RNA–Protein interactions for RNA: ENST00000614496.4

MSH6-213, Transcript of mutS homolog 6, humanhuman

TSL 1 (best) BASIC

Gene MSH6, Length 4,150 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-213ENST00000614496 DYDC1Q8WWB3 177 aa13.86□□□□□ -0.19
MSH6-213ENST00000614496 LZTS2Q9BRK4 669 aa13.86□□□□□ -0.19
MSH6-213ENST00000614496 PANK4Q9NVE7 773 aa13.86□□□□□ -0.19
MSH6-213ENST00000614496 LCMT1Q9UIC8 334 aa13.86□□□□□ -0.19
MSH6-213ENST00000614496 NFU1Q9UMS0 254 aa13.86□□□□□ -0.19
MSH6-213ENST00000614496 PCDHA12Q9UN75 941 aa13.86□□□□□ -0.19
MSH6-213ENST00000614496 KRT13P13646 458 aa13.86□□□□□ -0.19
MSH6-213ENST00000614496 IFI16Q16666 785 aaKnown RBP13.86□□□□□ -0.19
MSH6-213ENST00000614496 UBE2SQ16763 222 aa13.86□□□□□ -0.19
MSH6-213ENST00000614496 FAM98CQ17RN3 349 aaKnown RBP13.86□□□□□ -0.19
MSH6-213ENST00000614496 FOXR1Q6PIV2 292 aa13.86□□□□□ -0.19
MSH6-213ENST00000614496 GPBP1Q86WP2 473 aa13.86□□□□□ -0.19
MSH6-213ENST00000614496 PCDHA6Q9UN73 950 aa13.86□□□□□ -0.19
MSH6-213ENST00000614496 PACSIN2Q9UNF0 486 aaPredicted RBP13.86□□□□□ -0.19
MSH6-213ENST00000614496 PCDHA8Q9Y5H6 950 aa13.86□□□□□ -0.19
MSH6-213ENST00000614496 FAM205AQ6ZU69 1335 aa13.86□□□□□ -0.19
MSH6-213ENST00000614496 E7EVH7 732 aa13.86□□□□□ -0.19
MSH6-213ENST00000614496 SLC16A2P36021 539 aa13.86□□□□□ -0.19
MSH6-213ENST00000614496 PDXDC2PQ6P474 469 aa13.86□□□□□ -0.19
MSH6-213ENST00000614496 DGKHQ86XP1 1220 aa13.86□□□□□ -0.19
MSH6-213ENST00000614496 POTEDQ86YR6 584 aa13.86□□□□□ -0.19
MSH6-213ENST00000614496 MSANTD4Q8NCY6 345 aa13.86□□□□□ -0.19
MSH6-213ENST00000614496 ADAMTS1Q9UHI8 967 aa13.86□□□□□ -0.19
MSH6-213ENST00000614496 CAPN7Q9Y6W3 813 aa13.86□□□□□ -0.19
MSH6-213ENST00000614496 MFSD14BQ5SR56 506 aa13.85□□□□□ -0.19
MSH6-213ENST00000614496 FAM182BQ5T319 152 aa13.85□□□□□ -0.19
MSH6-213ENST00000614496 NAA35Q5VZE5 725 aa13.85□□□□□ -0.19
MSH6-213ENST00000614496 HNRNPLLQ8WVV9 542 aaKnown RBP13.85□□□□□ -0.19
MSH6-213ENST00000614496 SYCP3Q8IZU3 236 aa13.85□□□□□ -0.19
MSH6-213ENST00000614496 FNBP4Q8N3X1 1017 aaPredicted RBP13.85□□□□□ -0.19
MSH6-213ENST00000614496 AK8Q96MA6 479 aa13.85□□□□□ -0.19
MSH6-213ENST00000614496 SLC4A9Q96Q91 983 aa13.85□□□□□ -0.19
MSH6-213ENST00000614496 RIOK1Q9BRS2 568 aaKnown RBP13.85□□□□□ -0.19
MSH6-213ENST00000614496 TRIM9Q9C026 710 aa13.85□□□□□ -0.19
MSH6-213ENST00000614496 KIAA1024Q9UPX6 916 aa13.85□□□□□ -0.19
MSH6-213ENST00000614496 ZNF335Q9H4Z2 1342 aaPredicted RBP13.85□□□□□ -0.19
MSH6-213ENST00000614496 A0A1W2PQC6 194 aa13.85□□□□□ -0.19
MSH6-213ENST00000614496 KCNQ2O43526 872 aa13.85□□□□□ -0.19
MSH6-213ENST00000614496 GALNT17Q6IS24 598 aa13.85□□□□□ -0.19
MSH6-213ENST00000614496 FAM133AQ8N9E0 248 aa13.85□□□□□ -0.19
MSH6-213ENST00000614496 SELENOSQ9BQE4 189 aa13.85□□□□□ -0.19
MSH6-213ENST00000614496 CUEDC2Q9H467 287 aa13.85□□□□□ -0.19
MSH6-213ENST00000614496 PCDHB13Q9Y5F0 798 aa13.85□□□□□ -0.19
MSH6-213ENST00000614496 GOLGA8KD6RF30 607 aa13.84□□□□□ -0.19
MSH6-213ENST00000614496 HLA-DOAP06340 250 aa13.84□□□□□ -0.19
MSH6-213ENST00000614496 EPHB4P54760 987 aa13.84□□□□□ -0.19
MSH6-213ENST00000614496 E2F4Q16254 413 aa13.84□□□□□ -0.19
MSH6-213ENST00000614496 DPP8Q6V1X1 898 aaPredicted RBP13.84□□□□□ -0.19
MSH6-213ENST00000614496 CPLX4Q7Z7G2 160 aa13.84□□□□□ -0.19
MSH6-213ENST00000614496 MS4A14Q96JA4 679 aa13.84□□□□□ -0.19
MSH6-213ENST00000614496 CCDC114Q96M63 670 aa13.84□□□□□ -0.19
MSH6-213ENST00000614496 OSBPL9Q96SU4 736 aa13.84□□□□□ -0.19
MSH6-213ENST00000614496 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.84□□□□□ -0.191e-6■■■■■ 44.2
MSH6-213ENST00000614496 SRGNP10124 158 aa13.84□□□□□ -0.19
MSH6-213ENST00000614496 PLCG2P16885 1265 aa13.84□□□□□ -0.19
MSH6-213ENST00000614496 ADAM9Q13443 819 aa13.84□□□□□ -0.19
MSH6-213ENST00000614496 CCDC121Q6ZUS5 278 aa13.84□□□□□ -0.19
MSH6-213ENST00000614496 ERMNQ8TAM6 284 aa13.84□□□□□ -0.19
MSH6-213ENST00000614496 HPCAL4Q9UM19 191 aa13.84□□□□□ -0.19
MSH6-213ENST00000614496 LAD1O00515 517 aa13.84□□□□□ -0.19
MSH6-213ENST00000614496 CHMP2AO43633 222 aa13.84□□□□□ -0.19
MSH6-213ENST00000614496 HERVK_113P62684 666 aa13.84□□□□□ -0.19
MSH6-213ENST00000614496 EZH2Q15910 746 aaKnown RBP13.84□□□□□ -0.19
MSH6-213ENST00000614496 CEP57Q86XR8 500 aa13.84□□□□□ -0.19
MSH6-213ENST00000614496 CNBD1Q8NA66 436 aa13.84□□□□□ -0.19
MSH6-213ENST00000614496 SPATA4Q8NEY3 305 aa13.84□□□□□ -0.19
MSH6-213ENST00000614496 DPH5Q9H2P9 285 aa13.84□□□□□ -0.19
MSH6-213ENST00000614496 ORC4O43929 436 aa13.83□□□□□ -0.19
MSH6-213ENST00000614496 ABCB4P21439 1286 aa13.83□□□□□ -0.19
MSH6-213ENST00000614496 ARHGAP25P42331 645 aa13.83□□□□□ -0.19
MSH6-213ENST00000614496 NNTQ13423 1086 aa13.83□□□□□ -0.19
MSH6-213ENST00000614496 B4GALNT4Q76KP1 1039 aa13.83□□□□□ -0.19
MSH6-213ENST00000614496 SH2D3CQ8N5H7 860 aa13.83□□□□□ -0.19
MSH6-213ENST00000614496 DDX12PQ92771 950 aa13.83□□□□□ -0.19
MSH6-213ENST00000614496 TMEM51Q9NW97 253 aa13.83□□□□□ -0.19
MSH6-213ENST00000614496 STIM2Q9P246 746 aa13.83□□□□□ -0.19
MSH6-213ENST00000614496 DDX25Q9UHL0 483 aaKnown RBP13.83□□□□□ -0.19
MSH6-213ENST00000614496 AFDNP55196 1824 aaKnown RBP13.83□□□□□ -0.19
MSH6-213ENST00000614496 SSR1P43307 286 aaKnown RBP13.83□□□□□ -0.2
MSH6-213ENST00000614496 USH1GQ495M9 461 aa13.83□□□□□ -0.2
MSH6-213ENST00000614496 PEX26Q7Z412 305 aa13.83□□□□□ -0.2
MSH6-213ENST00000614496 CCDC155Q8N6L0 562 aa13.83□□□□□ -0.2
MSH6-213ENST00000614496 CAMTA2O94983 1202 aa13.83□□□□□ -0.2
MSH6-213ENST00000614496 MYL1P05976 194 aa13.83□□□□□ -0.2
MSH6-213ENST00000614496 CCNI2Q6ZMN8 369 aaPredicted RBP13.83□□□□□ -0.2
MSH6-213ENST00000614496 SH3RF1Q7Z6J0 888 aa13.83□□□□□ -0.2
MSH6-213ENST00000614496 ARFGAP2Q8N6H7 521 aa13.83□□□□□ -0.2
MSH6-213ENST00000614496 GIMAP7Q8NHV1 300 aa13.83□□□□□ -0.2
MSH6-213ENST00000614496 GJA10Q969M2 543 aa13.83□□□□□ -0.2
MSH6-213ENST00000614496 USP17L5A8MUK1 530 aa13.83□□□□□ -0.2
MSH6-213ENST00000614496 PSMD14O00487 310 aa13.83□□□□□ -0.2
MSH6-213ENST00000614496 TDP2O95551 362 aa13.83□□□□□ -0.2
MSH6-213ENST00000614496 CDK8P49336 464 aa13.83□□□□□ -0.2
MSH6-213ENST00000614496 GTF2IP78347 998 aa13.83□□□□□ -0.2
MSH6-213ENST00000614496 FKBP3Q00688 224 aaKnown RBP13.83□□□□□ -0.2
MSH6-213ENST00000614496 CYP4A11Q02928 519 aa13.83□□□□□ -0.2
MSH6-213ENST00000614496 MUM1L1Q5H9M0 696 aa13.83□□□□□ -0.2
MSH6-213ENST00000614496 TRAPPC11Q7Z392 1133 aa13.83□□□□□ -0.2
MSH6-213ENST00000614496 DAAM2Q86T65 1068 aa13.83□□□□□ -0.2
MSH6-213ENST00000614496 U2AF1L4Q8WU68 220 aaKnown RBP13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms