RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 SLC6A16Q9GZN6 736 aa13.13□□□□□ -0.31
SMAD4-211ENST00000590499 GPCPD1Q9NPB8 672 aa13.13□□□□□ -0.31
SMAD4-211ENST00000590499 RNF146Q9NTX7 359 aa13.13□□□□□ -0.31
SMAD4-211ENST00000590499 MYH6P13533 1939 aa13.13□□□□□ -0.31
SMAD4-211ENST00000590499 CDC45O75419 566 aa13.12□□□□□ -0.31
SMAD4-211ENST00000590499 NR1I2O75469 434 aa13.12□□□□□ -0.31
SMAD4-211ENST00000590499 ICAM1P05362 532 aa13.12□□□□□ -0.31
SMAD4-211ENST00000590499 TAL1P17542 331 aaPredicted RBP13.12□□□□□ -0.31
SMAD4-211ENST00000590499 TRDNQ13061 729 aa13.12□□□□□ -0.31
SMAD4-211ENST00000590499 ERICH6BQ5W0A0 696 aa13.12□□□□□ -0.31
SMAD4-211ENST00000590499 CCDC174Q6PII3 467 aa13.12□□□□□ -0.31
SMAD4-211ENST00000590499 MB21D2Q8IYB1 491 aaPredicted RBP13.12□□□□□ -0.31
SMAD4-211ENST00000590499 TINF2Q9BSI4 451 aa13.12□□□□□ -0.31
SMAD4-211ENST00000590499 ACAD9Q9H845 621 aa13.12□□□□□ -0.31
SMAD4-211ENST00000590499 KAT14Q9H8E8 782 aa13.12□□□□□ -0.31
SMAD4-211ENST00000590499 A1CFQ9NQ94 594 aaKnown RBP13.12□□□□□ -0.31
SMAD4-211ENST00000590499 DDX20Q9UHI6 824 aaKnown RBP13.12□□□□□ -0.31
SMAD4-211ENST00000590499 NRBP1Q9UHY1 535 aa13.12□□□□□ -0.31
SMAD4-211ENST00000590499 LRRC37A2A6NM11 1700 aa13.11□□□□□ -0.31
SMAD4-211ENST00000590499 MSCO60682 206 aa13.11□□□□□ -0.31
SMAD4-211ENST00000590499 WFS1O76024 890 aa13.11□□□□□ -0.31
SMAD4-211ENST00000590499 GOLGA8HP0CJ92 632 aa13.11□□□□□ -0.31
SMAD4-211ENST00000590499 ANTXR2P58335 489 aa13.11□□□□□ -0.31
SMAD4-211ENST00000590499 NECTIN1Q15223 517 aa13.11□□□□□ -0.31
SMAD4-211ENST00000590499 PUS10Q3MIT2 529 aaKnown RBP13.11□□□□□ -0.31
SMAD4-211ENST00000590499 MUM1L1Q5H9M0 696 aa13.11□□□□□ -0.31
SMAD4-211ENST00000590499 IFIT1BQ5T764 474 aaKnown RBP13.11□□□□□ -0.31
SMAD4-211ENST00000590499 PRPF38BQ5VTL8 546 aaKnown RBP13.11□□□□□ -0.31
SMAD4-211ENST00000590499 MAMDC4Q6UXC1 1216 aa13.11□□□□□ -0.31
SMAD4-211ENST00000590499 KIAA1211Q6ZU35 1233 aa13.11□□□□□ -0.31
SMAD4-211ENST00000590499 MSL3Q8N5Y2 521 aaKnown RBP13.11□□□□□ -0.31
SMAD4-211ENST00000590499 FAM133AQ8N9E0 248 aa13.11□□□□□ -0.31
SMAD4-211ENST00000590499 NCOA7Q8NI08 942 aa13.11□□□□□ -0.31
SMAD4-211ENST00000590499 DDX11Q96FC9 970 aa13.11□□□□□ -0.31
SMAD4-211ENST00000590499 TRERF1Q96PN7 1200 aa13.11□□□□□ -0.31
SMAD4-211ENST00000590499 ANO2Q9NQ90 1003 aa13.11□□□□□ -0.31
SMAD4-211ENST00000590499 HOMER2Q9NSB8 354 aa13.11□□□□□ -0.31
SMAD4-211ENST00000590499 CCPG1Q9ULG6 757 aa13.11□□□□□ -0.31
SMAD4-211ENST00000590499 BAZ2BQ9UIF8 2168 aaKnown RBP13.11□□□□□ -0.31
SMAD4-211ENST00000590499 WDR19Q8NEZ3 1342 aa13.11□□□□□ -0.31
SMAD4-211ENST00000590499 SYNGAP1Q96PV0 1343 aa13.11□□□□□ -0.31
SMAD4-211ENST00000590499 SLC27A2O14975 620 aa13.1□□□□□ -0.31
SMAD4-211ENST00000590499 SEPT4O43236 478 aa13.1□□□□□ -0.31
SMAD4-211ENST00000590499 CENPBP07199 599 aaPredicted RBP13.1□□□□□ -0.31
SMAD4-211ENST00000590499 ALAS1P13196 640 aa13.1□□□□□ -0.31
SMAD4-211ENST00000590499 FOXC1Q12948 553 aa13.1□□□□□ -0.31
SMAD4-211ENST00000590499 COL9A3Q14050 684 aaPredicted RBP13.1□□□□□ -0.31
SMAD4-211ENST00000590499 ASPRV1Q53RT3 343 aa13.1□□□□□ -0.31
SMAD4-211ENST00000590499 PRAMEF19Q5SWL8 479 aa13.1□□□□□ -0.31
SMAD4-211ENST00000590499 CREB3L3Q68CJ9 461 aa13.1□□□□□ -0.31
SMAD4-211ENST00000590499 RALYLQ86SE5 291 aaKnown RBP13.1□□□□□ -0.31
SMAD4-211ENST00000590499 SCUBE3Q8IX30 993 aa13.1□□□□□ -0.31
SMAD4-211ENST00000590499 ANKRD35Q8N283 1001 aa13.1□□□□□ -0.31
SMAD4-211ENST00000590499 PAWRQ96IZ0 340 aaKnown RBP13.1□□□□□ -0.31
SMAD4-211ENST00000590499 CPVLQ9H3G5 476 aa13.1□□□□□ -0.31
SMAD4-211ENST00000590499 SENP2Q9HC62 589 aa13.1□□□□□ -0.31
SMAD4-211ENST00000590499 ASTN1O14525 1302 aa13.1□□□□□ -0.31
SMAD4-211ENST00000590499 PFASO15067 1338 aa13.1□□□□□ -0.31
SMAD4-211ENST00000590499 SNAI1O95863 264 aaPredicted RBP13.09□□□□□ -0.31
SMAD4-211ENST00000590499 ZNF865P0CJ78 1059 aaPredicted RBP13.09□□□□□ -0.31
SMAD4-211ENST00000590499 COL6A1P12109 1028 aa13.09□□□□□ -0.31
SMAD4-211ENST00000590499 NECAB2Q7Z6G3 386 aa13.09□□□□□ -0.31
SMAD4-211ENST00000590499 IGDCC4Q8TDY8 1250 aa13.09□□□□□ -0.31
SMAD4-211ENST00000590499 CLEC4DQ8WXI8 215 aa13.09□□□□□ -0.31
SMAD4-211ENST00000590499 UBA5Q9GZZ9 404 aa13.09□□□□□ -0.31
SMAD4-211ENST00000590499 PPP4R2Q9NY27 417 aa13.09□□□□□ -0.31
SMAD4-211ENST00000590499 CYP39A1Q9NYL5 469 aa13.09□□□□□ -0.31
SMAD4-211ENST00000590499 PALM3A6NDB9 673 aaPredicted RBP13.08□□□□□ -0.32
SMAD4-211ENST00000590499 NFIBO00712 420 aa13.08□□□□□ -0.32
SMAD4-211ENST00000590499 IFIT3O14879 490 aaKnown RBP13.08□□□□□ -0.32
SMAD4-211ENST00000590499 AVPP01185 164 aa13.08□□□□□ -0.32
SMAD4-211ENST00000590499 PARP1P09874 1014 aaKnown RBP13.08□□□□□ -0.32
SMAD4-211ENST00000590499 CNGA1P29973 690 aa13.08□□□□□ -0.32
SMAD4-211ENST00000590499 CNTN2Q02246 1040 aa13.08□□□□□ -0.32
SMAD4-211ENST00000590499 TROAPQ12815 778 aa13.08□□□□□ -0.32
SMAD4-211ENST00000590499 CHST3Q7LGC8 479 aa13.08□□□□□ -0.32
SMAD4-211ENST00000590499 ADGRF4Q8IZF3 695 aa13.08□□□□□ -0.32
SMAD4-211ENST00000590499 STAG2Q8N3U4 1231 aa13.08□□□□□ -0.32
SMAD4-211ENST00000590499 MTA3Q9BTC8 594 aa13.08□□□□□ -0.32
SMAD4-211ENST00000590499 HTATIP2Q9BUP3 242 aa13.08□□□□□ -0.32
SMAD4-211ENST00000590499 KATNBL1Q9H079 304 aa13.08□□□□□ -0.32
SMAD4-211ENST00000590499 GMPR2Q9P2T1 348 aaKnown RBP13.08□□□□□ -0.32
SMAD4-211ENST00000590499 MAD2L2Q9UI95 211 aa13.08□□□□□ -0.32
SMAD4-211ENST00000590499 PNMA2Q9UL42 364 aa13.08□□□□□ -0.32
SMAD4-211ENST00000590499 GCGRP47871 477 aa13.07□□□□□ -0.32
SMAD4-211ENST00000590499 GRM4Q14833 912 aa13.07□□□□□ -0.32
SMAD4-211ENST00000590499 WTAPQ15007 396 aa13.07□□□□□ -0.32
SMAD4-211ENST00000590499 SART3Q15020 963 aaKnown RBP13.07□□□□□ -0.32
SMAD4-211ENST00000590499 CDC37Q16543 378 aaPredicted RBP13.07□□□□□ -0.32
SMAD4-211ENST00000590499 SLC35G1Q2M3R5 365 aa13.07□□□□□ -0.32
SMAD4-211ENST00000590499 TMEM67Q5HYA8 995 aa13.07□□□□□ -0.32
SMAD4-211ENST00000590499 CASC1Q6TDU7 716 aa13.07□□□□□ -0.32
SMAD4-211ENST00000590499 ARMCX2Q7L311 632 aa13.07□□□□□ -0.32
SMAD4-211ENST00000590499 MTMR8Q96EF0 704 aa13.07□□□□□ -0.32
SMAD4-211ENST00000590499 C11orf49Q9H6J7 331 aa13.07□□□□□ -0.32
SMAD4-211ENST00000590499 JMJD4Q9H9V9 463 aa13.07□□□□□ -0.32
SMAD4-211ENST00000590499 LY9Q9HBG7 655 aa13.07□□□□□ -0.32
SMAD4-211ENST00000590499 STK17AQ9UEE5 414 aa13.07□□□□□ -0.32
SMAD4-211ENST00000590499 CNPY2Q9Y2B0 182 aa13.07□□□□□ -0.32
SMAD4-211ENST00000590499 ERICH2A1L162 156 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms