RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 CXorf38Q8TB03 319 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 DONSONQ9NYP3 566 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 ANAPC5Q9UJX4 755 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 CDC42BPAQ5VT25 1732 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 INHBAP08476 426 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 PCP11498 1178 aaKnown RBP9.69□□□□□ -0.86
VCL-206ENST00000623461 KRT3P12035 628 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 MSH2P43246 934 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 FMR1NBQ8N0W7 255 aaPredicted RBP9.69□□□□□ -0.86
VCL-206ENST00000623461 POC1B-GALNT4F8VUJ3 575 aa9.68□□□□□ -0.86
VCL-206ENST00000623461 HOXC9P31274 260 aa9.68□□□□□ -0.86
VCL-206ENST00000623461 MDH1P40925 334 aaKnown RBP9.68□□□□□ -0.86
VCL-206ENST00000623461 RCN2Q14257 317 aa9.68□□□□□ -0.86
VCL-206ENST00000623461 SDCCAG3Q96C92 435 aa9.68□□□□□ -0.86
VCL-206ENST00000623461 ATP10BO94823 1461 aa9.68□□□□□ -0.86
VCL-206ENST00000623461 APOEP02649 317 aa9.68□□□□□ -0.86
VCL-206ENST00000623461 GARSP41250 739 aaKnown RBP9.68□□□□□ -0.86
VCL-206ENST00000623461 SPARCL1Q14515 664 aa9.68□□□□□ -0.86
VCL-206ENST00000623461 KRT31Q15323 416 aa9.68□□□□□ -0.86
VCL-206ENST00000623461 PDHA1P08559 390 aa9.68□□□□□ -0.86
VCL-206ENST00000623461 CCND1P24385 295 aa9.68□□□□□ -0.86
VCL-206ENST00000623461 TMED2Q15363 201 aa9.68□□□□□ -0.86
VCL-206ENST00000623461 ADAT2Q7Z6V5 191 aaKnown RBP9.68□□□□□ -0.86
VCL-206ENST00000623461 SIRT2Q8IXJ6 389 aa9.68□□□□□ -0.86
VCL-206ENST00000623461 TRIML2Q8N7C3 387 aa9.68□□□□□ -0.86
VCL-206ENST00000623461 SYT2Q8N9I0 419 aaPredicted RBP9.68□□□□□ -0.86
VCL-206ENST00000623461 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.68□□□□□ -0.86
VCL-206ENST00000623461 YTHDC2Q9H6S0 1430 aaKnown RBP9.68□□□□□ -0.86
VCL-206ENST00000623461 DKC1O60832 514 aaKnown RBP eCLIP9.68□□□□□ -0.86
VCL-206ENST00000623461 ZAP70P43403 619 aa9.68□□□□□ -0.86
VCL-206ENST00000623461 ADAM9Q13443 819 aa9.68□□□□□ -0.86
VCL-206ENST00000623461 NBPF20Q3BBV1 942 aa9.68□□□□□ -0.86
VCL-206ENST00000623461 LRIG3Q6UXM1 1119 aa9.68□□□□□ -0.86
VCL-206ENST00000623461 REXO1Q8N1G1 1221 aaKnown RBP9.68□□□□□ -0.86
VCL-206ENST00000623461 LPIN2Q92539 896 aa9.68□□□□□ -0.86
VCL-206ENST00000623461 DCAF5Q96JK2 942 aa9.68□□□□□ -0.86
VCL-206ENST00000623461 RNF26Q9BY78 433 aaPredicted RBP9.68□□□□□ -0.86
VCL-206ENST00000623461 ALDH8A1Q9H2A2 487 aaPredicted RBP9.68□□□□□ -0.86
VCL-206ENST00000623461 GYG2O15488 501 aa9.68□□□□□ -0.86
VCL-206ENST00000623461 FTCDO95954 541 aa9.68□□□□□ -0.86
VCL-206ENST00000623461 HADHQ16836 314 aaKnown RBP9.68□□□□□ -0.86
VCL-206ENST00000623461 NAA35Q5VZE5 725 aa9.68□□□□□ -0.86
VCL-206ENST00000623461 KRT80Q6KB66 452 aa9.68□□□□□ -0.86
VCL-206ENST00000623461 IFT122Q9HBG6 1241 aa9.68□□□□□ -0.86
VCL-206ENST00000623461 ZMYM1Q5SVZ6 1142 aa9.68□□□□□ -0.86
VCL-206ENST00000623461 ZNF579Q8NAF0 562 aaKnown RBP9.68□□□□□ -0.86
VCL-206ENST00000623461 CEP70Q8NHQ1 597 aa9.68□□□□□ -0.86
VCL-206ENST00000623461 PCDHB13Q9Y5F0 798 aa9.68□□□□□ -0.86
VCL-206ENST00000623461 MYOM2P54296 1465 aa9.68□□□□□ -0.86
VCL-206ENST00000623461 A0A087WWV3 80 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 LDHBP07195 334 aaKnown RBP9.67□□□□□ -0.86
VCL-206ENST00000623461 SCG2P13521 617 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 CCNE1P24864 410 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 RAD23BP54727 409 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 E4F1Q66K89 784 aaPredicted RBP9.67□□□□□ -0.86
VCL-206ENST00000623461 TRIM11Q96F44 468 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 FAM167BQ9BTA0 163 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 PAIP2BQ9ULR5 123 aaKnown RBP9.67□□□□□ -0.86
VCL-206ENST00000623461 LAMC1P11047 1609 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 CYP21A2P08686 494 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 MAGOHP61326 146 aaKnown RBP9.67□□□□□ -0.86
VCL-206ENST00000623461 VSNL1P62760 191 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 AP2B1P63010 937 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 PPARAQ07869 468 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 RASA3Q14644 834 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 ZNF449Q6P9G9 518 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 GPBP1Q86WP2 473 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 ZSCAN10Q96SZ4 725 aaPredicted RBP9.67□□□□□ -0.86
VCL-206ENST00000623461 SH3TC1Q8TE82 1336 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 MMP1P03956 469 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 MX2P20592 715 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 CASC4Q6P4E1 433 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 PDZD8Q8NEN9 1154 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 GDAP1Q8TB36 358 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 PAGE5Q96GU1 130 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 TAF1DQ9H5J8 278 aaPredicted RBP9.67□□□□□ -0.86
VCL-206ENST00000623461 KCNG1Q9UIX4 513 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 FGAP02671 866 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 BFSP1Q12934 665 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 ATG16L1Q676U5 607 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 NYAP1Q6ZVC0 841 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 C3orf20Q8ND61 904 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 ZCRB1Q8TBF4 217 aaKnown RBP9.67□□□□□ -0.86
VCL-206ENST00000623461 SLC39A2Q9NP94 309 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 MAP3K19Q56UN5 1328 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 C6orf229H3BNL8 230 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 FAM26FQ5R3K3 315 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 KRT28Q7Z3Y7 464 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 FTOQ9C0B1 505 aaKnown RBP eCLIP9.67□□□□□ -0.86
VCL-206ENST00000623461 GPR108Q9NPR9 543 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 AATFQ9NY61 560 aaKnown RBP eCLIP9.67□□□□□ -0.86
VCL-206ENST00000623461 PTPN22Q9Y2R2 807 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 SNX1Q13596 522 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 MOV10L1Q9BXT6 1211 aaKnown RBP9.67□□□□□ -0.86
VCL-206ENST00000623461 STK17AQ9UEE5 414 aa9.67□□□□□ -0.86
VCL-206ENST00000623461 EIF4A1P60842 406 aaKnown RBP9.66□□□□□ -0.86
VCL-206ENST00000623461 NXNQ6DKJ4 435 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 PPP1R2P3Q6NXS1 205 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 NFATC2IPQ8NCF5 419 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 IP6K1Q92551 441 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms