RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 MYOGP15173 224 aa15.94■□□□□ 0.14
SS18-204ENST00000539244 POU3F3P20264 500 aaPredicted RBP15.94■□□□□ 0.14
SS18-204ENST00000539244 MRPL12P52815 198 aaKnown RBP15.94■□□□□ 0.14
SS18-204ENST00000539244 NMIQ13287 307 aaPredicted RBP15.94■□□□□ 0.14
SS18-204ENST00000539244 CCDC85BQ15834 202 aaPredicted RBP15.94■□□□□ 0.14
SS18-204ENST00000539244 MFSD6Q6ZSS7 791 aa15.94■□□□□ 0.14
SS18-204ENST00000539244 PHOSPHO2Q8TCD6 241 aa15.94■□□□□ 0.14
SS18-204ENST00000539244 XIRP2A4UGR9 3374 aa15.94■□□□□ 0.14
SS18-204ENST00000539244 IQCF3P0C7M6 154 aa15.93■□□□□ 0.14
SS18-204ENST00000539244 TXNP10599 105 aaKnown RBP15.93■□□□□ 0.14
SS18-204ENST00000539244 ACTN1P12814 892 aa15.93■□□□□ 0.14
SS18-204ENST00000539244 HAND2P61296 217 aa15.93■□□□□ 0.14
SS18-204ENST00000539244 DGKHQ86XP1 1220 aa15.93■□□□□ 0.14
SS18-204ENST00000539244 TBC1D10CQ8IV04 446 aa15.93■□□□□ 0.14
SS18-204ENST00000539244 TET1Q8NFU7 2136 aa15.93■□□□□ 0.14
SS18-204ENST00000539244 ADAMTS19Q8TE59 1207 aa15.93■□□□□ 0.14
SS18-204ENST00000539244 COPS5Q92905 334 aa15.93■□□□□ 0.14
SS18-204ENST00000539244 SLC9A7Q96T83 725 aa15.93■□□□□ 0.14
SS18-204ENST00000539244 RNF41Q9H4P4 317 aaPredicted RBP15.93■□□□□ 0.14
SS18-204ENST00000539244 TRANK1O15050 2925 aa15.92■□□□□ 0.14
SS18-204ENST00000539244 LAMA4Q16363 1823 aa15.92■□□□□ 0.14
SS18-204ENST00000539244 ARIH2O95376 493 aa15.92■□□□□ 0.14
SS18-204ENST00000539244 BFSP2Q13515 415 aa15.92■□□□□ 0.14
SS18-204ENST00000539244 FAM47CQ5HY64 1035 aa15.92■□□□□ 0.14
SS18-204ENST00000539244 TMEM67Q5HYA8 995 aa15.92■□□□□ 0.14
SS18-204ENST00000539244 CCDC62Q6P9F0 684 aa15.92■□□□□ 0.14
SS18-204ENST00000539244 DEFB128Q7Z7B8 93 aa15.92■□□□□ 0.14
SS18-204ENST00000539244 ESR2Q92731 530 aa15.92■□□□□ 0.14
SS18-204ENST00000539244 NEDD4P46934 1319 aa15.92■□□□□ 0.14
SS18-204ENST00000539244 TRIP12Q14669 1992 aaPredicted RBP15.91■□□□□ 0.14
SS18-204ENST00000539244 PRRC2BQ5JSZ5 2229 aaKnown RBP15.91■□□□□ 0.14
SS18-204ENST00000539244 CA3P07451 260 aa15.91■□□□□ 0.14
SS18-204ENST00000539244 MFAP1P55081 439 aaKnown RBP15.91■□□□□ 0.14
SS18-204ENST00000539244 SESTD1Q86VW0 696 aa15.91■□□□□ 0.14
SS18-204ENST00000539244 RETREG2Q8NC44 543 aa15.91■□□□□ 0.14
SS18-204ENST00000539244 ANKS1AQ92625 1134 aa15.91■□□□□ 0.14
