RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 ANKRD40Q6AI12 368 aa12.15□□□□□ -0.46
CLN3-244ENST00000636147 TRIM68Q6AZZ1 485 aa12.15□□□□□ -0.46
CLN3-244ENST00000636147 FAM217BQ9NTX9 383 aaPredicted RBP12.15□□□□□ -0.46
CLN3-244ENST00000636147 NCAPD2Q15021 1401 aa12.14□□□□□ -0.47
CLN3-244ENST00000636147 ANKRD62A6NC57 917 aa12.14□□□□□ -0.47
CLN3-244ENST00000636147 SMCO2A6NFE2 343 aa12.14□□□□□ -0.47
CLN3-244ENST00000636147 RGS16O15492 202 aaPredicted RBP12.14□□□□□ -0.47
CLN3-244ENST00000636147 OR52Z1P0C646 297 aa12.14□□□□□ -0.47
CLN3-244ENST00000636147 SARNPP82979 210 aaKnown RBP12.14□□□□□ -0.47
CLN3-244ENST00000636147 DDX47Q9H0S4 455 aaKnown RBP12.14□□□□□ -0.47
CLN3-244ENST00000636147 HAUS2Q9NVX0 235 aa12.14□□□□□ -0.47
CLN3-244ENST00000636147 CEP83Q9Y592 693 aa12.14□□□□□ -0.47
CLN3-244ENST00000636147 ADCY1Q08828 1119 aa12.14□□□□□ -0.47
CLN3-244ENST00000636147 EP400NLQ6ZTU2 488 aa12.14□□□□□ -0.47
CLN3-244ENST00000636147 DDX42Q86XP3 938 aaKnown RBP eCLIP12.14□□□□□ -0.47
CLN3-244ENST00000636147 U2AF1L4Q8WU68 220 aaKnown RBP12.14□□□□□ -0.47
CLN3-244ENST00000636147 GOLPH3Q9H4A6 298 aa12.14□□□□□ -0.47
CLN3-244ENST00000636147 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.14□□□□□ -0.47
CLN3-244ENST00000636147 RIMS1Q86UR5 1692 aaKnown RBP12.14□□□□□ -0.47
CLN3-244ENST00000636147 PCDH11XQ9BZA7 1347 aa12.14□□□□□ -0.47
CLN3-244ENST00000636147 PCDH11YQ9BZA8 1340 aa12.14□□□□□ -0.47
CLN3-244ENST00000636147 MAGOHP61326 146 aaKnown RBP12.14□□□□□ -0.47
CLN3-244ENST00000636147 ATP2C1P98194 919 aaPredicted RBP12.14□□□□□ -0.47
CLN3-244ENST00000636147 ADSSL1Q8N142 457 aa12.14□□□□□ -0.47
CLN3-244ENST00000636147 MAGOHBQ96A72 148 aaKnown RBP12.14□□□□□ -0.47
CLN3-244ENST00000636147 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.14□□□□□ -0.476e-9■■■■■ 134.6
CLN3-244ENST00000636147 MROH5Q6ZUA9 1318 aa12.13□□□□□ -0.47
CLN3-244ENST00000636147 A0A1W2PRG0 241 aa12.13□□□□□ -0.47
CLN3-244ENST00000636147 CETN3O15182 167 aa12.13□□□□□ -0.47
CLN3-244ENST00000636147 BRD2P25440 801 aaKnown RBP12.13□□□□□ -0.47
CLN3-244ENST00000636147 PPP1R2P41236 205 aa12.13□□□□□ -0.47
CLN3-244ENST00000636147 CALCRLQ16602 461 aa12.13□□□□□ -0.47
CLN3-244ENST00000636147 MAN2A1Q16706 1144 aa12.13□□□□□ -0.47
CLN3-244ENST00000636147 NLRP10Q86W26 655 aa12.13□□□□□ -0.47
CLN3-244ENST00000636147 TEX11Q8IYF3 940 aa12.13□□□□□ -0.47
CLN3-244ENST00000636147 CCDC197Q8NCU1 140 aa12.13□□□□□ -0.47
CLN3-244ENST00000636147 STAG1Q8WVM7 1258 aa12.13□□□□□ -0.47
CLN3-244ENST00000636147 MRRFQ96E11 262 aaKnown RBP12.13□□□□□ -0.47
CLN3-244ENST00000636147 ATP6V1G3Q96LB4 118 aa12.13□□□□□ -0.47
CLN3-244ENST00000636147 EPN3Q9H201 632 aa12.13□□□□□ -0.47
CLN3-244ENST00000636147 GMNCA6NCL1 334 aa12.13□□□□□ -0.47
CLN3-244ENST00000636147 HMGB1P1B2RPK0 211 aaPredicted RBP12.13□□□□□ -0.47
CLN3-244ENST00000636147 PCK1P35558 622 aa12.13□□□□□ -0.47
CLN3-244ENST00000636147 TRAPPC10P48553 1259 aa12.13□□□□□ -0.47
CLN3-244ENST00000636147 LACTBP83111 547 aaPredicted RBP12.13□□□□□ -0.47
CLN3-244ENST00000636147 STK4Q13043 487 aa12.13□□□□□ -0.47
CLN3-244ENST00000636147 VWA3BQ502W6 1294 aa12.13□□□□□ -0.47
CLN3-244ENST00000636147 ACSBG1Q96GR2 724 aa12.13□□□□□ -0.47
CLN3-244ENST00000636147 YY1AP1Q9H869 796 aa12.13□□□□□ -0.47
CLN3-244ENST00000636147 GGT7Q9UJ14 662 aa12.13□□□□□ -0.47
CLN3-244ENST00000636147 HEG1Q9ULI3 1381 aa12.13□□□□□ -0.47
CLN3-244ENST00000636147 SLC8A1P32418 973 aa12.13□□□□□ -0.47
CLN3-244ENST00000636147 MDH1P40925 334 aaKnown RBP12.13□□□□□ -0.47
CLN3-244ENST00000636147 PMS1P54277 932 aaKnown RBP12.13□□□□□ -0.47
CLN3-244ENST00000636147 MYO1EQ12965 1108 aa12.13□□□□□ -0.47
CLN3-244ENST00000636147 ZKSCAN8Q15776 578 aaPredicted RBP12.13□□□□□ -0.47
CLN3-244ENST00000636147 CCDC6Q16204 474 aa12.13□□□□□ -0.47
CLN3-244ENST00000636147 DENND2CQ68D51 928 aa12.13□□□□□ -0.47
CLN3-244ENST00000636147 TMTC3Q6ZXV5 915 aa12.13□□□□□ -0.47
CLN3-244ENST00000636147 FMNL3Q8IVF7 1028 aa12.13□□□□□ -0.47
CLN3-244ENST00000636147 MYOCDQ8IZQ8 938 aa12.13□□□□□ -0.47
CLN3-244ENST00000636147 THOC1Q96FV9 657 aaKnown RBP12.13□□□□□ -0.47
CLN3-244ENST00000636147 LRRC27Q9C0I9 530 aa12.13□□□□□ -0.47
CLN3-244ENST00000636147 ZNF287Q9HBT7 754 aa12.13□□□□□ -0.47
CLN3-244ENST00000636147 RASAL2Q9UJF2 1139 aa12.13□□□□□ -0.47
CLN3-244ENST00000636147 PTPRUQ92729 1446 aa12.12□□□□□ -0.47
CLN3-244ENST00000636147 A0A1W2PQC6 194 aa12.12□□□□□ -0.47
CLN3-244ENST00000636147 PHF20L1A8MW92 1017 aa12.12□□□□□ -0.47
CLN3-244ENST00000636147 PLTPP55058 493 aa12.12□□□□□ -0.47
CLN3-244ENST00000636147 MTMR3Q13615 1198 aa12.12□□□□□ -0.47
CLN3-244ENST00000636147 HOOK3Q86VS8 718 aa12.12□□□□□ -0.47
CLN3-244ENST00000636147 TSEN2Q8NCE0 465 aaKnown RBP12.12□□□□□ -0.47
CLN3-244ENST00000636147 MED15Q96RN5 788 aa12.12□□□□□ -0.47
CLN3-244ENST00000636147 ELAC2Q9BQ52 826 aaKnown RBP12.12□□□□□ -0.47
CLN3-244ENST00000636147 GPCPD1Q9NPB8 672 aa12.12□□□□□ -0.47
CLN3-244ENST00000636147 MTRF1LQ9UGC7 380 aaKnown RBP12.12□□□□□ -0.47
CLN3-244ENST00000636147 GRIPAP1Q4V328 841 aa12.12□□□□□ -0.47
CLN3-244ENST00000636147 PAPD7Q5XG87 772 aaKnown RBP12.12□□□□□ -0.47
CLN3-244ENST00000636147 WHAMMQ8TF30 809 aa12.12□□□□□ -0.47
CLN3-244ENST00000636147 PPP1R12CQ9BZL4 782 aa12.12□□□□□ -0.47
CLN3-244ENST00000636147 INTS9Q9NV88 658 aaKnown RBP12.12□□□□□ -0.47
CLN3-244ENST00000636147 IFT172Q9UG01 1749 aa12.12□□□□□ -0.47
CLN3-244ENST00000636147 MYCNP04198 464 aaPredicted RBP12.12□□□□□ -0.47
CLN3-244ENST00000636147 SRGNP10124 158 aa12.12□□□□□ -0.47
CLN3-244ENST00000636147 ELF1P32519 619 aa12.12□□□□□ -0.47
CLN3-244ENST00000636147 HSPA2P54652 639 aa12.12□□□□□ -0.47
CLN3-244ENST00000636147 PLS1Q14651 629 aa12.12□□□□□ -0.47
CLN3-244ENST00000636147 TXNRD1Q16881 649 aa12.12□□□□□ -0.47
CLN3-244ENST00000636147 CCDC65Q8IXS2 484 aa12.12□□□□□ -0.47
CLN3-244ENST00000636147 ZNF526Q8TF50 670 aaPredicted RBP12.12□□□□□ -0.47
CLN3-244ENST00000636147 TCEAL9Q9UHQ7 104 aa12.12□□□□□ -0.47
CLN3-244ENST00000636147 PCDHB13Q9Y5F0 798 aa12.12□□□□□ -0.47
CLN3-244ENST00000636147 RCCD1A6NED2 376 aa12.11□□□□□ -0.47
CLN3-244ENST00000636147 KLRF2D3W0D1 207 aa12.11□□□□□ -0.47
CLN3-244ENST00000636147 CYP2D6P10635 497 aa12.11□□□□□ -0.47
CLN3-244ENST00000636147 PARP9Q8IXQ6 854 aa12.11□□□□□ -0.47
CLN3-244ENST00000636147 REXO1Q8N1G1 1221 aaKnown RBP12.11□□□□□ -0.47
CLN3-244ENST00000636147 SRBD1Q8N5C6 995 aaKnown RBP12.11□□□□□ -0.47
CLN3-244ENST00000636147 PCDHA4Q9UN74 947 aa12.11□□□□□ -0.47
CLN3-244ENST00000636147 ZBTB1Q9Y2K1 713 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms