	109 aa		3.06	□□□□□ -1.92
ATG38	YLR211C	SEM1	O94742	89 aa		3.05	□□□□□ -1.92
ATG38	YLR211C	ADH2	P00331	348 aa	Known RBP	3.05	□□□□□ -1.92
ATG38	YLR211C	GAL80	P04387	435 aa		3.05	□□□□□ -1.92
ATG38	YLR211C	AAC3	P18238	307 aa		3.05	□□□□□ -1.92
ATG38	YLR211C	NDI1	P32340	513 aa		3.05	□□□□□ -1.92
ATG38	YLR211C	SPR1	P32603	445 aa		3.05	□□□□□ -1.92
ATG38	YLR211C	CAF40	P53829	373 aa		3.05	□□□□□ -1.92
ATG38	YLR211C	YDR056C	Q12025	205 aa		3.05	□□□□□ -1.92
ATG38	YLR211C	HSC82	P15108	705 aa	Known RBP	3.04	□□□□□ -1.92
ATG38	YLR211C	CPR4	P25334	318 aa		3.04	□□□□□ -1.92
ATG38	YLR211C	PAP1	P29468	568 aa	Known RBP	3.04	□□□□□ -1.92
ATG38	YLR211C	PAD1	P33751	242 aa	Known RBP RIP-Chip data	3.04	□□□□□ -1.92	not detected
ATG38	YLR211C	ERP2	P39704	215 aa		3.04	□□□□□ -1.92
ATG38	YLR211C	REE1	P40893	198 aa		3.04	□□□□□ -1.92
ATG38	YLR211C	TRS85	P46944	698 aa		3.04	□□□□□ -1.92
ATG38	YLR211C	YLR152C	P54072	576 aa		3.04	□□□□□ -1.92
ATG38	YLR211C	FIN1	Q03898	291 aa		3.04	□□□□□ -1.92
ATG38	YLR211C	VPS38	Q05919	439 aa		3.04	□□□□□ -1.92
ATG38	YLR211C	ESA1	Q08649	445 aa		3.04	□□□□□ -1.92
ATG38	YLR211C	RRG7	Q08774	242 aa	Predicted RBP	3.04	□□□□□ -1.92
ATG38	YLR211C	SOD1	P00445	154 aa	Known RBP	3.03	□□□□□ -1.92
ATG38	YLR211C	HHF1	P02309	103 aa	Known RBP	3.03	□□□□□ -1.92
ATG38	YLR211C	SEC53	P07283	254 aa	Known RBP	3.03	□□□□□ -1.92
ATG38	YLR211C	OLE1	P21147	510 aa	Known RBP	3.03	□□□□□ -1.92
ATG38	YLR211C	NOP16	P40007	231 aa	Known RBP	3.03	□□□□□ -1.92
ATG38	YLR211C	SDT1	P53078	280 aa		3.03	□□□□□ -1.92
ATG38	YLR211C	KTR5	P53966	522 aa	Predicted RBP	3.03	□□□□□ -1.92
ATG38	YLR211C	RRN11	Q04712	507 aa		3.03	□□□□□ -1.92
ATG38	YLR211C	PAL1	Q05518	499 aa	Known RBP	3.03	□□□□□ -1.92
ATG38	YLR211C	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	3.03	□□□□□ -1.92	not detected
ATG38	YLR211C	CTI6	Q08923	506 aa		3.03	□□□□□ -1.92
ATG38	YLR211C	AVL9	Q12500	764 aa		3.03	□□□□□ -1.92
ATG38	YLR211C	RAV1	P47104	1357 aa		3.02	□□□□□ -1.93
ATG38	YLR211C	CDC60	P26637	1090 aa	Known RBP	3.02	□□□□□ -1.93
ATG38	YLR211C	MRE11	P32829	692 aa		3.02	□□□□□ -1.93
ATG38	YLR211C	NAT2	P37293	288 aa		3.02	□□□□□ -1.93
ATG38	YLR211C	CAF130	P53280	1122 aa	Predicted RBP	3.02	□□□□□ -1.93
ATG38	YLR211C	GOR1	P53839	350 aa		3.02	□□□□□ -1.93
ATG38	YLR211C	SVL3	Q03088	825 aa	Known RBP	3.02	□□□□□ -1.93
ATG38	YLR211C	TSR1	Q07381	788 aa	Known RBP	3.02	□□□□□ -1.93
ATG38	YLR211C	RBD2	Q12270	262 aa		3.02	□□□□□ -1.93
ATG38	YLR211C	CBS1	P14066	229 aa		3.01	□□□□□ -1.93
ATG38	YLR211C	SRO77	P38163	1010 aa		3.01	□□□□□ -1.93
ATG38	YLR211C	ISC1	P40015	477 aa	Known RBP	3.01	□□□□□ -1.93
ATG38	YLR211C	VID27	P40157	782 aa		3.01	□□□□□ -1.93
ATG38	YLR211C	YFL067W	P43537	175 aa		3.01	□□□□□ -1.93
ATG38	YLR211C	PET130	P47065	347 aa		3.01	□□□□□ -1.93
ATG38	YLR211C	POP6	P53218	158 aa		3.01	□□□□□ -1.93
ATG38	YLR211C	TOF1	P53840	1238 aa		3.01	□□□□□ -1.93
ATG38	YLR211C	RCN2	Q12044	265 aa		3.01	□□□□□ -1.93

Retrieved 100 of 5,963 RNA–protein pairs in 12.6 ms