RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 RAB30Q15771 203 aa21.53■■□□□ 1.04
CLN3-241ENST00000635861 USH1GQ495M9 461 aa21.53■■□□□ 1.04
CLN3-241ENST00000635861 UBA5Q9GZZ9 404 aa21.53■■□□□ 1.04
CLN3-241ENST00000635861 SCN5AQ14524 2016 aa21.53■■□□□ 1.04
CLN3-241ENST00000635861 PARP1P09874 1014 aaKnown RBP21.52■■□□□ 1.04
CLN3-241ENST00000635861 ACRP10323 421 aa21.52■■□□□ 1.04
CLN3-241ENST00000635861 PTGS1P23219 599 aa21.52■■□□□ 1.04
CLN3-241ENST00000635861 PTPN11Q06124 597 aaPredicted RBP21.52■■□□□ 1.04
CLN3-241ENST00000635861 TTLL4Q14679 1199 aa21.52■■□□□ 1.04
CLN3-241ENST00000635861 ADGRF4Q8IZF3 695 aa21.52■■□□□ 1.04
CLN3-241ENST00000635861 IWS1Q96ST2 819 aa21.52■■□□□ 1.04
CLN3-241ENST00000635861 UBAC1Q9BSL1 405 aa21.52■■□□□ 1.04
CLN3-241ENST00000635861 PBX4Q9BYU1 374 aa21.52■■□□□ 1.04
CLN3-241ENST00000635861 TRPV6Q9H1D0 765 aa21.52■■□□□ 1.04
CLN3-241ENST00000635861 GTF3C3Q9Y5Q9 886 aa21.52■■□□□ 1.04
CLN3-241ENST00000635861 NFRKBQ6P4R8 1299 aa21.51■■□□□ 1.03
CLN3-241ENST00000635861 NSUN6Q8TEA1 469 aaKnown RBP21.51■■□□□ 1.03
CLN3-241ENST00000635861 WNT8AQ9H1J5 351 aa21.51■■□□□ 1.03
CLN3-241ENST00000635861 MRPL11Q9Y3B7 192 aaKnown RBP21.51■■□□□ 1.03
CLN3-241ENST00000635861 MYL3P08590 195 aa21.5■■□□□ 1.03
CLN3-241ENST00000635861 TXNP10599 105 aaKnown RBP21.5■■□□□ 1.03
CLN3-241ENST00000635861 GRIN2CQ14957 1233 aa21.5■■□□□ 1.03
CLN3-241ENST00000635861 CHD7Q9P2D1 2997 aa21.5■■□□□ 1.03
CLN3-241ENST00000635861 MSRAQ9UJ68 235 aa21.5■■□□□ 1.03
CLN3-241ENST00000635861 UMODL1Q5DID0 1318 aa21.5■■□□□ 1.03
CLN3-241ENST00000635861 TRANK1O15050 2925 aa21.5■■□□□ 1.03
CLN3-241ENST00000635861 VCANP13611 3396 aa21.49■■□□□ 1.03
CLN3-241ENST00000635861 IFIT1BQ5T764 474 aaKnown RBP21.49■■□□□ 1.03
CLN3-241ENST00000635861 FBXO11Q86XK2 927 aa21.49■■□□□ 1.03
CLN3-241ENST00000635861 MAP3K20Q9NYL2 800 aaKnown RBP21.49■■□□□ 1.03
CLN3-241ENST00000635861 RFC2P35250 354 aa21.48■■□□□ 1.03
CLN3-241ENST00000635861 CCL23P55773 120 aa21.48■■□□□ 1.03
CLN3-241ENST00000635861 QRICH1Q2TAL8 776 aa21.48■■□□□ 1.03
CLN3-241ENST00000635861 SAMD3Q8N6K7 520 aa21.48■■□□□ 1.03
CLN3-241ENST00000635861 SYTL5Q8TDW5 730 aaPredicted RBP21.48■■□□□ 1.03
CLN3-241ENST00000635861 RUFY2Q8WXA3 655 aa21.48■■□□□ 1.03
CLN3-241ENST00000635861 GAS2L1Q99501 681 aaPredicted RBP21.48■■□□□ 1.03
CLN3-241ENST00000635861 COL25A1Q9BXS0 654 aaPredicted RBP21.48■■□□□ 1.03
CLN3-241ENST00000635861 CPVLQ9H3G5 476 aa21.48■■□□□ 1.03
CLN3-241ENST00000635861 PITPNM1O00562 1244 aa21.47■■□□□ 1.03
CLN3-241ENST00000635861 DHX16O60231 1041 aaKnown RBP21.47■■□□□ 1.03
CLN3-241ENST00000635861 GHRHRQ02643 423 aa21.47■■□□□ 1.03
CLN3-241ENST00000635861 TRDNQ13061 729 aa21.47■■□□□ 1.03
CLN3-241ENST00000635861 TRAF1Q13077 416 aa21.47■■□□□ 1.03
CLN3-241ENST00000635861 STXBP2Q15833 593 aa21.47■■□□□ 1.03
CLN3-241ENST00000635861 TTC22Q5TAA0 569 aa21.47■■□□□ 1.03
CLN3-241ENST00000635861 CCDC62Q6P9F0 684 aa21.47■■□□□ 1.03
CLN3-241ENST00000635861 JMJD4Q9H9V9 463 aa21.47■■□□□ 1.03
CLN3-241ENST00000635861 TRMT13Q9NUP7 481 aaKnown RBP21.47■■□□□ 1.03
CLN3-241ENST00000635861 BAZ2BQ9UIF8 2168 aaKnown RBP21.47■■□□□ 1.03
CLN3-241ENST00000635861 SEC23AQ15436 765 aa21.46■■□□□ 1.03
CLN3-241ENST00000635861 NBPF20Q3BBV1 942 aa21.46■■□□□ 1.03
CLN3-241ENST00000635861 RMDN3Q96TC7 470 aa21.46■■□□□ 1.03
CLN3-241ENST00000635861 AMNQ9BXJ7 453 aa21.46■■□□□ 1.03
CLN3-241ENST00000635861 CXXC1Q9P0U4 656 aaPredicted RBP21.46■■□□□ 1.03
CLN3-241ENST00000635861 GRXCR1A8MXD5 290 aa21.46■■□□□ 1.03
CLN3-241ENST00000635861 GH1P01241 217 aa21.46■■□□□ 1.03
CLN3-241ENST00000635861 PBX2P40425 430 aa21.46■■□□□ 1.03
CLN3-241ENST00000635861 OTOP2Q7RTS6 562 aa21.46■■□□□ 1.03
CLN3-241ENST00000635861 COPS5Q92905 334 aa21.46■■□□□ 1.03
CLN3-241ENST00000635861 TAAR1Q96RJ0 339 aa21.46■■□□□ 1.03
CLN3-241ENST00000635861 SLC4A7Q9Y6M7 1214 aa21.46■■□□□ 1.03
CLN3-241ENST00000635861 EIF3JO75822 258 aaKnown RBP21.45■■□□□ 1.02
CLN3-241ENST00000635861 ARIH2O95376 493 aa21.45■■□□□ 1.02
CLN3-241ENST00000635861 BFSP2Q13515 415 aa21.45■■□□□ 1.02
CLN3-241ENST00000635861 FAM47CQ5HY64 1035 aa21.45■■□□□ 1.02
CLN3-241ENST00000635861 ARHGEF16Q5VV41 709 aa21.45■■□□□ 1.02
CLN3-241ENST00000635861 SESTD1Q86VW0 696 aa21.45■■□□□ 1.02
CLN3-241ENST00000635861 TET1Q8NFU7 2136 aa21.45■■□□□ 1.02
CLN3-241ENST00000635861 TBC1D5Q92609 795 aa21.45■■□□□ 1.02
CLN3-241ENST00000635861 EMID1Q96A84 441 aaPredicted RBP21.45■■□□□ 1.02
CLN3-241ENST00000635861 MTMR8Q96EF0 704 aa21.45■■□□□ 1.02
CLN3-241ENST00000635861 SLC28A3Q9HAS3 691 aa21.45■■□□□ 1.02
CLN3-241ENST00000635861 U3KPZ7 1027 aaPredicted RBP21.45■■□□□ 1.02
CLN3-241ENST00000635861 KLRF2D3W0D1 207 aa21.44■■□□□ 1.02
CLN3-241ENST00000635861 CYP2C9P11712 490 aa21.44■■□□□ 1.02
CLN3-241ENST00000635861 ACTN1P12814 892 aa21.44■■□□□ 1.02
CLN3-241ENST00000635861 GSPT1P15170 499 aaKnown RBP21.44■■□□□ 1.02
CLN3-241ENST00000635861 HSD17B4P51659 736 aa21.44■■□□□ 1.02
CLN3-241ENST00000635861 SYMPKQ92797 1274 aaKnown RBP21.44■■□□□ 1.02
CLN3-241ENST00000635861 SCLYQ96I15 445 aa21.44■■□□□ 1.02
CLN3-241ENST00000635861 IL25Q9H293 177 aa21.44■■□□□ 1.02
CLN3-241ENST00000635861 VAT1LQ9HCJ6 419 aa21.44■■□□□ 1.02
CLN3-241ENST00000635861 COL20A1Q9P218 1284 aa21.44■■□□□ 1.02
CLN3-241ENST00000635861 TTC28Q96AY4 2481 aa21.43■■□□□ 1.02
CLN3-241ENST00000635861 ZBTB5O15062 677 aa21.43■■□□□ 1.02
CLN3-241ENST00000635861 MMP3P08254 477 aa21.43■■□□□ 1.02
CLN3-241ENST00000635861 CASTP20810 708 aaKnown RBP21.43■■□□□ 1.02
CLN3-241ENST00000635861 PDE4AP27815 886 aa21.43■■□□□ 1.02
CLN3-241ENST00000635861 SEPT14Q6ZU15 432 aa21.43■■□□□ 1.02
CLN3-241ENST00000635861 CCDC155Q8N6L0 562 aa21.43■■□□□ 1.02
CLN3-241ENST00000635861 RETREG2Q8NC44 543 aa21.43■■□□□ 1.02
CLN3-241ENST00000635861 PXMP2Q9NR77 195 aa21.43■■□□□ 1.02
CLN3-241ENST00000635861 MAD2L2Q9UI95 211 aa21.43■■□□□ 1.02
CLN3-241ENST00000635861 NOD1Q9Y239 953 aa21.43■■□□□ 1.02
CLN3-241ENST00000635861 PCDHA11Q9Y5I1 949 aa21.43■■□□□ 1.02
CLN3-241ENST00000635861 SPTBN5Q9NRC6 3674 aaKnown RBP21.43■■□□□ 1.02
CLN3-241ENST00000635861 ERICH2A1L162 156 aa21.42■■□□□ 1.02
CLN3-241ENST00000635861 PALM3A6NDB9 673 aaPredicted RBP21.42■■□□□ 1.02
CLN3-241ENST00000635861 CFBP00751 764 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms