RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 EOMESO95936 686 aa7.84□□□□□ -1.15
LRRC28-220ENST00000561253 PROCP04070 461 aa7.84□□□□□ -1.15
LRRC28-220ENST00000561253 U2AF1L5P0DN76 240 aaPredicted RBP7.84□□□□□ -1.15
LRRC28-220ENST00000561253 PHKG2P15735 406 aa7.84□□□□□ -1.15
LRRC28-220ENST00000561253 PRKAR2BP31323 418 aa7.84□□□□□ -1.15
LRRC28-220ENST00000561253 U2AF1Q01081 240 aaKnown RBP eCLIP7.84□□□□□ -1.15
LRRC28-220ENST00000561253 CYP27A1Q02318 531 aa7.84□□□□□ -1.15
LRRC28-220ENST00000561253 NFIAQ12857 509 aa7.84□□□□□ -1.15
LRRC28-220ENST00000561253 MTHFSDQ2M296 383 aaKnown RBP7.84□□□□□ -1.15
LRRC28-220ENST00000561253 CCDC144BQ3MJ40 725 aa7.84□□□□□ -1.15
LRRC28-220ENST00000561253 BBS9Q3SYG4 887 aa7.84□□□□□ -1.15
LRRC28-220ENST00000561253 GNPTABQ3T906 1256 aa7.84□□□□□ -1.15
LRRC28-220ENST00000561253 VHLLQ6RSH7 139 aa7.84□□□□□ -1.15
LRRC28-220ENST00000561253 TMEM192Q8IY95 271 aa7.84□□□□□ -1.15
LRRC28-220ENST00000561253 CELF2-AS1Q8N7Q2 184 aa7.84□□□□□ -1.15
LRRC28-220ENST00000561253 GATA6Q92908 595 aa7.84□□□□□ -1.15
LRRC28-220ENST00000561253 DBNDD2Q9BQY9 259 aa7.84□□□□□ -1.15
LRRC28-220ENST00000561253 PRDM5Q9NQX1 630 aaPredicted RBP7.84□□□□□ -1.15
LRRC28-220ENST00000561253 SUCOQ9UBS9 1254 aaKnown RBP7.84□□□□□ -1.15
LRRC28-220ENST00000561253 NUDCQ9Y266 331 aa7.84□□□□□ -1.15
LRRC28-220ENST00000561253 PCDH11XQ9BZA7 1347 aa7.83□□□□□ -1.16
LRRC28-220ENST00000561253 PCDH11YQ9BZA8 1340 aa7.83□□□□□ -1.16
LRRC28-220ENST00000561253 FAM170BA6NMN3 283 aa7.83□□□□□ -1.16
LRRC28-220ENST00000561253 PMS1P54277 932 aaKnown RBP7.83□□□□□ -1.16
LRRC28-220ENST00000561253 RNF4P78317 190 aa7.83□□□□□ -1.16
LRRC28-220ENST00000561253 SLC7A5Q01650 507 aa7.83□□□□□ -1.16
LRRC28-220ENST00000561253 DDR2Q16832 855 aa7.83□□□□□ -1.16
LRRC28-220ENST00000561253 AMOTQ4VCS5 1084 aa7.83□□□□□ -1.16
LRRC28-220ENST00000561253 DUSP27Q5VZP5 1158 aa7.83□□□□□ -1.16
LRRC28-220ENST00000561253 C6orf15Q6UXA7 325 aaPredicted RBP7.83□□□□□ -1.16
LRRC28-220ENST00000561253 KREMEN1Q96MU8 473 aa7.83□□□□□ -1.16
LRRC28-220ENST00000561253 ZSWIM4Q9H7M6 989 aa7.83□□□□□ -1.16
LRRC28-220ENST00000561253 ATG3Q9NT62 314 aa7.83□□□□□ -1.16
LRRC28-220ENST00000561253 GTF2IRD1Q9UHL9 959 aa7.83□□□□□ -1.16
LRRC28-220ENST00000561253 ZNF214Q9UL59 606 aaPredicted RBP7.83□□□□□ -1.16
LRRC28-220ENST00000561253 PCDHB10Q9UN67 800 aa7.83□□□□□ -1.16
LRRC28-220ENST00000561253 MAPK8IP1Q9UQF2 711 aa7.83□□□□□ -1.16
LRRC28-220ENST00000561253 TOGARAM1Q9Y4F4 1720 aa7.83□□□□□ -1.16
LRRC28-220ENST00000561253 CEMIPQ8WUJ3 1361 aa7.83□□□□□ -1.16
LRRC28-220ENST00000561253 MRC1P22897 1456 aa7.82□□□□□ -1.16
LRRC28-220ENST00000561253 CCDC85CA6NKD9 419 aa7.82□□□□□ -1.16
LRRC28-220ENST00000561253 K7ELQ4 463 aaPredicted RBP7.82□□□□□ -1.16
LRRC28-220ENST00000561253 IGLV1-40P01703 118 aa7.82□□□□□ -1.16
LRRC28-220ENST00000561253 FSTP19883 344 aa7.82□□□□□ -1.16
LRRC28-220ENST00000561253 SERINC3Q13530 473 aa7.82□□□□□ -1.16
LRRC28-220ENST00000561253 NCAPHQ15003 741 aa7.82□□□□□ -1.16
LRRC28-220ENST00000561253 PLEKHO1Q53GL0 409 aaPredicted RBP7.82□□□□□ -1.16
LRRC28-220ENST00000561253 ZNF765Q7L2R6 523 aa7.82□□□□□ -1.16
LRRC28-220ENST00000561253 FAM178BQ8IXR5 827 aa7.82□□□□□ -1.16
LRRC28-220ENST00000561253 RNF141Q8WVD5 230 aa7.82□□□□□ -1.16
LRRC28-220ENST00000561253 COX4I2Q96KJ9 171 aa7.82□□□□□ -1.16
LRRC28-220ENST00000561253 ZNF512BQ96KM6 892 aaPredicted RBP7.82□□□□□ -1.16
LRRC28-220ENST00000561253 ASPNQ9BXN1 380 aa7.82□□□□□ -1.16
LRRC28-220ENST00000561253 MKRN2Q9H000 416 aaKnown RBP7.82□□□□□ -1.16
LRRC28-220ENST00000561253 FAM86C1Q9NVL1 165 aa7.82□□□□□ -1.16
LRRC28-220ENST00000561253 WDR64B1ANS9 1081 aa7.81□□□□□ -1.16
LRRC28-220ENST00000561253 KCNQ2O43526 872 aa7.81□□□□□ -1.16
LRRC28-220ENST00000561253 GJB6O95452 261 aa7.81□□□□□ -1.16
LRRC28-220ENST00000561253 IGHA1P01876 353 aa7.81□□□□□ -1.16
LRRC28-220ENST00000561253 F13BP05160 661 aa7.81□□□□□ -1.16
LRRC28-220ENST00000561253 BMS1Q14692 1282 aaKnown RBP7.81□□□□□ -1.16
LRRC28-220ENST00000561253 NFE2L2Q16236 605 aa7.81□□□□□ -1.16
LRRC28-220ENST00000561253 RSPO4Q2I0M5 234 aaPredicted RBP7.81□□□□□ -1.16
LRRC28-220ENST00000561253 NKAPLQ5M9Q1 402 aa7.81□□□□□ -1.16
LRRC28-220ENST00000561253 SFRP5Q5T4F7 317 aa7.81□□□□□ -1.16
LRRC28-220ENST00000561253 NBPF12Q5TAG4 269 aaPredicted RBP7.81□□□□□ -1.16
LRRC28-220ENST00000561253 TDRD10Q5VZ19 366 aaKnown RBP7.81□□□□□ -1.16
LRRC28-220ENST00000561253 KIAA1211LQ6NV74 962 aa7.81□□□□□ -1.16
LRRC28-220ENST00000561253 ZNF530Q6P9A1 599 aaPredicted RBP7.81□□□□□ -1.16
LRRC28-220ENST00000561253 CCDC144CPQ8IYA2 1237 aa7.81□□□□□ -1.16
LRRC28-220ENST00000561253 IFNL2Q8IZJ0 200 aa7.81□□□□□ -1.16
LRRC28-220ENST00000561253 SHISA5Q8N114 240 aa7.81□□□□□ -1.16
LRRC28-220ENST00000561253 MICAL1Q8TDZ2 1067 aa7.81□□□□□ -1.16
LRRC28-220ENST00000561253 SMARCC1Q92922 1105 aaPredicted RBP7.81□□□□□ -1.16
LRRC28-220ENST00000561253 SRPK1Q96SB4 655 aaKnown RBP7.81□□□□□ -1.16
LRRC28-220ENST00000561253 METTL22Q9BUU2 404 aaPredicted RBP7.81□□□□□ -1.16
LRRC28-220ENST00000561253 OSBPL1AQ9BXW6 950 aa7.81□□□□□ -1.16
LRRC28-220ENST00000561253 TNS1Q9HBL0 1735 aaKnown RBP7.81□□□□□ -1.16
LRRC28-220ENST00000561253 SBF2Q86WG5 1849 aa7.8□□□□□ -1.16
LRRC28-220ENST00000561253 B2RBV5 119 aa7.8□□□□□ -1.16
LRRC28-220ENST00000561253 CBX7O95931 251 aa7.8□□□□□ -1.16
LRRC28-220ENST00000561253 TP53P04637 393 aaPredicted RBP7.8□□□□□ -1.16
LRRC28-220ENST00000561253 ARHGAP27Q6ZUM4 889 aa7.8□□□□□ -1.16
LRRC28-220ENST00000561253 PPFIBP1Q86W92 1011 aa7.8□□□□□ -1.16
LRRC28-220ENST00000561253 IL17REQ8NFR9 667 aa7.8□□□□□ -1.16
LRRC28-220ENST00000561253 SHKBP1Q8TBC3 707 aa7.8□□□□□ -1.16
LRRC28-220ENST00000561253 MKL1Q969V6 931 aa7.8□□□□□ -1.16
LRRC28-220ENST00000561253 MAP3K5Q99683 1374 aa7.8□□□□□ -1.16
LRRC28-220ENST00000561253 NHSQ6T4R5 1651 aa7.79□□□□□ -1.16
LRRC28-220ENST00000561253 GNAT3A8MTJ3 354 aa7.79□□□□□ -1.16
LRRC28-220ENST00000561253 C9IYK1 514 aa7.79□□□□□ -1.16
LRRC28-220ENST00000561253 RNMTO43148 476 aaKnown RBP7.79□□□□□ -1.16
LRRC28-220ENST00000561253 DYRK3O43781 588 aa7.79□□□□□ -1.16
LRRC28-220ENST00000561253 TMPOP42166 694 aaKnown RBP7.79□□□□□ -1.16
LRRC28-220ENST00000561253 WDR43Q15061 677 aaKnown RBP eCLIP7.79□□□□□ -1.16
LRRC28-220ENST00000561253 CCDC146Q8IYE0 955 aa7.79□□□□□ -1.16
LRRC28-220ENST00000561253 KLHL6Q8WZ60 621 aa7.79□□□□□ -1.16
LRRC28-220ENST00000561253 PIGBQ92521 554 aa7.79□□□□□ -1.16
LRRC28-220ENST00000561253 RUNDC1Q96C34 613 aa7.79□□□□□ -1.16
LRRC28-220ENST00000561253 MRFAP1L1Q96HT8 127 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms