RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 PRPF40AO75400 957 aaKnown RBP6.04□□□□□ -1.44
CLIP1-217ENST00000543205 MCMDC2Q4G0Z9 681 aa6.04□□□□□ -1.44
CLIP1-217ENST00000543205 BMP2KLQ5H9B9 411 aa6.04□□□□□ -1.44
CLIP1-217ENST00000543205 ODR4Q5SWX8 454 aa6.04□□□□□ -1.44
CLIP1-217ENST00000543205 SH3PXD2AQ5TCZ1 1133 aa6.04□□□□□ -1.44
CLIP1-217ENST00000543205 ZNF295-AS1Q8N0V1 137 aa6.04□□□□□ -1.44
CLIP1-217ENST00000543205 STAG2Q8N3U4 1231 aa6.04□□□□□ -1.44
CLIP1-217ENST00000543205 TMEM151AQ8N4L1 468 aa6.04□□□□□ -1.44
CLIP1-217ENST00000543205 C2orf69Q8N8R5 385 aa6.04□□□□□ -1.44
CLIP1-217ENST00000543205 RBCK1Q9BYM8 510 aa6.04□□□□□ -1.44
CLIP1-217ENST00000543205 OSBPL5Q9H0X9 879 aaPredicted RBP6.04□□□□□ -1.44
CLIP1-217ENST00000543205 KANSL2Q9H9L4 492 aa6.04□□□□□ -1.44
CLIP1-217ENST00000543205 DDX4Q9NQI0 724 aaKnown RBP6.04□□□□□ -1.44
CLIP1-217ENST00000543205 SLC4A4Q9Y6R1 1079 aa6.04□□□□□ -1.44
CLIP1-217ENST00000543205 FLT1P17948 1338 aa6.04□□□□□ -1.44
CLIP1-217ENST00000543205 DOCK2Q92608 1830 aa6.04□□□□□ -1.44
CLIP1-217ENST00000543205 TNFRSF10BO14763 440 aa6.04□□□□□ -1.44
CLIP1-217ENST00000543205 GPAA1O43292 621 aa6.04□□□□□ -1.44
CLIP1-217ENST00000543205 APPP05067 770 aa6.04□□□□□ -1.44
CLIP1-217ENST00000543205 GNAT2P19087 354 aa6.04□□□□□ -1.44
CLIP1-217ENST00000543205 PSMD2Q13200 908 aa6.04□□□□□ -1.44
CLIP1-217ENST00000543205 NMIQ13287 307 aaPredicted RBP6.04□□□□□ -1.44
CLIP1-217ENST00000543205 SERINC3Q13530 473 aa6.04□□□□□ -1.44
CLIP1-217ENST00000543205 PRKG1Q13976 671 aa6.04□□□□□ -1.44
CLIP1-217ENST00000543205 NBPF12Q5TAG4 269 aaPredicted RBP6.04□□□□□ -1.44
CLIP1-217ENST00000543205 CWC27Q6UX04 472 aaKnown RBP6.04□□□□□ -1.44
CLIP1-217ENST00000543205 ARMC9Q7Z3E5 817 aa6.04□□□□□ -1.44
CLIP1-217ENST00000543205 ZFPM1Q8IX07 1006 aa6.04□□□□□ -1.44
CLIP1-217ENST00000543205 RUFY2Q8WXA3 655 aa6.04□□□□□ -1.44
CLIP1-217ENST00000543205 FAM227BQ96M60 508 aa6.04□□□□□ -1.44
CLIP1-217ENST00000543205 CSRNP1Q96S65 589 aa6.04□□□□□ -1.44
CLIP1-217ENST00000543205 STRBPQ96SI9 672 aaKnown RBP6.04□□□□□ -1.44
CLIP1-217ENST00000543205 SEC62Q99442 399 aaKnown RBP6.04□□□□□ -1.44
CLIP1-217ENST00000543205 DHX36Q9H2U1 1008 aaKnown RBP6.04□□□□□ -1.44
CLIP1-217ENST00000543205 GBA2Q9HCG7 927 aaPredicted RBP6.04□□□□□ -1.44
CLIP1-217ENST00000543205 TIMMDC1Q9NPL8 285 aa6.04□□□□□ -1.44
CLIP1-217ENST00000543205 ATP8A2Q9NTI2 1148 aa6.04□□□□□ -1.44
CLIP1-217ENST00000543205 SAP30BPQ9UHR5 308 aaKnown RBP6.04□□□□□ -1.44
CLIP1-217ENST00000543205 ABT1Q9ULW3 272 aaKnown RBP6.04□□□□□ -1.44
CLIP1-217ENST00000543205 MYO5AQ9Y4I1 1855 aaKnown RBP6.03□□□□□ -1.44
CLIP1-217ENST00000543205 A0A0D9SFI3 127 aa6.03□□□□□ -1.44
CLIP1-217ENST00000543205 DDTLA6NHG4 134 aaPredicted RBP6.03□□□□□ -1.44
CLIP1-217ENST00000543205 PRKAB2O43741 272 aa6.03□□□□□ -1.44
CLIP1-217ENST00000543205 KIF4AO95239 1232 aa6.03□□□□□ -1.44
CLIP1-217ENST00000543205 POLR3DP05423 398 aaPredicted RBP6.03□□□□□ -1.44
CLIP1-217ENST00000543205 HLA-DOAP06340 250 aa6.03□□□□□ -1.44
CLIP1-217ENST00000543205 IREB2P48200 963 aaKnown RBP6.03□□□□□ -1.44
CLIP1-217ENST00000543205 FKBP1BP68106 108 aa6.03□□□□□ -1.44
CLIP1-217ENST00000543205 DSC3Q14574 896 aa6.03□□□□□ -1.44
CLIP1-217ENST00000543205 ENOX2Q16206 610 aaKnown RBP6.03□□□□□ -1.44
CLIP1-217ENST00000543205 CST9Q5W186 159 aa6.03□□□□□ -1.44
CLIP1-217ENST00000543205 DCAF15Q66K64 600 aa6.03□□□□□ -1.44
CLIP1-217ENST00000543205 CASC1Q6TDU7 716 aa6.03□□□□□ -1.44
CLIP1-217ENST00000543205 AMOTL1Q8IY63 956 aa6.03□□□□□ -1.44
CLIP1-217ENST00000543205 SDR42E1Q8WUS8 393 aa6.03□□□□□ -1.44
CLIP1-217ENST00000543205 TEPSINQ96N21 525 aa6.03□□□□□ -1.44
CLIP1-217ENST00000543205 NACAP1Q9BZK3 213 aa6.03□□□□□ -1.44
CLIP1-217ENST00000543205 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.03□□□□□ -1.44
CLIP1-217ENST00000543205 MCM9Q9NXL9 1143 aa6.03□□□□□ -1.44
CLIP1-217ENST00000543205 PALD1Q9ULE6 856 aa6.03□□□□□ -1.44
CLIP1-217ENST00000543205 HCN4Q9Y3Q4 1203 aa6.03□□□□□ -1.44
CLIP1-217ENST00000543205 RPAP1Q9BWH6 1393 aaPredicted RBP6.03□□□□□ -1.44
CLIP1-217ENST00000543205 ECM29Q5VYK3 1845 aa6.03□□□□□ -1.44
CLIP1-217ENST00000543205 CHMLP26374 656 aa6.03□□□□□ -1.44
CLIP1-217ENST00000543205 TXLNAP40222 546 aa6.03□□□□□ -1.44
CLIP1-217ENST00000543205 SLC4A8Q2Y0W8 1093 aa6.03□□□□□ -1.44
CLIP1-217ENST00000543205 WDR44Q5JSH3 913 aa6.03□□□□□ -1.44
CLIP1-217ENST00000543205 KRBA2Q6ZNG9 492 aa6.03□□□□□ -1.44
CLIP1-217ENST00000543205 CCDC129Q6ZRS4 1044 aa6.03□□□□□ -1.44
CLIP1-217ENST00000543205 MIGA2Q7L4E1 593 aa6.03□□□□□ -1.44
CLIP1-217ENST00000543205 TTC6Q86TZ1 520 aa6.03□□□□□ -1.44
CLIP1-217ENST00000543205 CRACR2BQ8N4Y2 399 aaPredicted RBP6.03□□□□□ -1.44
CLIP1-217ENST00000543205 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.03□□□□□ -1.44
CLIP1-217ENST00000543205 DCP1AQ9NPI6 582 aaPredicted RBP6.03□□□□□ -1.44
CLIP1-217ENST00000543205 PI4KBQ9UBF8 816 aa6.03□□□□□ -1.44
CLIP1-217ENST00000543205 ANGEL1Q9UNK9 670 aaKnown RBP6.03□□□□□ -1.44
CLIP1-217ENST00000543205 CCDC171Q6TFL3 1326 aa6.02□□□□□ -1.45
CLIP1-217ENST00000543205 ATRNL1Q5VV63 1379 aa6.02□□□□□ -1.45
CLIP1-217ENST00000543205 GSG1L2A8MUP6 293 aa6.02□□□□□ -1.45
CLIP1-217ENST00000543205 USP2O75604 605 aaPredicted RBP6.02□□□□□ -1.45
CLIP1-217ENST00000543205 IGHA2P01877 340 aa6.02□□□□□ -1.45
CLIP1-217ENST00000543205 CTSHP09668 335 aa6.02□□□□□ -1.45
CLIP1-217ENST00000543205 TDO2P48775 406 aa6.02□□□□□ -1.45
CLIP1-217ENST00000543205 NAA30Q147X3 362 aaPredicted RBP6.02□□□□□ -1.45
CLIP1-217ENST00000543205 PLEKHG4Q58EX7 1191 aa6.02□□□□□ -1.45
CLIP1-217ENST00000543205 FOXP4Q8IVH2 680 aaPredicted RBP6.02□□□□□ -1.45
CLIP1-217ENST00000543205 MTA3Q9BTC8 594 aa6.02□□□□□ -1.45
CLIP1-217ENST00000543205 ZNF341Q9BYN7 854 aa6.02□□□□□ -1.45
CLIP1-217ENST00000543205 PHACTR1Q9C0D0 580 aa6.02□□□□□ -1.45
CLIP1-217ENST00000543205 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.02□□□□□ -1.45
CLIP1-217ENST00000543205 SRA1Q9HD15 236 aaKnown RBP6.02□□□□□ -1.45
CLIP1-217ENST00000543205 POLR2AP24928 1970 aaKnown RBP6.02□□□□□ -1.45
CLIP1-217ENST00000543205 COL2A1P02458 1487 aaPredicted RBP6.01□□□□□ -1.45
CLIP1-217ENST00000543205 A0A1B0GTH6 734 aa6.01□□□□□ -1.45
CLIP1-217ENST00000543205 UBE2Q2LH0YL09 131 aa6.01□□□□□ -1.45
CLIP1-217ENST00000543205 CDC45O75419 566 aa6.01□□□□□ -1.45
CLIP1-217ENST00000543205 HUNKP57058 714 aa6.01□□□□□ -1.45
CLIP1-217ENST00000543205 EHHADHQ08426 723 aa6.01□□□□□ -1.45
CLIP1-217ENST00000543205 CTR9Q6PD62 1173 aa6.01□□□□□ -1.45
CLIP1-217ENST00000543205 MOB2Q70IA6 237 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms