RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 LZTS2Q9BRK4 669 aa14.36□□□□□ -0.11
SS18-225ENST00000585121 GPHNQ9NQX3 736 aaPredicted RBP14.36□□□□□ -0.11
SS18-225ENST00000585121 POLR3EQ9NVU0 708 aa14.36□□□□□ -0.11
SS18-225ENST00000585121 TRIM43BA6NCK2 446 aa14.35□□□□□ -0.11
SS18-225ENST00000585121 SH2B2O14492 632 aaPredicted RBP14.35□□□□□ -0.11
SS18-225ENST00000585121 KIAA0355O15063 1070 aa14.35□□□□□ -0.11
SS18-225ENST00000585121 CTAGE5O15320 804 aa14.35□□□□□ -0.11
SS18-225ENST00000585121 CALM1P0DP23 149 aa14.35□□□□□ -0.11
SS18-225ENST00000585121 CALM2P0DP24 149 aa14.35□□□□□ -0.11
SS18-225ENST00000585121 CALM3P0DP25 149 aa14.35□□□□□ -0.11
SS18-225ENST00000585121 LRIT3Q3SXY7 679 aa14.35□□□□□ -0.11
SS18-225ENST00000585121 CXCL17Q6UXB2 119 aa14.35□□□□□ -0.11
SS18-225ENST00000585121 SYNE3Q6ZMZ3 975 aa14.35□□□□□ -0.11
SS18-225ENST00000585121 SH3RF1Q7Z6J0 888 aa14.35□□□□□ -0.11
SS18-225ENST00000585121 TRIM43Q96BQ3 446 aaPredicted RBP14.35□□□□□ -0.11
SS18-225ENST00000585121 GCOM1H8Y6P7 765 aaPredicted RBP14.34□□□□□ -0.11
SS18-225ENST00000585121 POLR2MP0CAP2 368 aa14.34□□□□□ -0.11
SS18-225ENST00000585121 TXNP10599 105 aaKnown RBP14.34□□□□□ -0.11
SS18-225ENST00000585121 LIFRP42702 1097 aa14.34□□□□□ -0.11
SS18-225ENST00000585121 CDK7P50613 346 aa14.34□□□□□ -0.11
SS18-225ENST00000585121 FAAP100Q0VG06 881 aa14.34□□□□□ -0.11
SS18-225ENST00000585121 KRT32Q14532 448 aa14.34□□□□□ -0.11
SS18-225ENST00000585121 RRP36Q96EU6 259 aaKnown RBP14.34□□□□□ -0.11
SS18-225ENST00000585121 SEC63Q9UGP8 760 aaKnown RBP14.34□□□□□ -0.11
SS18-225ENST00000585121 SLC12A7Q9Y666 1083 aa14.34□□□□□ -0.11
SS18-225ENST00000585121 MYL3P08590 195 aa14.33□□□□□ -0.12
SS18-225ENST00000585121 EIF2AK2P19525 551 aaKnown RBP14.33□□□□□ -0.12
SS18-225ENST00000585121 SMARCA1P28370 1054 aa14.33□□□□□ -0.12
SS18-225ENST00000585121 HSD17B4P51659 736 aa14.33□□□□□ -0.12
SS18-225ENST00000585121 ITGA7Q13683 1181 aa14.33□□□□□ -0.12
SS18-225ENST00000585121 SEPT14Q6ZU15 432 aa14.33□□□□□ -0.12
SS18-225ENST00000585121 PIBF1Q8WXW3 757 aa14.33□□□□□ -0.12
SS18-225ENST00000585121 NEK1Q96PY6 1258 aa14.33□□□□□ -0.12
SS18-225ENST00000585121 MYL10Q9BUA6 226 aa14.33□□□□□ -0.12
SS18-225ENST00000585121 SPZ1Q9BXG8 430 aa14.33□□□□□ -0.12
SS18-225ENST00000585121 PXMP2Q9NR77 195 aa14.33□□□□□ -0.12
SS18-225ENST00000585121 PCDH10Q9P2E7 1040 aa14.33□□□□□ -0.12
SS18-225ENST00000585121 KPNA6O60684 536 aa14.32□□□□□ -0.12
SS18-225ENST00000585121 PPP1R11O60927 126 aaPredicted RBP14.32□□□□□ -0.12
SS18-225ENST00000585121 EIF3JO75822 258 aaKnown RBP14.32□□□□□ -0.12
SS18-225ENST00000585121 NR3C2P08235 984 aa14.32□□□□□ -0.12
SS18-225ENST00000585121 TMEM63BQ5T3F8 832 aa14.32□□□□□ -0.12
SS18-225ENST00000585121 COL20A1Q9P218 1284 aa14.32□□□□□ -0.12
SS18-225ENST00000585121 SOX1O00570 391 aaPredicted RBP14.31□□□□□ -0.12
SS18-225ENST00000585121 CYTH3O43739 400 aa14.31□□□□□ -0.12
SS18-225ENST00000585121 TIMP1P01033 207 aa14.31□□□□□ -0.12
SS18-225ENST00000585121 GH1P01241 217 aa14.31□□□□□ -0.12
SS18-225ENST00000585121 PTGS1P23219 599 aa14.31□□□□□ -0.12
SS18-225ENST00000585121 GHRHRQ02643 423 aa14.31□□□□□ -0.12
SS18-225ENST00000585121 FPGSQ05932 587 aa14.31□□□□□ -0.12
SS18-225ENST00000585121 SLC35G1Q2M3R5 365 aa14.31□□□□□ -0.12
SS18-225ENST00000585121 ERICH6BQ5W0A0 696 aa14.31□□□□□ -0.12
SS18-225ENST00000585121 GPR153Q6NV75 609 aa14.31□□□□□ -0.12
SS18-225ENST00000585121 CUL5Q93034 780 aa14.31□□□□□ -0.12
SS18-225ENST00000585121 LRCH3Q96II8 777 aa14.31□□□□□ -0.12
SS18-225ENST00000585121 MTG1Q9BT17 334 aaPredicted RBP14.31□□□□□ -0.12
SS18-225ENST00000585121 LRRC2Q9BYS8 371 aa14.31□□□□□ -0.12
SS18-225ENST00000585121 OPLAHO14841 1288 aa14.31□□□□□ -0.12
SS18-225ENST00000585121 HMGB1P09429 215 aaKnown RBP14.31□□□□□ -0.12
SS18-225ENST00000585121 MYCLP12524 364 aaPredicted RBP14.31□□□□□ -0.12
SS18-225ENST00000585121 CCND2P30279 289 aa14.31□□□□□ -0.12
SS18-225ENST00000585121 HOXA13P31271 388 aaPredicted RBP14.31□□□□□ -0.12
SS18-225ENST00000585121 TSGA10IPQ3SY00 556 aa14.31□□□□□ -0.12
SS18-225ENST00000585121 DHX32Q7L7V1 743 aaKnown RBP14.31□□□□□ -0.12
SS18-225ENST00000585121 FCHSD1Q86WN1 690 aa14.31□□□□□ -0.12
SS18-225ENST00000585121 FAM126BQ8IXS8 530 aa14.31□□□□□ -0.12
SS18-225ENST00000585121 SLC43A3Q8NBI5 491 aa14.31□□□□□ -0.12
SS18-225ENST00000585121 TBX21Q9UL17 535 aa14.31□□□□□ -0.12
SS18-225ENST00000585121 MRVI1Q9Y6F6 885 aa14.31□□□□□ -0.12
SS18-225ENST00000585121 LAMA3Q16787 3333 aa14.3□□□□□ -0.12
SS18-225ENST00000585121 A6NJR5 290 aa14.3□□□□□ -0.12
SS18-225ENST00000585121 ITGB8P26012 769 aa14.3□□□□□ -0.12
SS18-225ENST00000585121 PSMC6P62333 389 aa14.3□□□□□ -0.12
SS18-225ENST00000585121 FGD1P98174 961 aa14.3□□□□□ -0.12
SS18-225ENST00000585121 PURAQ00577 322 aaKnown RBP14.3□□□□□ -0.12
SS18-225ENST00000585121 KCNV1Q6PIU1 500 aa14.3□□□□□ -0.12
SS18-225ENST00000585121 SGMS1Q86VZ5 419 aa14.3□□□□□ -0.12
SS18-225ENST00000585121 TMEM199Q8N511 208 aa14.3□□□□□ -0.12
SS18-225ENST00000585121 FANCBQ8NB91 859 aa14.3□□□□□ -0.12
SS18-225ENST00000585121 COPS5Q92905 334 aa14.3□□□□□ -0.12
SS18-225ENST00000585121 PDCD2LQ9BRP1 358 aa14.3□□□□□ -0.12
SS18-225ENST00000585121 LCTP09848 1927 aa14.29□□□□□ -0.12
SS18-225ENST00000585121 REC8O95072 547 aa14.29□□□□□ -0.12
SS18-225ENST00000585121 ARIH2O95376 493 aa14.29□□□□□ -0.12
SS18-225ENST00000585121 SUPT20HL2P0C7V6 817 aa14.29□□□□□ -0.12
SS18-225ENST00000585121 RXRAP19793 462 aa14.29□□□□□ -0.12
SS18-225ENST00000585121 PPIGQ13427 754 aaKnown RBP eCLIP14.29□□□□□ -0.122e-6■■■■□ 23.1
SS18-225ENST00000585121 SHHQ15465 462 aa14.29□□□□□ -0.12
SS18-225ENST00000585121 LY6KQ17RY6 165 aa14.29□□□□□ -0.12
SS18-225ENST00000585121 MFSD5Q6N075 450 aa14.29□□□□□ -0.12
SS18-225ENST00000585121 CCDC62Q6P9F0 684 aa14.29□□□□□ -0.12
SS18-225ENST00000585121 MICU3Q86XE3 530 aa14.29□□□□□ -0.12
SS18-225ENST00000585121 SRBD1Q8N5C6 995 aaKnown RBP14.29□□□□□ -0.12
SS18-225ENST00000585121 SMARCC2Q8TAQ2 1214 aa14.29□□□□□ -0.12
SS18-225ENST00000585121 RBM28Q9NW13 759 aaKnown RBP14.29□□□□□ -0.12
SS18-225ENST00000585121 LRRC37A2A6NM11 1700 aa14.29□□□□□ -0.12
SS18-225ENST00000585121 SZT2Q5T011 3432 aa14.28□□□□□ -0.12
SS18-225ENST00000585121 PLEKHA8P1O95397 391 aa14.28□□□□□ -0.12
SS18-225ENST00000585121 CD4P01730 458 aa14.28□□□□□ -0.12
SS18-225ENST00000585121 EXOSC10Q01780 885 aaKnown RBP14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms