RNA–Protein interactions for RNA: ENST00000540109.5

PTPRD-214, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRD, Length 6,210 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-214ENST00000540109 FAM84BQ96KN1 310 aaPredicted RBP6.66□□□□□ -1.34
PTPRD-214ENST00000540109 SEPT11Q9NVA2 429 aaKnown RBP6.66□□□□□ -1.34
PTPRD-214ENST00000540109 ETAA1Q9NY74 926 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 CTTNBP2NLQ9P2B4 639 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 DLEC1Q9Y238 1755 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 NEDD4P46934 1319 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 CASQ2O14958 399 aaPredicted RBP6.66□□□□□ -1.34
PTPRD-214ENST00000540109 TPP2P29144 1249 aaPredicted RBP6.66□□□□□ -1.34
PTPRD-214ENST00000540109 ZNF654Q8IZM8 581 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 PROCA1Q8NCQ7 364 aaPredicted RBP6.66□□□□□ -1.34
PTPRD-214ENST00000540109 HELBQ8NG08 1087 aaPredicted RBP6.66□□□□□ -1.34
PTPRD-214ENST00000540109 GSDMBQ8TAX9 411 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 USP6NLQ92738 828 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 HAUS1Q96CS2 278 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 RIOK1Q9BRS2 568 aaKnown RBP6.66□□□□□ -1.34
PTPRD-214ENST00000540109 NUP58Q9BVL2 599 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 C10orf71Q711Q0 1435 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 CCDC88AQ3V6T2 1871 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 CIB2O75838 187 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 ZRANB2O95218 330 aaKnown RBP eCLIP6.66□□□□□ -1.34
PTPRD-214ENST00000540109 PPP4CP60510 307 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 KCTD16Q68DU8 428 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 MYLK4Q86YV6 388 aaPredicted RBP6.66□□□□□ -1.34
PTPRD-214ENST00000540109 EGFL6Q8IUX8 553 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 NOSTRINQ8IVI9 506 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 FANCBQ8NB91 859 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 FERMT2Q96AC1 680 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 THOC1Q96FV9 657 aaKnown RBP6.66□□□□□ -1.34
PTPRD-214ENST00000540109 CRAMP1Q96RY5 1269 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 NAPGQ99747 312 aaPredicted RBP6.66□□□□□ -1.34
PTPRD-214ENST00000540109 NCOA5Q9HCD5 579 aaKnown RBP6.66□□□□□ -1.34
PTPRD-214ENST00000540109 PAIP2BQ9ULR5 123 aaKnown RBP6.66□□□□□ -1.34
PTPRD-214ENST00000540109 IKBKBO14920 756 aa6.65□□□□□ -1.34
PTPRD-214ENST00000540109 HNRNPCL1O60812 293 aaKnown RBP6.65□□□□□ -1.34
PTPRD-214ENST00000540109 MMP1P03956 469 aa6.65□□□□□ -1.34
PTPRD-214ENST00000540109 GKAP1Q5VSY0 366 aaPredicted RBP6.65□□□□□ -1.34
PTPRD-214ENST00000540109 TBC1D9BQ66K14 1250 aa6.65□□□□□ -1.34
PTPRD-214ENST00000540109 CYB5R4Q7L1T6 521 aa6.65□□□□□ -1.34
PTPRD-214ENST00000540109 SDCCAG8Q86SQ7 713 aaPredicted RBP6.65□□□□□ -1.34
PTPRD-214ENST00000540109 TEX9Q8N6V9 391 aa6.65□□□□□ -1.34
PTPRD-214ENST00000540109 KRI1Q8N9T8 703 aaKnown RBP6.65□□□□□ -1.34
PTPRD-214ENST00000540109 CCDC63Q8NA47 563 aa6.65□□□□□ -1.34
PTPRD-214ENST00000540109 ANKRD7Q92527 254 aa6.65□□□□□ -1.34
PTPRD-214ENST00000540109 ANKS1AQ92625 1134 aa6.65□□□□□ -1.34
PTPRD-214ENST00000540109 SPAG5Q96R06 1193 aa6.65□□□□□ -1.34
PTPRD-214ENST00000540109 TCP11L1Q9NUJ3 509 aa6.65□□□□□ -1.34
PTPRD-214ENST00000540109 PARP2Q9UGN5 583 aa6.65□□□□□ -1.34
PTPRD-214ENST00000540109 A0A1W2PRG0 241 aa6.65□□□□□ -1.34
PTPRD-214ENST00000540109 CFAP73A6NFT4 308 aa6.65□□□□□ -1.34
PTPRD-214ENST00000540109 ATP2A1O14983 1001 aa6.65□□□□□ -1.34
PTPRD-214ENST00000540109 EIF2S1P05198 315 aaKnown RBP6.65□□□□□ -1.34
PTPRD-214ENST00000540109 TROVE2P10155 538 aaKnown RBP eCLIP6.65□□□□□ -1.34
PTPRD-214ENST00000540109 LAMB3Q13751 1172 aa6.65□□□□□ -1.34
PTPRD-214ENST00000540109 IFIT1BQ5T764 474 aaKnown RBP6.65□□□□□ -1.34
PTPRD-214ENST00000540109 MICU3Q86XE3 530 aa6.65□□□□□ -1.34
PTPRD-214ENST00000540109 DGKHQ86XP1 1220 aa6.65□□□□□ -1.34
PTPRD-214ENST00000540109 FMR1NBQ8N0W7 255 aaPredicted RBP6.65□□□□□ -1.34
PTPRD-214ENST00000540109 PDCD7Q8N8D1 485 aaKnown RBP6.65□□□□□ -1.34
PTPRD-214ENST00000540109 ZC3H15Q8WU90 426 aaKnown RBP6.65□□□□□ -1.34
PTPRD-214ENST00000540109 VIPAS39Q9H9C1 493 aa6.65□□□□□ -1.34
PTPRD-214ENST00000540109 KCNK9Q9NPC2 374 aa6.65□□□□□ -1.34
PTPRD-214ENST00000540109 RHBDL2Q9NX52 303 aa6.65□□□□□ -1.34
PTPRD-214ENST00000540109 TCHHQ07283 1943 aa6.65□□□□□ -1.34
PTPRD-214ENST00000540109 GMNNO75496 209 aa6.65□□□□□ -1.34
PTPRD-214ENST00000540109 SMARCA1P28370 1054 aa6.65□□□□□ -1.34
PTPRD-214ENST00000540109 AMPD3Q01432 767 aa6.65□□□□□ -1.34
PTPRD-214ENST00000540109 PRPF4BQ13523 1007 aaKnown RBP6.65□□□□□ -1.34
PTPRD-214ENST00000540109 NTRK3Q16288 839 aa6.65□□□□□ -1.34
PTPRD-214ENST00000540109 LONRF3Q496Y0 759 aa6.65□□□□□ -1.34
PTPRD-214ENST00000540109 ALS2CLQ60I27 953 aa6.65□□□□□ -1.34
PTPRD-214ENST00000540109 SUGP1Q8IWZ8 645 aaKnown RBP6.65□□□□□ -1.34
PTPRD-214ENST00000540109 PARD6BQ9BYG5 372 aa6.65□□□□□ -1.34
PTPRD-214ENST00000540109 PCDHA7Q9UN72 937 aa6.65□□□□□ -1.34
PTPRD-214ENST00000540109 TRIM37O94972 964 aa6.65□□□□□ -1.35
PTPRD-214ENST00000540109 LDHBP07195 334 aaKnown RBP6.65□□□□□ -1.35
PTPRD-214ENST00000540109 PDHA1P08559 390 aa6.65□□□□□ -1.35
PTPRD-214ENST00000540109 SKIP12755 728 aa6.65□□□□□ -1.35
PTPRD-214ENST00000540109 ZBTB16Q05516 673 aa6.65□□□□□ -1.35
PTPRD-214ENST00000540109 MYO1EQ12965 1108 aa6.65□□□□□ -1.35
PTPRD-214ENST00000540109 HIBCHQ6NVY1 386 aaPredicted RBP6.65□□□□□ -1.35
PTPRD-214ENST00000540109 SYCP3Q8IZU3 236 aa6.65□□□□□ -1.35
PTPRD-214ENST00000540109 CRACR2BQ8N4Y2 399 aaPredicted RBP6.65□□□□□ -1.35
PTPRD-214ENST00000540109 NSUN4Q96CB9 384 aaKnown RBP6.65□□□□□ -1.35
PTPRD-214ENST00000540109 OLFM3Q96PB7 478 aa6.65□□□□□ -1.35
PTPRD-214ENST00000540109 UIMC1Q96RL1 719 aa6.65□□□□□ -1.35
PTPRD-214ENST00000540109 TSG101Q99816 390 aa6.65□□□□□ -1.35
PTPRD-214ENST00000540109 ZSWIM5Q9P217 1185 aa6.65□□□□□ -1.35
PTPRD-214ENST00000540109 SNUPNO95149 360 aaKnown RBP6.65□□□□□ -1.35
PTPRD-214ENST00000540109 HOXA10P31260 410 aaPredicted RBP6.65□□□□□ -1.35
PTPRD-214ENST00000540109 HNRNPH1P31943 449 aaKnown RBP6.65□□□□□ -1.35
PTPRD-214ENST00000540109 GRIPAP1Q4V328 841 aa6.65□□□□□ -1.35
PTPRD-214ENST00000540109 KIAA0825Q8IV33 1275 aa6.65□□□□□ -1.35
PTPRD-214ENST00000540109 CCDC26Q8TAB7 109 aa6.65□□□□□ -1.35
PTPRD-214ENST00000540109 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.65□□□□□ -1.35
PTPRD-214ENST00000540109 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.65□□□□□ -1.35
PTPRD-214ENST00000540109 SLC26A6Q9BXS9 759 aa6.65□□□□□ -1.35
PTPRD-214ENST00000540109 PRDM16Q9HAZ2 1276 aa6.65□□□□□ -1.35
PTPRD-214ENST00000540109 CD248Q9HCU0 757 aa6.65□□□□□ -1.35
PTPRD-214ENST00000540109 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.65□□□□□ -1.35
PTPRD-214ENST00000540109 CACNA1SQ13698 1873 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms