RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 VSIG10LQ86VR7 867 aa12.16□□□□□ -0.46
LIG1-210ENST00000596332 TRIM22Q8IYM9 498 aa12.16□□□□□ -0.46
LIG1-210ENST00000596332 DAGLBQ8NCG7 672 aa12.16□□□□□ -0.46
LIG1-210ENST00000596332 DNERQ8NFT8 737 aa12.16□□□□□ -0.46
LIG1-210ENST00000596332 RAET1EQ8TD07 263 aa12.16□□□□□ -0.46
LIG1-210ENST00000596332 RASGRP4Q8TDF6 673 aa12.16□□□□□ -0.46
LIG1-210ENST00000596332 ZNF333Q96JL9 665 aa12.16□□□□□ -0.46
LIG1-210ENST00000596332 PDCD2LQ9BRP1 358 aa12.16□□□□□ -0.46
LIG1-210ENST00000596332 ALG1Q9BT22 464 aa12.16□□□□□ -0.46
LIG1-210ENST00000596332 PXMP2Q9NR77 195 aa12.16□□□□□ -0.46
LIG1-210ENST00000596332 SYNGAP1Q96PV0 1343 aa12.15□□□□□ -0.46
LIG1-210ENST00000596332 INHAP05111 366 aa12.15□□□□□ -0.46
LIG1-210ENST00000596332 PTGS1P23219 599 aa12.15□□□□□ -0.46
LIG1-210ENST00000596332 CCND3P30281 292 aaPredicted RBP12.15□□□□□ -0.46
LIG1-210ENST00000596332 PGM5Q15124 567 aa12.15□□□□□ -0.46
LIG1-210ENST00000596332 KRT40Q6A162 431 aa12.15□□□□□ -0.46
LIG1-210ENST00000596332 ARMCX2Q7L311 632 aa12.15□□□□□ -0.46
LIG1-210ENST00000596332 MSL3Q8N5Y2 521 aaKnown RBP12.15□□□□□ -0.46
LIG1-210ENST00000596332 SLAIN1Q8ND83 568 aa12.15□□□□□ -0.46
LIG1-210ENST00000596332 ZFP91Q96JP5 570 aaPredicted RBP12.15□□□□□ -0.46
LIG1-210ENST00000596332 PGBD1Q96JS3 809 aa12.15□□□□□ -0.46
LIG1-210ENST00000596332 RMDN3Q96TC7 470 aa12.15□□□□□ -0.46
LIG1-210ENST00000596332 PDGFCQ9NRA1 345 aa12.15□□□□□ -0.46
LIG1-210ENST00000596332 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.15□□□□□ -0.46
LIG1-210ENST00000596332 BIN2Q9UBW5 565 aaPredicted RBP12.15□□□□□ -0.46
LIG1-210ENST00000596332 PCDHA6Q9UN73 950 aa12.15□□□□□ -0.46
LIG1-210ENST00000596332 PCDHA8Q9Y5H6 950 aa12.15□□□□□ -0.46
LIG1-210ENST00000596332 PLXNA1Q9UIW2 1896 aa12.14□□□□□ -0.47
LIG1-210ENST00000596332 LRRC37A2A6NM11 1700 aa12.14□□□□□ -0.47
LIG1-210ENST00000596332 LOC102724159A0A0B4J2E5 919 aa12.14□□□□□ -0.47
LIG1-210ENST00000596332 RBM47A0AV96 593 aaKnown RBP12.14□□□□□ -0.47
LIG1-210ENST00000596332 HMGCRP04035 888 aa12.14□□□□□ -0.47
LIG1-210ENST00000596332 NR3C2P08235 984 aa12.14□□□□□ -0.47
LIG1-210ENST00000596332 GJB2P29033 226 aa12.14□□□□□ -0.47
LIG1-210ENST00000596332 ADCY7P51828 1080 aa12.14□□□□□ -0.47
LIG1-210ENST00000596332 MRPL12P52815 198 aaKnown RBP12.14□□□□□ -0.47
LIG1-210ENST00000596332 UBXN2AP68543 259 aa12.14□□□□□ -0.47
LIG1-210ENST00000596332 AKAP17AQ02040 695 aaKnown RBP12.14□□□□□ -0.47
LIG1-210ENST00000596332 PWP2Q15269 919 aaKnown RBP12.14□□□□□ -0.47
LIG1-210ENST00000596332 LHX8Q68G74 356 aa12.14□□□□□ -0.47
LIG1-210ENST00000596332 FCHSD1Q86WN1 690 aa12.14□□□□□ -0.47
LIG1-210ENST00000596332 TEX2Q8IWB9 1127 aa12.14□□□□□ -0.47
LIG1-210ENST00000596332 TRMT44Q8IYL2 757 aaKnown RBP12.14□□□□□ -0.47
LIG1-210ENST00000596332 FAM177A1Q8N128 213 aaPredicted RBP12.14□□□□□ -0.47
LIG1-210ENST00000596332 FBXO18Q8NFZ0 1043 aa12.14□□□□□ -0.47
LIG1-210ENST00000596332 NSUN6Q8TEA1 469 aaKnown RBP12.14□□□□□ -0.47
LIG1-210ENST00000596332 CUL5Q93034 780 aa12.14□□□□□ -0.47
LIG1-210ENST00000596332 INTS4Q96HW7 963 aaKnown RBP12.14□□□□□ -0.47
LIG1-210ENST00000596332 PCDHA4Q9UN74 947 aa12.14□□□□□ -0.47
LIG1-210ENST00000596332 BRCA2P51587 3418 aa12.14□□□□□ -0.47
LIG1-210ENST00000596332 RBBP6Q7Z6E9 1792 aaKnown RBP12.13□□□□□ -0.47
LIG1-210ENST00000596332 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.13□□□□□ -0.47
LIG1-210ENST00000596332 FAM205CA6NFA0 338 aa12.13□□□□□ -0.47
LIG1-210ENST00000596332 BTBD18B2RXH4 712 aa12.13□□□□□ -0.47
LIG1-210ENST00000596332 KIF28PB7ZC32 967 aa12.13□□□□□ -0.47
LIG1-210ENST00000596332 ARIH2O95376 493 aa12.13□□□□□ -0.47
LIG1-210ENST00000596332 MMP1P03956 469 aa12.13□□□□□ -0.47
LIG1-210ENST00000596332 PRKAR2AP13861 404 aaKnown RBP12.13□□□□□ -0.47
LIG1-210ENST00000596332 EIF2AK2P19525 551 aaKnown RBP12.13□□□□□ -0.47
LIG1-210ENST00000596332 HMGN5P82970 282 aaKnown RBP12.13□□□□□ -0.47
LIG1-210ENST00000596332 SEMA3FQ13275 785 aa12.13□□□□□ -0.47
LIG1-210ENST00000596332 NR5A1Q13285 461 aa12.13□□□□□ -0.47
LIG1-210ENST00000596332 JAKMIP3Q5VZ66 844 aa12.13□□□□□ -0.47
LIG1-210ENST00000596332 CCDC62Q6P9F0 684 aa12.13□□□□□ -0.47
LIG1-210ENST00000596332 BLIDQ8IZY5 108 aa12.13□□□□□ -0.47
LIG1-210ENST00000596332 IWS1Q96ST2 819 aa12.13□□□□□ -0.47
LIG1-210ENST00000596332 UNC93B1Q9H1C4 597 aa12.13□□□□□ -0.47
LIG1-210ENST00000596332 BCAS3Q9H6U6 928 aa12.13□□□□□ -0.47
LIG1-210ENST00000596332 CWC22Q9HCG8 908 aaKnown RBP12.13□□□□□ -0.47
LIG1-210ENST00000596332 C6orf50Q9HD87 102 aa12.13□□□□□ -0.47
LIG1-210ENST00000596332 PAK6Q9NQU5 681 aaPredicted RBP12.13□□□□□ -0.47
LIG1-210ENST00000596332 SLC5A4Q9NY91 659 aa12.13□□□□□ -0.47
LIG1-210ENST00000596332 ASB14A6NK59 587 aa12.12□□□□□ -0.47
LIG1-210ENST00000596332 WNT7AO00755 349 aa12.12□□□□□ -0.47
LIG1-210ENST00000596332 CTAGE5O15320 804 aa12.12□□□□□ -0.47
LIG1-210ENST00000596332 ITGB5P18084 799 aa12.12□□□□□ -0.47
LIG1-210ENST00000596332 SREBF1P36956 1147 aa12.12□□□□□ -0.47
LIG1-210ENST00000596332 MNX1P50219 401 aaPredicted RBP12.12□□□□□ -0.47
LIG1-210ENST00000596332 NLRP5P59047 1200 aa12.12□□□□□ -0.47
LIG1-210ENST00000596332 IRX5P78411 483 aaPredicted RBP12.12□□□□□ -0.47
LIG1-210ENST00000596332 SP2Q02086 613 aa12.12□□□□□ -0.47
LIG1-210ENST00000596332 GUCY1B3Q02153 619 aa12.12□□□□□ -0.47
LIG1-210ENST00000596332 ACVR2BQ13705 512 aa12.12□□□□□ -0.47
LIG1-210ENST00000596332 SLC9C1Q4G0N8 1177 aa12.12□□□□□ -0.47
LIG1-210ENST00000596332 PCNX4Q63HM2 1172 aa12.12□□□□□ -0.47
LIG1-210ENST00000596332 CYP2W1Q8TAV3 490 aa12.12□□□□□ -0.47
LIG1-210ENST00000596332 ANO3Q9BYT9 981 aa12.12□□□□□ -0.47
LIG1-210ENST00000596332 ADD3Q9UEY8 706 aaKnown RBP12.12□□□□□ -0.47
LIG1-210ENST00000596332 NRBP1Q9UHY1 535 aa12.12□□□□□ -0.47
LIG1-210ENST00000596332 UBIAD1Q9Y5Z9 338 aa12.12□□□□□ -0.47
LIG1-210ENST00000596332 IGLV3-22A0A075B6J6 115 aa12.11□□□□□ -0.47
LIG1-210ENST00000596332 CYP3A4P08684 503 aa12.11□□□□□ -0.47
LIG1-210ENST00000596332 CCL5P13501 91 aa12.11□□□□□ -0.47
LIG1-210ENST00000596332 GNA11P29992 359 aa12.11□□□□□ -0.47
LIG1-210ENST00000596332 FOSBP53539 338 aa12.11□□□□□ -0.47
LIG1-210ENST00000596332 AP3B2Q13367 1082 aa12.11□□□□□ -0.47
LIG1-210ENST00000596332 ARHGEF16Q5VV41 709 aa12.11□□□□□ -0.47
LIG1-210ENST00000596332 MFSD14CQ5VZR4 134 aa12.11□□□□□ -0.47
LIG1-210ENST00000596332 GALNT17Q6IS24 598 aa12.11□□□□□ -0.47
LIG1-210ENST00000596332 EEPD1Q7L9B9 569 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms