RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 LCTP09848 1927 aa10.55□□□□□ -0.72
LDLR-210ENST00000559340 MEIS2O14770 477 aa10.55□□□□□ -0.72
LDLR-210ENST00000559340 STAM2O75886 525 aa10.55□□□□□ -0.72
LDLR-210ENST00000559340 ECM2O94769 699 aaPredicted RBP10.55□□□□□ -0.72
LDLR-210ENST00000559340 CYP2B6P20813 491 aa10.55□□□□□ -0.72
LDLR-210ENST00000559340 HOXA13P31271 388 aaPredicted RBP10.55□□□□□ -0.72
LDLR-210ENST00000559340 FLT3LGP49771 235 aa10.55□□□□□ -0.72
LDLR-210ENST00000559340 MFSD14CQ5VZR4 134 aa10.55□□□□□ -0.72
LDLR-210ENST00000559340 OLFML2BQ68BL8 750 aa10.55□□□□□ -0.72
LDLR-210ENST00000559340 TYW1BQ6NUM6 668 aa10.55□□□□□ -0.72
LDLR-210ENST00000559340 USP17L6PQ6QN14 398 aa10.55□□□□□ -0.72
LDLR-210ENST00000559340 PXYLP1Q8TE99 480 aa10.55□□□□□ -0.72
LDLR-210ENST00000559340 TBC1D5Q92609 795 aa10.55□□□□□ -0.72
LDLR-210ENST00000559340 USP6NLQ92738 828 aa10.55□□□□□ -0.72
LDLR-210ENST00000559340 TAAR1Q96RJ0 339 aa10.55□□□□□ -0.72
LDLR-210ENST00000559340 ARHGAP39Q9C0H5 1083 aa10.55□□□□□ -0.72
LDLR-210ENST00000559340 BIN2Q9UBW5 565 aaPredicted RBP10.55□□□□□ -0.72
LDLR-210ENST00000559340 PCDHA6Q9UN73 950 aa10.55□□□□□ -0.72
LDLR-210ENST00000559340 PCDHA8Q9Y5H6 950 aa10.55□□□□□ -0.72
LDLR-210ENST00000559340 ZSWIM8A7E2V4 1837 aa10.54□□□□□ -0.72
LDLR-210ENST00000559340 OPLAHO14841 1288 aa10.54□□□□□ -0.72
LDLR-210ENST00000559340 STX6O43752 255 aa10.54□□□□□ -0.72
LDLR-210ENST00000559340 COBLO75128 1261 aa10.54□□□□□ -0.72
LDLR-210ENST00000559340 PGK2P07205 417 aa10.54□□□□□ -0.72
LDLR-210ENST00000559340 TAL1P17542 331 aaPredicted RBP10.54□□□□□ -0.72
LDLR-210ENST00000559340 SYT1P21579 422 aa10.54□□□□□ -0.72
LDLR-210ENST00000559340 CCND2P30279 289 aa10.54□□□□□ -0.72
LDLR-210ENST00000559340 ZNF76P36508 570 aa10.54□□□□□ -0.72
LDLR-210ENST00000559340 CLK2P49760 499 aaKnown RBP10.54□□□□□ -0.72
LDLR-210ENST00000559340 ALDH5A1P51649 535 aaPredicted RBP10.54□□□□□ -0.72
LDLR-210ENST00000559340 FOSBP53539 338 aa10.54□□□□□ -0.72
LDLR-210ENST00000559340 GUCY1B3Q02153 619 aa10.54□□□□□ -0.72
LDLR-210ENST00000559340 PRKCZQ05513 592 aa10.54□□□□□ -0.72
LDLR-210ENST00000559340 PDE4DQ08499 809 aa10.54□□□□□ -0.72
LDLR-210ENST00000559340 NONOQ15233 471 aaKnown RBP eCLIP10.54□□□□□ -0.72
LDLR-210ENST00000559340 STXBP2Q15833 593 aa10.54□□□□□ -0.72
LDLR-210ENST00000559340 UBE2SQ16763 222 aa10.54□□□□□ -0.72
LDLR-210ENST00000559340 JAKMIP3Q5VZ66 844 aa10.54□□□□□ -0.72
LDLR-210ENST00000559340 MCTP1Q6DN14 999 aa10.54□□□□□ -0.72
LDLR-210ENST00000559340 SLC30A10Q6XR72 485 aa10.54□□□□□ -0.72
LDLR-210ENST00000559340 OTOP1Q7RTM1 612 aa10.54□□□□□ -0.72
LDLR-210ENST00000559340 DIS3L2Q8IYB7 885 aaKnown RBP10.54□□□□□ -0.72
LDLR-210ENST00000559340 SPRYD3Q8NCJ5 442 aa10.54□□□□□ -0.72
LDLR-210ENST00000559340 SLAIN1Q8ND83 568 aa10.54□□□□□ -0.72
LDLR-210ENST00000559340 ANO3Q9BYT9 981 aa10.54□□□□□ -0.72
LDLR-210ENST00000559340 PXMP2Q9NR77 195 aa10.54□□□□□ -0.72
LDLR-210ENST00000559340 NRBP1Q9UHY1 535 aa10.54□□□□□ -0.72
LDLR-210ENST00000559340 NOL7Q9UMY1 257 aaKnown RBP10.54□□□□□ -0.72
LDLR-210ENST00000559340 SYNGAP1Q96PV0 1343 aa10.54□□□□□ -0.72
LDLR-210ENST00000559340 TCHHQ07283 1943 aa10.53□□□□□ -0.72
LDLR-210ENST00000559340 VPS37CA5D8V6 355 aaPredicted RBP10.53□□□□□ -0.72
LDLR-210ENST00000559340 ADCY3O60266 1144 aa10.53□□□□□ -0.72
LDLR-210ENST00000559340 EIF3JO75822 258 aaKnown RBP10.53□□□□□ -0.72
LDLR-210ENST00000559340 NR3C2P08235 984 aa10.53□□□□□ -0.72
LDLR-210ENST00000559340 CTGFP29279 349 aa10.53□□□□□ -0.72
LDLR-210ENST00000559340 USP11P51784 963 aa10.53□□□□□ -0.72
LDLR-210ENST00000559340 NUCB2P80303 420 aa10.53□□□□□ -0.72
LDLR-210ENST00000559340 CNTN2Q02246 1040 aa10.53□□□□□ -0.72
LDLR-210ENST00000559340 GNPTABQ3T906 1256 aa10.53□□□□□ -0.72
LDLR-210ENST00000559340 PRPF38BQ5VTL8 546 aaKnown RBP10.53□□□□□ -0.72
LDLR-210ENST00000559340 KCNV1Q6PIU1 500 aa10.53□□□□□ -0.72
LDLR-210ENST00000559340 MAMDC4Q6UXC1 1216 aa10.53□□□□□ -0.72
LDLR-210ENST00000559340 MAML3Q96JK9 1138 aa10.53□□□□□ -0.72
LDLR-210ENST00000559340 IPO9Q96P70 1041 aaKnown RBP10.53□□□□□ -0.72
LDLR-210ENST00000559340 TINF2Q9BSI4 451 aa10.53□□□□□ -0.72
LDLR-210ENST00000559340 ZSCAN16Q9H4T2 348 aaPredicted RBP10.53□□□□□ -0.72
LDLR-210ENST00000559340 GABRQQ9UN88 632 aa10.53□□□□□ -0.72
LDLR-210ENST00000559340 CNPY2Q9Y2B0 182 aa10.53□□□□□ -0.72
LDLR-210ENST00000559340 PTPN22Q9Y2R2 807 aa10.53□□□□□ -0.72
LDLR-210ENST00000559340 SOWAHBA6NEL2 793 aa10.52□□□□□ -0.73
LDLR-210ENST00000559340 BTBD18B2RXH4 712 aa10.52□□□□□ -0.73
LDLR-210ENST00000559340 MAFGO15525 162 aa10.52□□□□□ -0.73
LDLR-210ENST00000559340 DTNBO60941 627 aa10.52□□□□□ -0.73
LDLR-210ENST00000559340 CYP3A4P08684 503 aa10.52□□□□□ -0.73
LDLR-210ENST00000559340 MYCLP12524 364 aaPredicted RBP10.52□□□□□ -0.73
LDLR-210ENST00000559340 EIF2AK2P19525 551 aaKnown RBP10.52□□□□□ -0.73
LDLR-210ENST00000559340 U2AF2P26368 475 aaKnown RBP eCLIP10.52□□□□□ -0.73
LDLR-210ENST00000559340 SREBF1P36956 1147 aa10.52□□□□□ -0.73
LDLR-210ENST00000559340 TRAPPC10P48553 1259 aa10.52□□□□□ -0.73
LDLR-210ENST00000559340 UBXN2AP68543 259 aa10.52□□□□□ -0.73
LDLR-210ENST00000559340 PGM5Q15124 567 aa10.52□□□□□ -0.73
LDLR-210ENST00000559340 PCNX4Q63HM2 1172 aa10.52□□□□□ -0.73
LDLR-210ENST00000559340 FBXO46Q6PJ61 603 aaPredicted RBP10.52□□□□□ -0.73
LDLR-210ENST00000559340 BRAPQ7Z569 592 aa10.52□□□□□ -0.73
LDLR-210ENST00000559340 NLRX1Q86UT6 975 aa10.52□□□□□ -0.73
LDLR-210ENST00000559340 VSIG10LQ86VR7 867 aa10.52□□□□□ -0.73
LDLR-210ENST00000559340 NPLOC4Q8TAT6 608 aa10.52□□□□□ -0.73
LDLR-210ENST00000559340 MORC4Q8TE76 937 aa10.52□□□□□ -0.73
LDLR-210ENST00000559340 CDHR1Q96JP9 859 aa10.52□□□□□ -0.73
LDLR-210ENST00000559340 PDCD2LQ9BRP1 358 aa10.52□□□□□ -0.73
LDLR-210ENST00000559340 ABHD16BQ9H3Z7 469 aa10.52□□□□□ -0.73
LDLR-210ENST00000559340 VTA1Q9NP79 307 aa10.52□□□□□ -0.73
LDLR-210ENST00000559340 GJB4Q9NTQ9 266 aa10.52□□□□□ -0.73
LDLR-210ENST00000559340 TMEM260Q9NX78 707 aa10.52□□□□□ -0.73
LDLR-210ENST00000559340 MYH15Q9Y2K3 1946 aa10.52□□□□□ -0.73
LDLR-210ENST00000559340 FRMPD4Q14CM0 1322 aa10.52□□□□□ -0.73
LDLR-210ENST00000559340 RPTORQ8N122 1335 aa10.52□□□□□ -0.73
LDLR-210ENST00000559340 MYH9P35579 1960 aaKnown RBP10.52□□□□□ -0.73
LDLR-210ENST00000559340 KAT6AQ92794 2004 aa10.51□□□□□ -0.73
LDLR-210ENST00000559340 PDE4DIPQ5VU43 2346 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms