RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 PNMA6FA0A0J9YX94 578 aa13.74□□□□□ -0.21
VRK1-204ENST00000555351 A6NJR5 290 aa13.74□□□□□ -0.21
VRK1-204ENST00000555351 OPLAHO14841 1288 aa13.74□□□□□ -0.21
VRK1-204ENST00000555351 PRC1O43663 620 aa13.74□□□□□ -0.21
VRK1-204ENST00000555351 TIMP1P01033 207 aa13.74□□□□□ -0.21
VRK1-204ENST00000555351 CD4P01730 458 aa13.74□□□□□ -0.21
VRK1-204ENST00000555351 CALM1P0DP23 149 aa13.74□□□□□ -0.21
VRK1-204ENST00000555351 CALM2P0DP24 149 aa13.74□□□□□ -0.21
VRK1-204ENST00000555351 CALM3P0DP25 149 aa13.74□□□□□ -0.21
VRK1-204ENST00000555351 GNAQP50148 359 aa13.74□□□□□ -0.21
VRK1-204ENST00000555351 BEX3Q00994 111 aa13.74□□□□□ -0.21
VRK1-204ENST00000555351 TTLL4Q14679 1199 aa13.74□□□□□ -0.21
VRK1-204ENST00000555351 TSGA10IPQ3SY00 556 aa13.74□□□□□ -0.21
VRK1-204ENST00000555351 CREB3L3Q68CJ9 461 aa13.74□□□□□ -0.21
VRK1-204ENST00000555351 FAM109BQ6ICB4 259 aaPredicted RBP13.74□□□□□ -0.21
VRK1-204ENST00000555351 CXCL17Q6UXB2 119 aa13.74□□□□□ -0.21
VRK1-204ENST00000555351 FAM126BQ8IXS8 530 aa13.74□□□□□ -0.21
VRK1-204ENST00000555351 TAAR1Q96RJ0 339 aa13.74□□□□□ -0.21
VRK1-204ENST00000555351 ANO2Q9NQ90 1003 aa13.74□□□□□ -0.21
VRK1-204ENST00000555351 PCDHA1Q9Y5I3 950 aa13.74□□□□□ -0.21
VRK1-204ENST00000555351 CYTH3O43739 400 aa13.73□□□□□ -0.21
VRK1-204ENST00000555351 PPP1R11O60927 126 aaPredicted RBP13.73□□□□□ -0.21
VRK1-204ENST00000555351 CDC45O75419 566 aa13.73□□□□□ -0.21
VRK1-204ENST00000555351 EIF3JO75822 258 aaKnown RBP13.73□□□□□ -0.21
VRK1-204ENST00000555351 ITGA7Q13683 1181 aa13.73□□□□□ -0.21
VRK1-204ENST00000555351 CCDC62Q6P9F0 684 aa13.73□□□□□ -0.21
VRK1-204ENST00000555351 ZNF654Q8IZM8 581 aa13.73□□□□□ -0.21
VRK1-204ENST00000555351 CTCFLQ8NI51 663 aaPredicted RBP13.73□□□□□ -0.21
VRK1-204ENST00000555351 TBC1D5Q92609 795 aa13.73□□□□□ -0.21
VRK1-204ENST00000555351 LRCH3Q96II8 777 aa13.73□□□□□ -0.21
VRK1-204ENST00000555351 SENP2Q9HC62 589 aa13.73□□□□□ -0.21
VRK1-204ENST00000555351 PXMP2Q9NR77 195 aa13.73□□□□□ -0.21
VRK1-204ENST00000555351 COL20A1Q9P218 1284 aa13.73□□□□□ -0.21
VRK1-204ENST00000555351 DDX49Q9Y6V7 483 aaKnown RBP13.73□□□□□ -0.21
VRK1-204ENST00000555351 KIAA1217Q5T5P2 1943 aa13.72□□□□□ -0.21
VRK1-204ENST00000555351 SH2B2O14492 632 aaPredicted RBP13.72□□□□□ -0.21
VRK1-204ENST00000555351 CFBP00751 764 aa13.72□□□□□ -0.21
VRK1-204ENST00000555351 TXNP10599 105 aaKnown RBP13.72□□□□□ -0.21
VRK1-204ENST00000555351 ITGB8P26012 769 aa13.72□□□□□ -0.21
VRK1-204ENST00000555351 PURAQ00577 322 aaKnown RBP13.72□□□□□ -0.21
VRK1-204ENST00000555351 FPGSQ05932 587 aa13.72□□□□□ -0.21
VRK1-204ENST00000555351 SLC35G1Q2M3R5 365 aa13.72□□□□□ -0.21
VRK1-204ENST00000555351 ARHGEF16Q5VV41 709 aa13.72□□□□□ -0.21
VRK1-204ENST00000555351 MFSD5Q6N075 450 aa13.72□□□□□ -0.21
VRK1-204ENST00000555351 KCNV1Q6PIU1 500 aa13.72□□□□□ -0.21
VRK1-204ENST00000555351 CHST3Q7LGC8 479 aa13.72□□□□□ -0.21
VRK1-204ENST00000555351 SGMS1Q86VZ5 419 aa13.72□□□□□ -0.21
VRK1-204ENST00000555351 OR6J1Q8NGC5 347 aa13.72□□□□□ -0.21
VRK1-204ENST00000555351 CCDC136Q96JN2 1154 aa13.72□□□□□ -0.21
VRK1-204ENST00000555351 PIGSQ96S52 555 aa13.72□□□□□ -0.21
VRK1-204ENST00000555351 GRIN2DO15399 1336 aa13.71□□□□□ -0.21
VRK1-204ENST00000555351 CCDC69A6NI79 296 aa13.71□□□□□ -0.21
VRK1-204ENST00000555351 GCOM1H8Y6P7 765 aaPredicted RBP13.71□□□□□ -0.21
VRK1-204ENST00000555351 NR3C2P08235 984 aa13.71□□□□□ -0.21
VRK1-204ENST00000555351 SUPT20HL2P0C7V6 817 aa13.71□□□□□ -0.21
VRK1-204ENST00000555351 POLR2MP0CAP2 368 aa13.71□□□□□ -0.21
VRK1-204ENST00000555351 PTPN11Q06124 597 aaPredicted RBP13.71□□□□□ -0.21
VRK1-204ENST00000555351 PPIGQ13427 754 aaKnown RBP eCLIP13.71□□□□□ -0.217e-6■■□□□ 12.3
VRK1-204ENST00000555351 KRT32Q14532 448 aa13.71□□□□□ -0.21
VRK1-204ENST00000555351 SHHQ15465 462 aa13.71□□□□□ -0.21
VRK1-204ENST00000555351 TMEM63BQ5T3F8 832 aa13.71□□□□□ -0.21
VRK1-204ENST00000555351 HOMER1Q86YM7 354 aa13.71□□□□□ -0.21
VRK1-204ENST00000555351 TEX2Q8IWB9 1127 aa13.71□□□□□ -0.21
VRK1-204ENST00000555351 EMID1Q96A84 441 aaPredicted RBP13.71□□□□□ -0.21
VRK1-204ENST00000555351 PDCD2LQ9BRP1 358 aa13.71□□□□□ -0.21
VRK1-204ENST00000555351 MTG1Q9BT17 334 aaPredicted RBP13.71□□□□□ -0.21
VRK1-204ENST00000555351 GPHNQ9NQX3 736 aaPredicted RBP13.71□□□□□ -0.21
VRK1-204ENST00000555351 STAM2O75886 525 aa13.7□□□□□ -0.22
VRK1-204ENST00000555351 GH1P01241 217 aa13.7□□□□□ -0.22
VRK1-204ENST00000555351 HMGB1P09429 215 aaKnown RBP13.7□□□□□ -0.22
VRK1-204ENST00000555351 TGFB3P10600 412 aa13.7□□□□□ -0.22
VRK1-204ENST00000555351 SMAD3P84022 425 aaKnown RBP13.7□□□□□ -0.22
VRK1-204ENST00000555351 NFRKBQ6P4R8 1299 aa13.7□□□□□ -0.22
VRK1-204ENST00000555351 VSIG10LQ86VR7 867 aa13.7□□□□□ -0.22
VRK1-204ENST00000555351 TMEM199Q8N511 208 aa13.7□□□□□ -0.22
VRK1-204ENST00000555351 RRP36Q96EU6 259 aaKnown RBP13.7□□□□□ -0.22
VRK1-204ENST00000555351 FRMPD4Q14CM0 1322 aa13.69□□□□□ -0.22
VRK1-204ENST00000555351 SCN10AQ9Y5Y9 1956 aa13.69□□□□□ -0.22
VRK1-204ENST00000555351 PIK3CDO00329 1044 aa13.69□□□□□ -0.22
VRK1-204ENST00000555351 EPB41L2O43491 1005 aaKnown RBP13.69□□□□□ -0.22
VRK1-204ENST00000555351 EIF2AK2P19525 551 aaKnown RBP13.69□□□□□ -0.22
VRK1-204ENST00000555351 RCAN1P53805 252 aa13.69□□□□□ -0.22
VRK1-204ENST00000555351 ARHGAP1Q07960 439 aa13.69□□□□□ -0.22
VRK1-204ENST00000555351 C9orf50Q5SZB4 431 aa13.69□□□□□ -0.22
VRK1-204ENST00000555351 NFXL1Q6ZNB6 911 aa13.69□□□□□ -0.22
VRK1-204ENST00000555351 NEK1Q96PY6 1258 aa13.69□□□□□ -0.22
VRK1-204ENST00000555351 ALDH8A1Q9H2A2 487 aaPredicted RBP13.69□□□□□ -0.22
VRK1-204ENST00000555351 SEC63Q9UGP8 760 aaKnown RBP13.69□□□□□ -0.22
VRK1-204ENST00000555351 DDX41Q9UJV9 622 aaKnown RBP13.69□□□□□ -0.22
VRK1-204ENST00000555351 SLC12A7Q9Y666 1083 aa13.69□□□□□ -0.22
VRK1-204ENST00000555351 LAMA3Q16787 3333 aa13.69□□□□□ -0.22
VRK1-204ENST00000555351 ARIH2O95376 493 aa13.68□□□□□ -0.22
VRK1-204ENST00000555351 MYL3P08590 195 aa13.68□□□□□ -0.22
VRK1-204ENST00000555351 PTGS1P23219 599 aa13.68□□□□□ -0.22
VRK1-204ENST00000555351 CCND2P30279 289 aa13.68□□□□□ -0.22
VRK1-204ENST00000555351 EXOSC10Q01780 885 aaKnown RBP13.68□□□□□ -0.22
VRK1-204ENST00000555351 LAMC2Q13753 1193 aa13.68□□□□□ -0.22
VRK1-204ENST00000555351 PGM5Q15124 567 aa13.68□□□□□ -0.22
VRK1-204ENST00000555351 XRRA1Q6P2D8 792 aa13.68□□□□□ -0.22
VRK1-204ENST00000555351 SYNE3Q6ZMZ3 975 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms