RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 ZNF263O14978 683 aa15.04■□□□□ -0
CLK3-215ENST00000564353 PDHBP11177 359 aa15.04■□□□□ -0
CLK3-215ENST00000564353 CCNE1P24864 410 aa15.04■□□□□ -0
CLK3-215ENST00000564353 EEF1GP26641 437 aaKnown RBP15.04■□□□□ -0
CLK3-215ENST00000564353 TMC4Q7Z404 712 aa15.04■□□□□ -0
CLK3-215ENST00000564353 NELFCDQ8IXH7 590 aa15.04■□□□□ -0
CLK3-215ENST00000564353 SNX29Q8TEQ0 813 aa15.04■□□□□ -0
CLK3-215ENST00000564353 RIN2Q8WYP3 895 aaPredicted RBP15.04■□□□□ -0
CLK3-215ENST00000564353 CALML4Q96GE6 196 aa15.04■□□□□ -0
CLK3-215ENST00000564353 GJD4Q96KN9 370 aaPredicted RBP15.04■□□□□ -0
CLK3-215ENST00000564353 CRACR2AQ9BSW2 395 aa15.04■□□□□ -0
CLK3-215ENST00000564353 FGFBP2Q9BYJ0 223 aa15.04■□□□□ -0
CLK3-215ENST00000564353 SRGNP10124 158 aa15.03■□□□□ -0
CLK3-215ENST00000564353 GNA11P29992 359 aa15.03■□□□□ -0
CLK3-215ENST00000564353 DNM2P50570 870 aa15.03■□□□□ -0
CLK3-215ENST00000564353 AMPD2Q01433 879 aa15.03■□□□□ -0
CLK3-215ENST00000564353 ARID5AQ03989 594 aa15.03■□□□□ -0
CLK3-215ENST00000564353 C2orf54Q08AI8 447 aa15.03■□□□□ -0
CLK3-215ENST00000564353 TCP10Q12799 353 aa15.03■□□□□ -0
CLK3-215ENST00000564353 KCNB1Q14721 858 aa15.03■□□□□ -0
CLK3-215ENST00000564353 NEDD1Q8NHV4 660 aa15.03■□□□□ -0
CLK3-215ENST00000564353 DNAJC7Q99615 494 aa15.03■□□□□ -0
CLK3-215ENST00000564353 BLOC1S4Q9NUP1 217 aa15.03■□□□□ -0
CLK3-215ENST00000564353 ZNF219Q9P2Y4 722 aaPredicted RBP15.03■□□□□ -0
CLK3-215ENST00000564353 KIAA1551Q9HCM1 1747 aa15.03■□□□□ -0
CLK3-215ENST00000564353 TNRC6CQ9HCJ0 1690 aaKnown RBP15.03■□□□□ -0
CLK3-215ENST00000564353 LRRIQ3A6PVS8 624 aaPredicted RBP15.03■□□□□ -0
CLK3-215ENST00000564353 EDIL3O43854 480 aa15.03■□□□□ -0
CLK3-215ENST00000564353 TRIM14Q14142 442 aa15.03■□□□□ -0
CLK3-215ENST00000564353 ANKS1AQ92625 1134 aa15.03■□□□□ -0
CLK3-215ENST00000564353 PNMA5Q96PV4 448 aa15.03■□□□□ -0
CLK3-215ENST00000564353 NLRC4Q9NPP4 1024 aa15.03■□□□□ -0
CLK3-215ENST00000564353 ZNHIT6Q9NWK9 470 aaKnown RBP15.03■□□□□ -0
CLK3-215ENST00000564353 ADAM21Q9UKJ8 722 aa15.03■□□□□ -0
CLK3-215ENST00000564353 FAN1Q9Y2M0 1017 aa15.03■□□□□ -0
CLK3-215ENST00000564353 GPR75-ASB3A0A0A6YYF3 556 aa15.02■□□□□ -0
CLK3-215ENST00000564353 PDE2AO00408 941 aaPredicted RBP15.02■□□□□ -0
CLK3-215ENST00000564353 SERPINB2P05120 415 aa15.02■□□□□ -0
CLK3-215ENST00000564353 HSPA1LP34931 641 aa15.02■□□□□ -0
CLK3-215ENST00000564353 PPP4CP60510 307 aa15.02■□□□□ -0
CLK3-215ENST00000564353 PTPROQ16827 1216 aa15.02■□□□□ -0
CLK3-215ENST00000564353 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.02■□□□□ -0
CLK3-215ENST00000564353 SV2BQ7L1I2 683 aa15.02■□□□□ -0
CLK3-215ENST00000564353 DAGLAQ9Y4D2 1042 aa15.02■□□□□ -0
CLK3-215ENST00000564353 LAMB2P55268 1798 aa15.02■□□□□ -0
CLK3-215ENST00000564353 USP17L15C9J2P7 530 aa15.02■□□□□ -0
CLK3-215ENST00000564353 USP17L13C9JLJ4 530 aa15.02■□□□□ -0
CLK3-215ENST00000564353 USP17L11C9JVI0 530 aa15.02■□□□□ -0
CLK3-215ENST00000564353 USP17L18D6R9N7 530 aa15.02■□□□□ -0
CLK3-215ENST00000564353 USP17L22D6RA61 530 aa15.02■□□□□ -0
CLK3-215ENST00000564353 USP17L17D6RBQ6 530 aa15.02■□□□□ -0
CLK3-215ENST00000564353 USP17L19D6RCP7 530 aa15.02■□□□□ -0
CLK3-215ENST00000564353 USP17L20D6RJB6 530 aa15.02■□□□□ -0
CLK3-215ENST00000564353 NCK2O43639 380 aa15.02■□□□□ -0
CLK3-215ENST00000564353 PPP1R11O60927 126 aaPredicted RBP15.02■□□□□ -0
CLK3-215ENST00000564353 FECHP22830 423 aa15.02■□□□□ -0
CLK3-215ENST00000564353 USP17L24Q0WX57 530 aa15.02■□□□□ -0
CLK3-215ENST00000564353 RC3H1Q5TC82 1133 aaKnown RBP15.02■□□□□ -0
CLK3-215ENST00000564353 USP17L6PQ6QN14 398 aa15.02■□□□□ -0
CLK3-215ENST00000564353 RRAGAQ7L523 313 aa15.02■□□□□ -0
CLK3-215ENST00000564353 DNAAF5Q86Y56 855 aa15.02■□□□□ -0
CLK3-215ENST00000564353 DAGLBQ8NCG7 672 aa15.02■□□□□ -0
CLK3-215ENST00000564353 TBC1D16Q8TBP0 767 aa15.02■□□□□ -0
CLK3-215ENST00000564353 SPZ1Q9BXG8 430 aa15.02■□□□□ -0
CLK3-215ENST00000564353 KCNQ5Q9NR82 932 aa15.02■□□□□ -0
CLK3-215ENST00000564353 SAR1BQ9Y6B6 198 aa15.02■□□□□ -0
CLK3-215ENST00000564353 USP17L10C9JJH3 530 aa15.02□□□□□ -0.01
CLK3-215ENST00000564353 IPO7O95373 1038 aaKnown RBP15.02□□□□□ -0.01
CLK3-215ENST00000564353 MOCS3O95396 460 aa15.02□□□□□ -0.01
CLK3-215ENST00000564353 EZH2Q15910 746 aaKnown RBP15.02□□□□□ -0.01
CLK3-215ENST00000564353 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.02□□□□□ -0.01
CLK3-215ENST00000564353 DDX12PQ92771 950 aa15.02□□□□□ -0.01
CLK3-215ENST00000564353 DHTKD1Q96HY7 919 aaPredicted RBP15.02□□□□□ -0.01
CLK3-215ENST00000564353 CCDC42Q96M95 316 aa15.02□□□□□ -0.01
CLK3-215ENST00000564353 TRIM34Q9BYJ4 488 aa15.02□□□□□ -0.01
CLK3-215ENST00000564353 DEF6Q9H4E7 631 aa15.02□□□□□ -0.01
CLK3-215ENST00000564353 CAPN6Q9Y6Q1 641 aa15.02□□□□□ -0.01
CLK3-215ENST00000564353 AFF2P51816 1311 aa15.01□□□□□ -0.01
CLK3-215ENST00000564353 ADCY7P51828 1080 aa15.01□□□□□ -0.01
CLK3-215ENST00000564353 CASP8Q14790 479 aa15.01□□□□□ -0.01
CLK3-215ENST00000564353 BRD3Q15059 726 aa15.01□□□□□ -0.01
CLK3-215ENST00000564353 SLC30A10Q6XR72 485 aa15.01□□□□□ -0.01
CLK3-215ENST00000564353 ZFPM1Q8IX07 1006 aa15.01□□□□□ -0.01
CLK3-215ENST00000564353 SEPT12Q8IYM1 358 aa15.01□□□□□ -0.01
CLK3-215ENST00000564353 LARP4BQ92615 738 aaKnown RBP15.01□□□□□ -0.01
CLK3-215ENST00000564353 CCDC47Q96A33 483 aaKnown RBP15.01□□□□□ -0.01
CLK3-215ENST00000564353 RREB1Q92766 1687 aa15.01□□□□□ -0.01
CLK3-215ENST00000564353 BUB1O43683 1085 aa15.01□□□□□ -0.01
CLK3-215ENST00000564353 MYBL2P10244 700 aa15.01□□□□□ -0.01
CLK3-215ENST00000564353 STAT3P40763 770 aa15.01□□□□□ -0.01
CLK3-215ENST00000564353 NAP1L1P55209 391 aaKnown RBP15.01□□□□□ -0.01
CLK3-215ENST00000564353 TRAPPC11Q7Z392 1133 aa15.01□□□□□ -0.01
CLK3-215ENST00000564353 TTYH3Q9C0H2 523 aa15.01□□□□□ -0.01
CLK3-215ENST00000564353 MTMR4Q9NYA4 1195 aa15.01□□□□□ -0.01
CLK3-215ENST00000564353 L1RE1Q9UN81 338 aa15.01□□□□□ -0.01
CLK3-215ENST00000564353 COL5A3P25940 1745 aaPredicted RBP15□□□□□ -0.01
CLK3-215ENST00000564353 E9PMD0 336 aa15□□□□□ -0.01
CLK3-215ENST00000564353 NFIAQ12857 509 aa15□□□□□ -0.01
CLK3-215ENST00000564353 WHAMMP3Q1A5X7 153 aa15□□□□□ -0.01
CLK3-215ENST00000564353 HDXQ7Z353 690 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms