RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, human

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-208	ENST00000567250	BICD2	Q8TD16	824 aa		13.98	□□□□□ -0.17
SF3B3-208	ENST00000567250	FGD4	Q96M96	766 aa		13.98	□□□□□ -0.17
SF3B3-208	ENST00000567250	RMDN3	Q96TC7	470 aa		13.98	□□□□□ -0.17
SF3B3-208	ENST00000567250	TMEM106C	Q9BVX2	250 aa		13.98	□□□□□ -0.17
SF3B3-208	ENST00000567250	ABHD16B	Q9H3Z7	469 aa		13.98	□□□□□ -0.17
SF3B3-208	ENST00000567250	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	13.98	□□□□□ -0.17
SF3B3-208	ENST00000567250	KIF3A	Q9Y496	699 aa		13.98	□□□□□ -0.17
SF3B3-208	ENST00000567250	SMCO2	A6NFE2	343 aa		13.97	□□□□□ -0.17
SF3B3-208	ENST00000567250	IGHA2	P01877	340 aa		13.97	□□□□□ -0.17
SF3B3-208	ENST00000567250	CYBA	P13498	195 aa		13.97	□□□□□ -0.17
SF3B3-208	ENST00000567250	CAPN2	P17655	700 aa		13.97	□□□□□ -0.17
SF3B3-208	ENST00000567250	HOXA13	P31271	388 aa	Predicted RBP	13.97	□□□□□ -0.17
SF3B3-208	ENST00000567250	CACNB2	Q08289	660 aa	Predicted RBP	13.97	□□□□□ -0.17
SF3B3-208	ENST00000567250	PDE4D	Q08499	809 aa		13.97	□□□□□ -0.17
SF3B3-208	ENST00000567250	AP3B2	Q13367	1082 aa		13.97	□□□□□ -0.17
SF3B3-208	ENST00000567250	NSUN7	Q8NE18	718 aa	Known RBP	13.97	□□□□□ -0.17
SF3B3-208	ENST00000567250	MORC4	Q8TE76	937 aa		13.97	□□□□□ -0.17
SF3B3-208	ENST00000567250	IWS1	Q96ST2	819 aa		13.97	□□□□□ -0.17
SF3B3-208	ENST00000567250	ZMYND12	Q9H0C1	365 aa		13.97	□□□□□ -0.17
SF3B3-208	ENST00000567250	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	13.97	□□□□□ -0.17	2e-7	■■■■□ 23.4
SF3B3-208	ENST00000567250	RNF208	Q9H0X6	261 aa		13.97	□□□□□ -0.17
SF3B3-208	ENST00000567250	VTA1	Q9NP79	307 aa		13.97	□□□□□ -0.17
SF3B3-208	ENST00000567250	RIC8A	Q9NPQ8	531 aa		13.97	□□□□□ -0.17
SF3B3-208	ENST00000567250	ORC3	Q9UBD5	711 aa	Predicted RBP	13.97	□□□□□ -0.17
SF3B3-208	ENST00000567250	ZHX1	Q9UKY1	873 aa	Predicted RBP	13.97	□□□□□ -0.17
SF3B3-208	ENST00000567250	FRMPD4	Q14CM0	1322 aa		13.96	□□□□□ -0.17
SF3B3-208	ENST00000567250	MEIS2	O14770	477 aa		13.96	□□□□□ -0.17
SF3B3-208	ENST00000567250	PPFIA3	O75145	1194 aa		13.96	□□□□□ -0.17
SF3B3-208	ENST00000567250	CTDNEP1	O95476	244 aa		13.96	□□□□□ -0.17
SF3B3-208	ENST00000567250	FOS	P01100	380 aa	Predicted RBP	13.96	□□□□□ -0.17
SF3B3-208	ENST00000567250	CCL5	P13501	91 aa		13.96	□□□□□ -0.17
SF3B3-208	ENST00000567250	AKR1A1	P14550	325 aa		13.96	□□□□□ -0.17
SF3B3-208	ENST00000567250	EDNRB	P24530	442 aa		13.96	□□□□□ -0.17
SF3B3-208	ENST00000567250	GALNT17	Q6IS24	598 aa		13.96	□□□□□ -0.17
SF3B3-208	ENST00000567250	FCHSD1	Q86WN1	690 aa		13.96	□□□□□ -0.17
SF3B3-208	ENST00000567250	REXO1	Q8N1G1	1221 aa	Known RBP	13.96	□□□□□ -0.17
SF3B3-208	ENST00000567250	TBC1D5	Q92609	795 aa		13.96	□□□□□ -0.17
SF3B3-208	ENST00000567250	TMX3	Q96JJ7	454 aa		13.96	□□□□□ -0.17
SF3B3-208	ENST00000567250	TAAR1	Q96RJ0	339 aa		13.96	□□□□□ -0.17
SF3B3-208	ENST00000567250	PXMP2	Q9NR77	195 aa		13.96	□□□□□ -0.17
SF3B3-208	ENST00000567250	VPS54	Q9P1Q0	977 aa		13.96	□□□□□ -0.17
SF3B3-208	ENST00000567250	COL20A1	Q9P218	1284 aa		13.96	□□□□□ -0.17
SF3B3-208	ENST00000567250	ASTN1	O14525	1302 aa		13.95	□□□□□ -0.18
SF3B3-208	ENST00000567250	SEPT4	O43236	478 aa		13.95	□□□□□ -0.18
SF3B3-208	ENST00000567250	EIF2AK2	P19525	551 aa	Known RBP	13.95	□□□□□ -0.18
SF3B3-208	ENST00000567250	CNGA1	P29973	690 aa		13.95	□□□□□ -0.18
SF3B3-208	ENST00000567250	NLRP5	P59047	1200 aa		13.95	□□□□□ -0.18
SF3B3-208	ENST00000567250	ST3GAL1	Q11201	340 aa		13.95	□□□□□ -0.18
SF3B3-208	ENST00000567250	TRIM32	Q13049	653 aa		13.95	□□□□□ -0.18
SF3B3-208	ENST00000567250	TRIM29	Q14134	588 aa		13.95	□□□□□ -0.18
SF3B3-208	ENST00000567250	MTFR1	Q15390	333 aa		13.95	□□□□□ -0.18
SF3B3-208	ENST00000567250	STXBP2	Q15833	593 aa		13.95	□□□□□ -0.18
SF3B3-208	ENST00000567250	TYW1B	Q6NUM6	668 aa		13.95	□□□□□ -0.18
SF3B3-208	ENST00000567250	USP17L6P	Q6QN14	398 aa		13.95	□□□□□ -0.18
SF3B3-208	ENST00000567250	FAM184A	Q8NB25	1140 aa		13.95	□□□□□ -0.18
SF3B3-208	ENST00000567250	PURB	Q96QR8	312 aa	Known RBP	13.95	□□□□□ -0.18
SF3B3-208	ENST00000567250	ALG1	Q9BT22	464 aa		13.95	□□□□□ -0.18
SF3B3-208	ENST00000567250	UNC93B1	Q9H1C4	597 aa		13.95	□□□□□ -0.18
SF3B3-208	ENST00000567250	BRMS1	Q9HCU9	246 aa		13.95	□□□□□ -0.18
SF3B3-208	ENST00000567250	PAK6	Q9NQU5	681 aa	Predicted RBP	13.95	□□□□□ -0.18
SF3B3-208	ENST00000567250	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	13.95	□□□□□ -0.18
SF3B3-208	ENST00000567250	STAM2	O75886	525 aa		13.94	□□□□□ -0.18
SF3B3-208	ENST00000567250	CD2BP2	O95400	341 aa	Known RBP	13.94	□□□□□ -0.18
SF3B3-208	ENST00000567250	SNAI1	O95863	264 aa	Predicted RBP	13.94	□□□□□ -0.18
SF3B3-208	ENST00000567250	MYC	P01106	439 aa	Predicted RBP	13.94	□□□□□ -0.18
SF3B3-208	ENST00000567250	GJB1	P08034	283 aa		13.94	□□□□□ -0.18
SF3B3-208	ENST00000567250	CCND2	P30279	289 aa		13.94	□□□□□ -0.18
SF3B3-208	ENST00000567250	ACVR2B	Q13705	512 aa		13.94	□□□□□ -0.18
SF3B3-208	ENST00000567250	PGM5	Q15124	567 aa		13.94	□□□□□ -0.18
SF3B3-208	ENST00000567250	UBE2S	Q16763	222 aa		13.94	□□□□□ -0.18
SF3B3-208	ENST00000567250	XRRA1	Q6P2D8	792 aa		13.94	□□□□□ -0.18
SF3B3-208	ENST00000567250	HSCB	Q8IWL3	235 aa		13.94	□□□□□ -0.18
SF3B3-208	ENST00000567250	PDCD2L	Q9BRP1	358 aa		13.94	□□□□□ -0.18
SF3B3-208	ENST00000567250	MYH7B	A7E2Y1	1941 aa		13.94	□□□□□ -0.18
SF3B3-208	ENST00000567250	CCDC85C	A6NKD9	419 aa		13.93	□□□□□ -0.18
SF3B3-208	ENST00000567250	JAK2	O60674	1132 aa		13.93	□□□□□ -0.18
SF3B3-208	ENST00000567250	NR3C2	P08235	984 aa		13.93	□□□□□ -0.18
SF3B3-208	ENST00000567250	ZNF865	P0CJ78	1059 aa	Predicted RBP	13.93	□□□□□ -0.18
SF3B3-208	ENST00000567250	CCND3	P30281	292 aa	Predicted RBP	13.93	□□□□□ -0.18
SF3B3-208	ENST00000567250	GNPTAB	Q3T906	1256 aa		13.93	□□□□□ -0.18
SF3B3-208	ENST00000567250	FBXO16	Q8IX29	292 aa	Predicted RBP	13.93	□□□□□ -0.18
SF3B3-208	ENST00000567250	DAGLB	Q8NCG7	672 aa		13.93	□□□□□ -0.18
SF3B3-208	ENST00000567250	SNX21	Q969T3	373 aa		13.93	□□□□□ -0.18
SF3B3-208	ENST00000567250	ANO3	Q9BYT9	981 aa		13.93	□□□□□ -0.18
SF3B3-208	ENST00000567250	DDX20	Q9UHI6	824 aa	Known RBP	13.93	□□□□□ -0.18
SF3B3-208	ENST00000567250	FAM184B	Q9ULE4	1060 aa		13.93	□□□□□ -0.18
SF3B3-208	ENST00000567250	PCDHA4	Q9UN74	947 aa		13.93	□□□□□ -0.18
SF3B3-208	ENST00000567250		K7ELQ4	463 aa	Predicted RBP	13.92	□□□□□ -0.18
SF3B3-208	ENST00000567250	EIF3J	O75822	258 aa	Known RBP	13.92	□□□□□ -0.18
SF3B3-208	ENST00000567250	RARB	P10826	455 aa		13.92	□□□□□ -0.18
SF3B3-208	ENST00000567250	CLK2	P49760	499 aa	Known RBP	13.92	□□□□□ -0.18
SF3B3-208	ENST00000567250	PCNX4	Q63HM2	1172 aa		13.92	□□□□□ -0.18
SF3B3-208	ENST00000567250	KCNV1	Q6PIU1	500 aa		13.92	□□□□□ -0.18
SF3B3-208	ENST00000567250	BLID	Q8IZY5	108 aa		13.92	□□□□□ -0.18
SF3B3-208	ENST00000567250	U2AF1L4	Q8WU68	220 aa	Known RBP	13.92	□□□□□ -0.18
SF3B3-208	ENST00000567250	SCFD2	Q8WU76	684 aa		13.92	□□□□□ -0.18
SF3B3-208	ENST00000567250	DEFB118	Q96PH6	123 aa		13.92	□□□□□ -0.18
SF3B3-208	ENST00000567250	KATNBL1	Q9H079	304 aa		13.92	□□□□□ -0.18
SF3B3-208	ENST00000567250	PCDHA6	Q9UN73	950 aa		13.92	□□□□□ -0.18
SF3B3-208	ENST00000567250	PCDHA8	Q9Y5H6	950 aa		13.92	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms