RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 RMDN3Q96TC7 470 aa21.07■□□□□ 0.96
CLN3-259ENST00000637551 HTATIP2Q9BUP3 242 aa21.07■□□□□ 0.96
CLN3-259ENST00000637551 ESYT2A0FGR8 921 aa21.06■□□□□ 0.96
CLN3-259ENST00000637551 NKRFO15226 690 aaKnown RBP eCLIP21.06■□□□□ 0.96
CLN3-259ENST00000637551 PRPF3O43395 683 aaKnown RBP21.06■□□□□ 0.96
CLN3-259ENST00000637551 SEC24BO95487 1268 aa21.06■□□□□ 0.96
CLN3-259ENST00000637551 CFBP00751 764 aa21.06■□□□□ 0.96
CLN3-259ENST00000637551 PDE4DQ08499 809 aa21.06■□□□□ 0.96
CLN3-259ENST00000637551 NTRK3Q16288 839 aa21.06■□□□□ 0.96
CLN3-259ENST00000637551 MCTP2Q6DN12 878 aa21.06■□□□□ 0.96
CLN3-259ENST00000637551 CUL5Q93034 780 aa21.06■□□□□ 0.96
CLN3-259ENST00000637551 TSEN34Q9BSV6 310 aaKnown RBP21.06■□□□□ 0.96
CLN3-259ENST00000637551 UPF3AQ9H1J1 476 aaKnown RBP21.06■□□□□ 0.96
CLN3-259ENST00000637551 BARHL2Q9NY43 387 aa21.06■□□□□ 0.96
CLN3-259ENST00000637551 CDKL5O76039 1030 aa21.05■□□□□ 0.96
CLN3-259ENST00000637551 COL6A1P12109 1028 aa21.05■□□□□ 0.96
CLN3-259ENST00000637551 TAL1P17542 331 aaPredicted RBP21.05■□□□□ 0.96
CLN3-259ENST00000637551 MNX1P50219 401 aaPredicted RBP21.05■□□□□ 0.96
CLN3-259ENST00000637551 PFKFB3Q16875 520 aaPredicted RBP21.05■□□□□ 0.96
CLN3-259ENST00000637551 CCDC144BQ3MJ40 725 aa21.05■□□□□ 0.96
CLN3-259ENST00000637551 RNF180Q86T96 592 aa21.05■□□□□ 0.96
CLN3-259ENST00000637551 SCFD2Q8WU76 684 aa21.05■□□□□ 0.96
CLN3-259ENST00000637551 SPC25Q9HBM1 224 aa21.05■□□□□ 0.96
CLN3-259ENST00000637551 PXMP2Q9NR77 195 aa21.05■□□□□ 0.96
CLN3-259ENST00000637551 ZHX1Q9UKY1 873 aaPredicted RBP21.05■□□□□ 0.96
CLN3-259ENST00000637551 ADD1P35611 737 aaKnown RBP21.04■□□□□ 0.96
CLN3-259ENST00000637551 STXBP2Q15833 593 aa21.04■□□□□ 0.96
CLN3-259ENST00000637551 KCNV1Q6PIU1 500 aa21.04■□□□□ 0.96
CLN3-259ENST00000637551 TRIM22Q8IYM9 498 aa21.04■□□□□ 0.96
CLN3-259ENST00000637551 PSTPIP2Q9H939 334 aa21.04■□□□□ 0.96
CLN3-259ENST00000637551 XPNPEP3Q9NQH7 507 aa21.04■□□□□ 0.96
CLN3-259ENST00000637551 COL20A1Q9P218 1284 aa21.04■□□□□ 0.96
CLN3-259ENST00000637551 GTF3C3Q9Y5Q9 886 aa21.04■□□□□ 0.96
CLN3-259ENST00000637551 KBTBD13C9JR72 458 aa21.03■□□□□ 0.96
CLN3-259ENST00000637551 EIF3JO75822 258 aaKnown RBP21.03■□□□□ 0.96
CLN3-259ENST00000637551 SCG2P13521 617 aa21.03■□□□□ 0.96
CLN3-259ENST00000637551 GJA9P57773 515 aa21.03■□□□□ 0.96
CLN3-259ENST00000637551 AKAP17AQ02040 695 aaKnown RBP21.03■□□□□ 0.96
CLN3-259ENST00000637551 DUSP28Q4G0W2 176 aa21.03■□□□□ 0.96
CLN3-259ENST00000637551 PRAMEF19Q5SWL8 479 aa21.03■□□□□ 0.96
CLN3-259ENST00000637551 ARHGEF16Q5VV41 709 aa21.03■□□□□ 0.96
CLN3-259ENST00000637551 TAPT1Q6NXT6 567 aa21.03■□□□□ 0.96
CLN3-259ENST00000637551 PDCD2LQ9BRP1 358 aa21.03■□□□□ 0.96
CLN3-259ENST00000637551 C22orf23Q9BZE7 217 aa21.03■□□□□ 0.96
CLN3-259ENST00000637551 SH3GLB2Q9NR46 395 aa21.03■□□□□ 0.96
CLN3-259ENST00000637551 NAP1L2Q9ULW6 460 aaPredicted RBP21.03■□□□□ 0.96
CLN3-259ENST00000637551 V9GY48 417 aaPredicted RBP21.03■□□□□ 0.96
CLN3-259ENST00000637551 A0A1W2PPC1 479 aa21.02■□□□□ 0.96
CLN3-259ENST00000637551 MOXD2PA6NHM9 499 aa21.02■□□□□ 0.96
CLN3-259ENST00000637551 MEIS2O14770 477 aa21.02■□□□□ 0.96
CLN3-259ENST00000637551 CPLX1O14810 134 aa21.02■□□□□ 0.96
CLN3-259ENST00000637551 PFKFB2O60825 505 aa21.02■□□□□ 0.96
CLN3-259ENST00000637551 ADAMTS4O75173 837 aa21.02■□□□□ 0.96
CLN3-259ENST00000637551 FOSP01100 380 aaPredicted RBP21.02■□□□□ 0.96
CLN3-259ENST00000637551 TNFAIP2Q03169 654 aa21.02■□□□□ 0.96
CLN3-259ENST00000637551 C1orf53Q5VUE5 145 aa21.02■□□□□ 0.96
CLN3-259ENST00000637551 HEATR3Q7Z4Q2 680 aa21.02■□□□□ 0.96
CLN3-259ENST00000637551 RAB11FIP4Q86YS3 637 aa21.02■□□□□ 0.96
CLN3-259ENST00000637551 CMTR1Q8N1G2 835 aaKnown RBP21.02■□□□□ 0.96
CLN3-259ENST00000637551 PCSK9Q8NBP7 692 aaKnown RBP21.02■□□□□ 0.96
CLN3-259ENST00000637551 CCDC148Q8NFR7 591 aa21.02■□□□□ 0.96
CLN3-259ENST00000637551 TBC1D5Q92609 795 aa21.02■□□□□ 0.96
CLN3-259ENST00000637551 TAAR1Q96RJ0 339 aa21.02■□□□□ 0.96
CLN3-259ENST00000637551 SEZ6LQ9BYH1 1024 aa21.02■□□□□ 0.96
CLN3-259ENST00000637551 EHMT1Q9H9B1 1298 aa21.02■□□□□ 0.96
CLN3-259ENST00000637551 RIC8AQ9NPQ8 531 aa21.02■□□□□ 0.96
CLN3-259ENST00000637551 GNEQ9Y223 722 aaKnown RBP21.02■□□□□ 0.96
CLN3-259ENST00000637551 STK36Q9NRP7 1315 aa21.02■□□□□ 0.95
CLN3-259ENST00000637551 SOX1O00570 391 aaPredicted RBP21.01■□□□□ 0.95
CLN3-259ENST00000637551 NR3C2P08235 984 aa21.01■□□□□ 0.95
CLN3-259ENST00000637551 TGFB3P10600 412 aa21.01■□□□□ 0.95
CLN3-259ENST00000637551 NEK4P51957 841 aa21.01■□□□□ 0.95
CLN3-259ENST00000637551 AP3B2Q13367 1082 aa21.01■□□□□ 0.95
CLN3-259ENST00000637551 LRRC41Q15345 812 aa21.01■□□□□ 0.95
CLN3-259ENST00000637551 WWC2Q6AWC2 1192 aa21.01■□□□□ 0.95
CLN3-259ENST00000637551 VSIG10LQ86VR7 867 aa21.01■□□□□ 0.95
CLN3-259ENST00000637551 CCDC82Q8N4S0 544 aa21.01■□□□□ 0.95
CLN3-259ENST00000637551 KLHDC9Q8NEP7 349 aa21.01■□□□□ 0.95
CLN3-259ENST00000637551 SMARCC2Q8TAQ2 1214 aa21.01■□□□□ 0.95
CLN3-259ENST00000637551 C11orf49Q9H6J7 331 aa21.01■□□□□ 0.95
CLN3-259ENST00000637551 PHF24Q9UPV7 400 aa21.01■□□□□ 0.95
CLN3-259ENST00000637551 NR2E3Q9Y5X4 410 aa21.01■□□□□ 0.95
CLN3-259ENST00000637551 SYNRGQ9UMZ2 1314 aa21.01■□□□□ 0.95
CLN3-259ENST00000637551 STXBP3O00186 592 aa21■□□□□ 0.95
CLN3-259ENST00000637551 CCND2P30279 289 aa21■□□□□ 0.95
CLN3-259ENST00000637551 AK2P54819 239 aa21■□□□□ 0.95
CLN3-259ENST00000637551 NAPAP54920 295 aa21■□□□□ 0.95
CLN3-259ENST00000637551 TTLL4Q14679 1199 aa21■□□□□ 0.95
CLN3-259ENST00000637551 PGM5Q15124 567 aa21■□□□□ 0.95
CLN3-259ENST00000637551 FBXO16Q8IX29 292 aaPredicted RBP21■□□□□ 0.95
CLN3-259ENST00000637551 PAWRQ96IZ0 340 aaKnown RBP21■□□□□ 0.95
CLN3-259ENST00000637551 ZMYND12Q9H0C1 365 aa21■□□□□ 0.95
CLN3-259ENST00000637551 SLKQ9H2G2 1235 aaPredicted RBP21■□□□□ 0.95
CLN3-259ENST00000637551 DEXIO95424 95 aa20.99■□□□□ 0.95
CLN3-259ENST00000637551 GNA11P29992 359 aa20.99■□□□□ 0.95
CLN3-259ENST00000637551 RABEP1Q15276 862 aa20.99■□□□□ 0.95
CLN3-259ENST00000637551 GNPTABQ3T906 1256 aa20.99■□□□□ 0.95
CLN3-259ENST00000637551 PCNX4Q63HM2 1172 aa20.99■□□□□ 0.95
CLN3-259ENST00000637551 BICD2Q8TD16 824 aa20.99■□□□□ 0.95
CLN3-259ENST00000637551 PURBQ96QR8 312 aaKnown RBP20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms