RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 MEIS2O14770 477 aa25.24■■□□□ 1.63
CLN3-234ENST00000568472 LARGE1O95461 756 aa25.24■■□□□ 1.63
CLN3-234ENST00000568472 MYCP01106 439 aaPredicted RBP25.24■■□□□ 1.63
CLN3-234ENST00000568472 GNA11P29992 359 aa25.24■■□□□ 1.63
CLN3-234ENST00000568472 ADCY7P51828 1080 aa25.24■■□□□ 1.63
CLN3-234ENST00000568472 C6orf50Q9HD87 102 aa25.24■■□□□ 1.63
CLN3-234ENST00000568472 VTA1Q9NP79 307 aa25.24■■□□□ 1.63
CLN3-234ENST00000568472 PXMP2Q9NR77 195 aa25.24■■□□□ 1.63
CLN3-234ENST00000568472 FOSP01100 380 aaPredicted RBP25.23■■□□□ 1.63
CLN3-234ENST00000568472 ZNF865P0CJ78 1059 aaPredicted RBP25.23■■□□□ 1.63
CLN3-234ENST00000568472 XBP1P17861 261 aa25.23■■□□□ 1.63
CLN3-234ENST00000568472 CNGA1P29973 690 aa25.23■■□□□ 1.63
CLN3-234ENST00000568472 CCND3P30281 292 aaPredicted RBP25.23■■□□□ 1.63
CLN3-234ENST00000568472 PRAMEF19Q5SWL8 479 aa25.23■■□□□ 1.63
CLN3-234ENST00000568472 FCHSD1Q86WN1 690 aa25.23■■□□□ 1.63
CLN3-234ENST00000568472 TRPV1Q8NER1 839 aa25.23■■□□□ 1.63
CLN3-234ENST00000568472 BICD2Q8TD16 824 aa25.23■■□□□ 1.63
CLN3-234ENST00000568472 ZMYND12Q9H0C1 365 aa25.23■■□□□ 1.63
CLN3-234ENST00000568472 FAM184BQ9ULE4 1060 aa25.23■■□□□ 1.63
CLN3-234ENST00000568472 SGPL1O95470 568 aa25.22■■□□□ 1.63
CLN3-234ENST00000568472 CTDNEP1O95476 244 aa25.22■■□□□ 1.63
CLN3-234ENST00000568472 GJA8P48165 433 aa25.22■■□□□ 1.63
CLN3-234ENST00000568472 STXBP2Q15833 593 aa25.22■■□□□ 1.63
CLN3-234ENST00000568472 TYW1BQ6NUM6 668 aa25.22■■□□□ 1.63
CLN3-234ENST00000568472 USP17L6PQ6QN14 398 aa25.22■■□□□ 1.63
CLN3-234ENST00000568472 DEFB118Q96PH6 123 aa25.22■■□□□ 1.63
CLN3-234ENST00000568472 EHMT1Q9H9B1 1298 aa25.22■■□□□ 1.63
CLN3-234ENST00000568472 ORC3Q9UBD5 711 aaPredicted RBP25.22■■□□□ 1.63
CLN3-234ENST00000568472 DDX20Q9UHI6 824 aaKnown RBP25.22■■□□□ 1.63
CLN3-234ENST00000568472 PLXNA1Q9UIW2 1896 aa25.21■■□□□ 1.63
CLN3-234ENST00000568472 SPDYE3A6NKU9 549 aa25.21■■□□□ 1.63
CLN3-234ENST00000568472 NR3C2P08235 984 aa25.21■■□□□ 1.63
CLN3-234ENST00000568472 AKR1A1P14550 325 aa25.21■■□□□ 1.63
CLN3-234ENST00000568472 GALNT17Q6IS24 598 aa25.21■■□□□ 1.63
CLN3-234ENST00000568472 XRRA1Q6P2D8 792 aa25.21■■□□□ 1.63
CLN3-234ENST00000568472 NSUN7Q8NE18 718 aaKnown RBP25.21■■□□□ 1.63
CLN3-234ENST00000568472 U2AF1L4Q8WU68 220 aaKnown RBP25.21■■□□□ 1.63
CLN3-234ENST00000568472 PDCD2LQ9BRP1 358 aa25.21■■□□□ 1.63
CLN3-234ENST00000568472 KATNBL1Q9H079 304 aa25.21■■□□□ 1.63
CLN3-234ENST00000568472 ZHX1Q9UKY1 873 aaPredicted RBP25.21■■□□□ 1.63
CLN3-234ENST00000568472 PPFIA3O75145 1194 aa25.2■■□□□ 1.62
CLN3-234ENST00000568472 EIF3JO75822 258 aaKnown RBP25.2■■□□□ 1.62
CLN3-234ENST00000568472 EIF2AK2P19525 551 aaKnown RBP25.2■■□□□ 1.62
CLN3-234ENST00000568472 IQSEC1Q6DN90 963 aa25.2■■□□□ 1.62
CLN3-234ENST00000568472 CRISPLD2Q9H0B8 497 aa25.2■■□□□ 1.62
CLN3-234ENST00000568472 FRMPD4Q14CM0 1322 aa25.19■■□□□ 1.62
CLN3-234ENST00000568472 STAM2O75886 525 aa25.19■■□□□ 1.62
CLN3-234ENST00000568472 CCND2P30279 289 aa25.19■■□□□ 1.62
CLN3-234ENST00000568472 AP3B2Q13367 1082 aa25.19■■□□□ 1.62
CLN3-234ENST00000568472 LHX8Q68G74 356 aa25.19■■□□□ 1.62
CLN3-234ENST00000568472 VSIG10LQ86VR7 867 aa25.19■■□□□ 1.62
CLN3-234ENST00000568472 CCDC83Q8IWF9 413 aa25.19■■□□□ 1.62
CLN3-234ENST00000568472 VPS54Q9P1Q0 977 aa25.19■■□□□ 1.62
CLN3-234ENST00000568472 TFRCP02786 760 aaKnown RBP25.18■■□□□ 1.62
CLN3-234ENST00000568472 RARBP10826 455 aa25.18■■□□□ 1.62
CLN3-234ENST00000568472 NLRP5P59047 1200 aa25.18■■□□□ 1.62
CLN3-234ENST00000568472 HMGN5P82970 282 aaKnown RBP25.18■■□□□ 1.62
CLN3-234ENST00000568472 PGM5Q15124 567 aa25.18■■□□□ 1.62
CLN3-234ENST00000568472 CCDC144BQ3MJ40 725 aa25.18■■□□□ 1.62
CLN3-234ENST00000568472 TMX3Q96JJ7 454 aa25.18■■□□□ 1.62
CLN3-234ENST00000568472 RBBP6Q7Z6E9 1792 aaKnown RBP25.18■■□□□ 1.62
CLN3-234ENST00000568472 RBM47A0AV96 593 aaKnown RBP25.17■■□□□ 1.62
CLN3-234ENST00000568472 CLK2P49760 499 aaKnown RBP25.17■■□□□ 1.62
CLN3-234ENST00000568472 TAPT1Q6NXT6 567 aa25.17■■□□□ 1.62
CLN3-234ENST00000568472 REXO1Q8N1G1 1221 aaKnown RBP25.17■■□□□ 1.62
CLN3-234ENST00000568472 ANKLE1Q8NAG6 615 aa25.17■■□□□ 1.62
CLN3-234ENST00000568472 OGDHLQ9ULD0 1010 aa25.17■■□□□ 1.62
CLN3-234ENST00000568472 PCDHA6Q9UN73 950 aa25.17■■□□□ 1.62
CLN3-234ENST00000568472 PCDHA8Q9Y5H6 950 aa25.17■■□□□ 1.62
CLN3-234ENST00000568472 DUSP11O75319 330 aaKnown RBP25.16■■□□□ 1.62
CLN3-234ENST00000568472 FDPSP14324 419 aaKnown RBP25.16■■□□□ 1.62
CLN3-234ENST00000568472 TNFAIP2Q03169 654 aa25.16■■□□□ 1.62
CLN3-234ENST00000568472 ST3GAL1Q11201 340 aa25.16■■□□□ 1.62
CLN3-234ENST00000568472 UBE2SQ16763 222 aa25.16■■□□□ 1.62
CLN3-234ENST00000568472 FBXO16Q8IX29 292 aaPredicted RBP25.16■■□□□ 1.62
CLN3-234ENST00000568472 SCFD2Q8WU76 684 aa25.16■■□□□ 1.62
CLN3-234ENST00000568472 POTEFA5A3E0 1075 aa25.15■■□□□ 1.62
CLN3-234ENST00000568472 MYCLP12524 364 aaPredicted RBP25.15■■□□□ 1.62
CLN3-234ENST00000568472 PCNX4Q63HM2 1172 aa25.15■■□□□ 1.62
CLN3-234ENST00000568472 KCNV1Q6PIU1 500 aa25.15■■□□□ 1.62
CLN3-234ENST00000568472 EEPD1Q7L9B9 569 aa25.15■■□□□ 1.62
CLN3-234ENST00000568472 ARRDC4Q8NCT1 418 aa25.15■■□□□ 1.62
CLN3-234ENST00000568472 ALG1Q9BT22 464 aa25.15■■□□□ 1.62
CLN3-234ENST00000568472 PCDHA4Q9UN74 947 aa25.15■■□□□ 1.62
CLN3-234ENST00000568472 Q9Y3F1 56 aa25.15■■□□□ 1.62
CLN3-234ENST00000568472 CD2BP2O95400 341 aaKnown RBP25.14■■□□□ 1.62
CLN3-234ENST00000568472 SOX10P56693 466 aa25.14■■□□□ 1.62
CLN3-234ENST00000568472 DAGLBQ8NCG7 672 aa25.14■■□□□ 1.62
CLN3-234ENST00000568472 WDR11Q9BZH6 1224 aa25.14■■□□□ 1.62
CLN3-234ENST00000568472 SPC25Q9HBM1 224 aa25.14■■□□□ 1.62
CLN3-234ENST00000568472 KIF3AQ9Y496 699 aa25.14■■□□□ 1.62
CLN3-234ENST00000568472 CENPFP49454 3210 aa25.13■■□□□ 1.61
CLN3-234ENST00000568472 NKRFO15226 690 aaKnown RBP eCLIP25.13■■□□□ 1.61
CLN3-234ENST00000568472 JAK2O60674 1132 aa25.13■■□□□ 1.61
CLN3-234ENST00000568472 TGFB3P10600 412 aa25.13■■□□□ 1.61
CLN3-234ENST00000568472 EN2P19622 333 aaPredicted RBP25.13■■□□□ 1.61
CLN3-234ENST00000568472 TRIM29Q14134 588 aa25.13■■□□□ 1.61
CLN3-234ENST00000568472 TTLL4Q14679 1199 aa25.13■■□□□ 1.61
CLN3-234ENST00000568472 GNPTABQ3T906 1256 aa25.13■■□□□ 1.61
CLN3-234ENST00000568472 PHF20Q9BVI0 1012 aa25.13■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms