RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 TIGD5Q53EQ6 642 aa16.42■□□□□ 0.22
SHKBP1-218ENST00000598907 TCEAL5Q5H9L2 206 aa16.42■□□□□ 0.22
SHKBP1-218ENST00000598907 SUGP1Q8IWZ8 645 aaKnown RBP16.42■□□□□ 0.22
SHKBP1-218ENST00000598907 KBTBD3Q8NAB2 608 aa16.42■□□□□ 0.22
SHKBP1-218ENST00000598907 MRPL38Q96DV4 380 aaKnown RBP16.42■□□□□ 0.22
SHKBP1-218ENST00000598907 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.42■□□□□ 0.22
SHKBP1-218ENST00000598907 CLDND1Q9NY35 253 aa16.42■□□□□ 0.22
SHKBP1-218ENST00000598907 Q9Y3F1 56 aa16.42■□□□□ 0.22
SHKBP1-218ENST00000598907 TECTAO75443 2155 aa16.42■□□□□ 0.22
SHKBP1-218ENST00000598907 SPTBN4Q9H254 2564 aa16.42■□□□□ 0.22
SHKBP1-218ENST00000598907 TRIOO75962 3097 aa16.41■□□□□ 0.22
SHKBP1-218ENST00000598907 TCRBV5S4A2TA0A5A2 114 aa16.41■□□□□ 0.22
SHKBP1-218ENST00000598907 TRIM6-TRIM34B2RNG4 842 aa16.41■□□□□ 0.22
SHKBP1-218ENST00000598907 CPT1AP50416 773 aa16.41■□□□□ 0.22
SHKBP1-218ENST00000598907 PTPROQ16827 1216 aa16.41■□□□□ 0.22
SHKBP1-218ENST00000598907 TCTN1Q2MV58 587 aa16.41■□□□□ 0.22
SHKBP1-218ENST00000598907 BANK1Q8NDB2 785 aa16.41■□□□□ 0.22
SHKBP1-218ENST00000598907 OR6J1Q8NGC5 347 aa16.41■□□□□ 0.22
SHKBP1-218ENST00000598907 PBXIP1Q96AQ6 731 aa16.41■□□□□ 0.22
SHKBP1-218ENST00000598907 CHMP4CQ96CF2 233 aa16.41■□□□□ 0.22
SHKBP1-218ENST00000598907 PABPC5Q96DU9 382 aaKnown RBP16.41■□□□□ 0.22
SHKBP1-218ENST00000598907 KMT2EQ8IZD2 1858 aa16.41■□□□□ 0.22
SHKBP1-218ENST00000598907 MYH4Q9Y623 1939 aa16.41■□□□□ 0.22
SHKBP1-218ENST00000598907 ALAS1P13196 640 aa16.4■□□□□ 0.22
SHKBP1-218ENST00000598907 OAZ1P54368 228 aa16.4■□□□□ 0.22
SHKBP1-218ENST00000598907 HERC4Q5GLZ8 1057 aaPredicted RBP16.4■□□□□ 0.22
SHKBP1-218ENST00000598907 CNKSR3Q6P9H4 555 aa16.4■□□□□ 0.22
SHKBP1-218ENST00000598907 RNF135Q8IUD6 432 aa16.4■□□□□ 0.22
SHKBP1-218ENST00000598907 RILPL2Q969X0 211 aa16.4■□□□□ 0.22
SHKBP1-218ENST00000598907 PURBQ96QR8 312 aaKnown RBP16.4■□□□□ 0.22
SHKBP1-218ENST00000598907 VTA1Q9NP79 307 aa16.4■□□□□ 0.22
SHKBP1-218ENST00000598907 ATP8A2Q9NTI2 1148 aa16.4■□□□□ 0.22
SHKBP1-218ENST00000598907 FEM1BQ9UK73 627 aa16.4■□□□□ 0.22
SHKBP1-218ENST00000598907 LCTP09848 1927 aa16.4■□□□□ 0.22
SHKBP1-218ENST00000598907 SCN10AQ9Y5Y9 1956 aa16.4■□□□□ 0.22
SHKBP1-218ENST00000598907 TMEM221A6NGB7 291 aa16.39■□□□□ 0.21
SHKBP1-218ENST00000598907 M0R296 226 aa16.39■□□□□ 0.21
SHKBP1-218ENST00000598907 LRRFIP1Q32MZ4 808 aaKnown RBP16.39■□□□□ 0.21
SHKBP1-218ENST00000598907 DUSP28Q4G0W2 176 aa16.39■□□□□ 0.21
SHKBP1-218ENST00000598907 LRRC8DQ7L1W4 858 aa16.39■□□□□ 0.21
SHKBP1-218ENST00000598907 LRRC47Q8N1G4 583 aaKnown RBP16.39■□□□□ 0.21
SHKBP1-218ENST00000598907 CCDC155Q8N6L0 562 aa16.39■□□□□ 0.21
SHKBP1-218ENST00000598907 DDRGK1Q96HY6 314 aa16.39■□□□□ 0.21
SHKBP1-218ENST00000598907 WDR11Q9BZH6 1224 aa16.39■□□□□ 0.21
SHKBP1-218ENST00000598907 CLIP2Q9UDT6 1046 aa16.39■□□□□ 0.21
SHKBP1-218ENST00000598907 TRIP12Q14669 1992 aaPredicted RBP16.38■□□□□ 0.21
SHKBP1-218ENST00000598907 IKQ13123 557 aaPredicted RBP16.38■□□□□ 0.21
SHKBP1-218ENST00000598907 GPNMBQ14956 572 aa16.38■□□□□ 0.21
SHKBP1-218ENST00000598907 PTGISQ16647 500 aa16.38■□□□□ 0.21
SHKBP1-218ENST00000598907 NFRKBQ6P4R8 1299 aa16.38■□□□□ 0.21
SHKBP1-218ENST00000598907 NSMFQ6X4W1 530 aa16.38■□□□□ 0.21
SHKBP1-218ENST00000598907 RPAINQ86UA6 219 aa16.38■□□□□ 0.21
SHKBP1-218ENST00000598907 AFAP1L1Q8TED9 768 aa16.38■□□□□ 0.21
SHKBP1-218ENST00000598907 EDAQ92838 391 aa16.38■□□□□ 0.21
SHKBP1-218ENST00000598907 ATOH1Q92858 354 aaPredicted RBP16.38■□□□□ 0.21
SHKBP1-218ENST00000598907 TRERF1Q96PN7 1200 aa16.38■□□□□ 0.21
SHKBP1-218ENST00000598907 POP1Q99575 1024 aaKnown RBP16.38■□□□□ 0.21
SHKBP1-218ENST00000598907 PRRX2Q99811 253 aa16.38■□□□□ 0.21
SHKBP1-218ENST00000598907 CTNNA3Q9UI47 895 aa16.38■□□□□ 0.21
SHKBP1-218ENST00000598907 C5orf42Q9H799 3197 aa16.37■□□□□ 0.21
SHKBP1-218ENST00000598907 SELPP16109 830 aa16.37■□□□□ 0.21
SHKBP1-218ENST00000598907 SNAP25P60880 206 aa16.37■□□□□ 0.21
SHKBP1-218ENST00000598907 TRIM67Q6ZTA4 783 aa16.37■□□□□ 0.21
SHKBP1-218ENST00000598907 FSD1Q9BTV5 496 aa16.37■□□□□ 0.21
SHKBP1-218ENST00000598907 NYAP2Q9P242 653 aa16.37■□□□□ 0.21
SHKBP1-218ENST00000598907 NBNO60934 754 aa16.36■□□□□ 0.21
SHKBP1-218ENST00000598907 CSPG5O95196 566 aa16.36■□□□□ 0.21
SHKBP1-218ENST00000598907 RASA1P20936 1047 aa16.36■□□□□ 0.21
SHKBP1-218ENST00000598907 CHMLP26374 656 aa16.36■□□□□ 0.21
SHKBP1-218ENST00000598907 GPM6BQ13491 265 aa16.36■□□□□ 0.21
SHKBP1-218ENST00000598907 EPC2Q52LR7 807 aa16.36■□□□□ 0.21
SHKBP1-218ENST00000598907 BRDTQ58F21 947 aaPredicted RBP16.36■□□□□ 0.21
SHKBP1-218ENST00000598907 MUM1L1Q5H9M0 696 aa16.36■□□□□ 0.21
SHKBP1-218ENST00000598907 CAGE1Q8TC20 777 aa16.36■□□□□ 0.21
SHKBP1-218ENST00000598907 NSUN3Q9H649 340 aaKnown RBP16.36■□□□□ 0.21
SHKBP1-218ENST00000598907 CYP39A1Q9NYL5 469 aa16.36■□□□□ 0.21
SHKBP1-218ENST00000598907 SLC4A4Q9Y6R1 1079 aa16.36■□□□□ 0.21
SHKBP1-218ENST00000598907 ABHD14A-ACY1A0A1B0GW23 586 aa16.35■□□□□ 0.21
SHKBP1-218ENST00000598907 TMEM232C9JQI7 657 aa16.35■□□□□ 0.21
SHKBP1-218ENST00000598907 RNF113AO15541 343 aaKnown RBP16.35■□□□□ 0.21
SHKBP1-218ENST00000598907 CDC45O75419 566 aa16.35■□□□□ 0.21
SHKBP1-218ENST00000598907 CHGBP05060 677 aa16.35■□□□□ 0.21
SHKBP1-218ENST00000598907 ZFYP08048 801 aaPredicted RBP16.35■□□□□ 0.21
SHKBP1-218ENST00000598907 ADD2P35612 726 aa16.35■□□□□ 0.21
SHKBP1-218ENST00000598907 VCPP55072 806 aaKnown RBP16.35■□□□□ 0.21
SHKBP1-218ENST00000598907 PTPN11Q06124 597 aaPredicted RBP16.35■□□□□ 0.21
SHKBP1-218ENST00000598907 UBE3CQ15386 1083 aa16.35■□□□□ 0.21
SHKBP1-218ENST00000598907 SMAD2Q15796 467 aaKnown RBP16.35■□□□□ 0.21
SHKBP1-218ENST00000598907 ZSCAN25Q6NSZ9 544 aa16.35■□□□□ 0.21
SHKBP1-218ENST00000598907 CTR9Q6PD62 1173 aa16.35■□□□□ 0.21
SHKBP1-218ENST00000598907 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.35■□□□□ 0.21
SHKBP1-218ENST00000598907 BMP8AQ7Z5Y6 402 aa16.35■□□□□ 0.21
SHKBP1-218ENST00000598907 MYOCDQ8IZQ8 938 aa16.35■□□□□ 0.21
SHKBP1-218ENST00000598907 FBXL6Q8N531 539 aa16.35■□□□□ 0.21
SHKBP1-218ENST00000598907 COPS5Q92905 334 aa16.35■□□□□ 0.21
SHKBP1-218ENST00000598907 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.35■□□□□ 0.212e-8■■■■■ 26.9
SHKBP1-218ENST00000598907 MKNK2Q9HBH9 465 aa16.35■□□□□ 0.21
SHKBP1-218ENST00000598907 INSL6Q9Y581 213 aa16.35■□□□□ 0.21
SHKBP1-218ENST00000598907 RAD50Q92878 1312 aa16.35■□□□□ 0.21
SHKBP1-218ENST00000598907 PLXNA3P51805 1871 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms