RNA–Protein interactions for RNA: YER100W

UBC6, Transcript of Ubiquitin-conjugating enzyme involved in ERAD, yeast

Gene UBC6, Length 753 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC6	YER100W	IMD3	P50095	523 aa	Known RBP	5	□□□□□ -1.61
UBC6	YER100W	SWF1	Q04629	336 aa		5	□□□□□ -1.61
UBC6	YER100W	THP1	Q08231	455 aa		5	□□□□□ -1.61
UBC6	YER100W	YER145C-A	A0A023PYF4	145 aa		4.99	□□□□□ -1.61
UBC6	YER100W	NIP1	P32497	812 aa	Known RBP	4.99	□□□□□ -1.61
UBC6	YER100W	RRP1	P35178	278 aa	Predicted RBP	4.99	□□□□□ -1.61
UBC6	YER100W	OAR1	P35731	278 aa		4.99	□□□□□ -1.61
UBC6	YER100W	TIF4631	P39935	952 aa	Known RBP	4.99	□□□□□ -1.61
UBC6	YER100W	PAC2	P39937	518 aa		4.99	□□□□□ -1.61
UBC6	YER100W	TFG2	P41896	400 aa	Predicted RBP	4.99	□□□□□ -1.61
UBC6	YER100W	EPL1	P43572	832 aa		4.99	□□□□□ -1.61
UBC6	YER100W	SNG1	P46950	547 aa		4.99	□□□□□ -1.61
UBC6	YER100W	SNU56	Q03782	492 aa	Known RBP	4.99	□□□□□ -1.61
UBC6	YER100W	BSP1	Q06604	576 aa		4.99	□□□□□ -1.61
UBC6	YER100W	RTC5	Q12108	567 aa	Known RBP	4.99	□□□□□ -1.61
UBC6	YER100W	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	4.99	□□□□□ -1.61	not detected
UBC6	YER100W	UBX3	Q12229	455 aa		4.99	□□□□□ -1.61
UBC6	YER100W	YDR061W	Q12298	539 aa		4.99	□□□□□ -1.61
UBC6	YER100W	CAR1	P00812	333 aa	Known RBP	4.98	□□□□□ -1.61
UBC6	YER100W	FAA1	P30624	700 aa	Known RBP	4.98	□□□□□ -1.61
UBC6	YER100W	SIN4	P32259	974 aa		4.98	□□□□□ -1.61
UBC6	YER100W	SRB2	P34162	210 aa		4.98	□□□□□ -1.61
UBC6	YER100W	ASC1	P38011	319 aa	Known RBP	4.98	□□□□□ -1.61
UBC6	YER100W	TCM62	P38228	572 aa	Known RBP	4.98	□□□□□ -1.61
UBC6	YER100W	VHC1	P38329	1120 aa		4.98	□□□□□ -1.61
UBC6	YER100W	RFC3	P38629	340 aa		4.98	□□□□□ -1.61
UBC6	YER100W	YER130C	P39959	443 aa		4.98	□□□□□ -1.61
UBC6	YER100W	YJR154W	P47181	346 aa		4.98	□□□□□ -1.61
UBC6	YER100W	COP1	P53622	1201 aa	Known RBP	4.98	□□□□□ -1.61
UBC6	YER100W	YNR068C	P53754	272 aa		4.98	□□□□□ -1.61
UBC6	YER100W	ERV25	P54837	211 aa	Known RBP	4.98	□□□□□ -1.61
UBC6	YER100W	SMA1	Q02651	245 aa		4.98	□□□□□ -1.61
UBC6	YER100W	PML1	Q07930	204 aa	Predicted RBP	4.98	□□□□□ -1.61
UBC6	YER100W	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	4.98	□□□□□ -1.61	not detected
UBC6	YER100W	PEP5	P12868	1029 aa		4.97	□□□□□ -1.61
UBC6	YER100W	SEC63	P14906	663 aa		4.97	□□□□□ -1.61
UBC6	YER100W	ATP10	P18496	279 aa		4.97	□□□□□ -1.61
UBC6	YER100W	NDI1	P32340	513 aa		4.97	□□□□□ -1.61
UBC6	YER100W	SUR1	P33300	382 aa		4.97	□□□□□ -1.61
UBC6	YER100W	EBP2	P36049	427 aa	Known RBP	4.97	□□□□□ -1.61
UBC6	YER100W	DUG2	P38149	878 aa		4.97	□□□□□ -1.61
UBC6	YER100W	BNA4	P38169	460 aa		4.97	□□□□□ -1.61
UBC6	YER100W	MOH1	P38191	138 aa		4.97	□□□□□ -1.61
UBC6	YER100W	FAD1	P38913	306 aa		4.97	□□□□□ -1.61
UBC6	YER100W	PHO90	P39535	881 aa		4.97	□□□□□ -1.61
UBC6	YER100W	UBP8	P50102	471 aa		4.97	□□□□□ -1.61
UBC6	YER100W	DRN1	P53255	507 aa	Known RBP	4.97	□□□□□ -1.61
UBC6	YER100W	GND2	P53319	492 aa		4.97	□□□□□ -1.61
UBC6	YER100W	HST1	P53685	503 aa		4.97	□□□□□ -1.61
UBC6	YER100W	YDL057W	Q07379	328 aa		4.97	□□□□□ -1.61
UBC6	YER100W	DIS3	Q08162	1001 aa	Known RBP	4.97	□□□□□ -1.61
UBC6	YER100W	RUP1	Q12242	671 aa		4.97	□□□□□ -1.61
UBC6	YER100W	RRD2	Q12461	358 aa		4.97	□□□□□ -1.61
UBC6	YER100W	TY1B-A	O13527	1196 aa	Known RBP	4.96	□□□□□ -1.62
UBC6	YER100W	SCEI	P03882	235 aa		4.96	□□□□□ -1.62
UBC6	YER100W	SNF3	P10870	884 aa		4.96	□□□□□ -1.62
UBC6	YER100W	ARO3	P14843	370 aa	Known RBP	4.96	□□□□□ -1.62
UBC6	YER100W	TAL1	P15019	335 aa	Known RBP	4.96	□□□□□ -1.62
UBC6	YER100W	UBA1	P22515	1024 aa	Known RBP	4.96	□□□□□ -1.62
UBC6	YER100W	MSN2	P33748	704 aa		4.96	□□□□□ -1.62
UBC6	YER100W	PCH2	P38126	564 aa		4.96	□□□□□ -1.62
UBC6	YER100W	OLA1	P38219	394 aa	Known RBP	4.96	□□□□□ -1.62
UBC6	YER100W	PFF1	P38244	976 aa		4.96	□□□□□ -1.62
UBC6	YER100W	EFM2	P38347	419 aa		4.96	□□□□□ -1.62
UBC6	YER100W	LAG1	P38703	411 aa		4.96	□□□□□ -1.62
UBC6	YER100W	VPS41	P38959	992 aa		4.96	□□□□□ -1.62
UBC6	YER100W	YDR089W	P38966	869 aa		4.96	□□□□□ -1.62
UBC6	YER100W	YIL089W	P40500	205 aa		4.96	□□□□□ -1.62
UBC6	YER100W	RPS0B	P46654	252 aa	Known RBP	4.96	□□□□□ -1.62
UBC6	YER100W	EFM3	P47163	339 aa		4.96	□□□□□ -1.62
UBC6	YER100W	CUE3	P53137	624 aa	Known RBP	4.96	□□□□□ -1.62
UBC6	YER100W	SHR3	Q02774	210 aa		4.96	□□□□□ -1.62
UBC6	YER100W	ARP10	Q04549	284 aa		4.96	□□□□□ -1.62
UBC6	YER100W	MDM30	Q05930	598 aa		4.96	□□□□□ -1.62
UBC6	YER100W	SPH1	Q06160	661 aa		4.96	□□□□□ -1.62
UBC6	YER100W	POS5	Q06892	414 aa		4.96	□□□□□ -1.62
UBC6	YER100W	NOP6	Q07623	225 aa	Known RBP	4.96	□□□□□ -1.62
UBC6	YER100W	RPC40	P07703	335 aa	Known RBP	4.95	□□□□□ -1.62
UBC6	YER100W	PMR1	P13586	950 aa		4.95	□□□□□ -1.62
UBC6	YER100W	TYR1	P20049	452 aa		4.95	□□□□□ -1.62
UBC6	YER100W	DAL80	P26343	269 aa		4.95	□□□□□ -1.62
UBC6	YER100W	BEM1	P29366	551 aa		4.95	□□□□□ -1.62
UBC6	YER100W	REC114	P32841	428 aa		4.95	□□□□□ -1.62
UBC6	YER100W	KEL1	P38853	1164 aa	Known RBP	4.95	□□□□□ -1.62
UBC6	YER100W	RPA34	P47006	233 aa	Predicted RBP	4.95	□□□□□ -1.62
UBC6	YER100W	ZPR1	P53303	486 aa	Known RBP	4.95	□□□□□ -1.62
UBC6	YER100W	DUG3	P53871	357 aa		4.95	□□□□□ -1.62
UBC6	YER100W	YNL143C	P53908	130 aa		4.95	□□□□□ -1.62
UBC6	YER100W	APM1	Q00776	475 aa	Predicted RBP	4.95	□□□□□ -1.62
UBC6	YER100W	VTC3	Q02725	835 aa		4.95	□□□□□ -1.62
UBC6	YER100W	YDR541C	Q03049	344 aa		4.95	□□□□□ -1.62
UBC6	YER100W	YLR111W	Q12528	110 aa		4.95	□□□□□ -1.62
UBC6	YER100W	SRN2	Q99176	213 aa		4.95	□□□□□ -1.62
UBC6	YER100W	SUC2	P00724	532 aa		4.94	□□□□□ -1.62
UBC6	YER100W	RAD52	P06778	471 aa	Known RBP	4.94	□□□□□ -1.62
UBC6	YER100W	RDS1	P25611	832 aa		4.94	□□□□□ -1.62
UBC6	YER100W	PRP21	P32524	280 aa	Predicted RBP	4.94	□□□□□ -1.62
UBC6	YER100W	RTT105	P40063	208 aa		4.94	□□□□□ -1.62
UBC6	YER100W	OSW5	P40219	148 aa		4.94	□□□□□ -1.62
UBC6	YER100W	ELP2	P42935	788 aa		4.94	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 14.6 ms