SS18-204ENST00000539244 CRBNQ96SW2 442 aa15.91■□□□□ 0.14
SS18-204ENST00000539244 UHRF1Q96T88 793 aaPredicted RBP15.91■□□□□ 0.14
SS18-204ENST00000539244 TSPYL2Q9H2G4 693 aaPredicted RBP15.91■□□□□ 0.14
SS18-204ENST00000539244 KIAA1217Q5T5P2 1943 aa15.91■□□□□ 0.14
SS18-204ENST00000539244 BAIAP3O94812 1187 aa15.9■□□□□ 0.14
SS18-204ENST00000539244 GOLGA8HP0CJ92 632 aa15.9■□□□□ 0.14
SS18-204ENST00000539244 USH1GQ495M9 461 aa15.9■□□□□ 0.14
SS18-204ENST00000539244 CCDC178Q5BJE1 867 aa15.9■□□□□ 0.14
SS18-204ENST00000539244 CAGE1Q8TC20 777 aa15.9■□□□□ 0.14
SS18-204ENST00000539244 ABCB11O95342 1321 aa15.9■□□□□ 0.14
SS18-204ENST00000539244 TRIM6-TRIM34B2RNG4 842 aa15.89■□□□□ 0.13
SS18-204ENST00000539244 GH1P01241 217 aa15.89■□□□□ 0.13
SS18-204ENST00000539244 MMP3P08254 477 aa15.89■□□□□ 0.13
SS18-204ENST00000539244 SDSP20132 328 aa15.89■□□□□ 0.13
SS18-204ENST00000539244 ARHGAP1Q07960 439 aa15.89■□□□□ 0.13
SS18-204ENST00000539244 RBL2Q08999 1139 aa15.89■□□□□ 0.13
SS18-204ENST00000539244 CDC37Q16543 378 aaPredicted RBP15.89■□□□□ 0.13
SS18-204ENST00000539244 IQCA1Q86XH1 822 aa15.89■□□□□ 0.13
SS18-204ENST00000539244 HERC6Q8IVU3 1022 aa15.89■□□□□ 0.13
SS18-204ENST00000539244 PNMA1Q8ND90 353 aa15.89■□□□□ 0.13
SS18-204ENST00000539244 SYTL5Q8TDW5 730 aaPredicted RBP15.89■□□□□ 0.13
SS18-204ENST00000539244 NSUN6Q8TEA1 469 aaKnown RBP15.89■□□□□ 0.13
SS18-204ENST00000539244 AFAP1L1Q8TED9 768 aa15.89■□□□□ 0.13
SS18-204ENST00000539244 CTAGE1Q96RT6 745 aa15.89■□□□□ 0.13
SS18-204ENST00000539244 IWS1Q96ST2 819 aa15.89■□□□□ 0.13
SS18-204ENST00000539244 ZKSCAN3Q9BRR0 538 aa15.89■□□□□ 0.13
SS18-204ENST00000539244 UBA5Q9GZZ9 404 aa15.89■□□□□ 0.13
SS18-204ENST00000539244 CPVLQ9H3G5 476 aa15.89■□□□□ 0.13
SS18-204ENST00000539244 COL20A1Q9P218 1284 aa15.89■□□□□ 0.13
SS18-204ENST00000539244 MTCH2Q9Y6C9 303 aa15.89■□□□□ 0.13
SS18-204ENST00000539244 MYH6P13533 1939 aa15.88■□□□□ 0.13
SS18-204ENST00000539244 PTPRSQ13332 1948 aa15.88■□□□□ 0.13
SS18-204ENST00000539244 ZNF213O14771 459 aa15.88■□□□□ 0.13
SS18-204ENST00000539244 BMP1P13497 986 aa15.88■□□□□ 0.13
SS18-204ENST00000539244 TAP1Q03518 808 aa15.88■□□□□ 0.13
SS18-204ENST00000539244 AAMPQ13685 434 aa15.88■□□□□ 0.13
SS18-204ENST00000539244 PTGISQ16647 500 aa15.88■□□□□ 0.13
SS18-204ENST00000539244 ASPRV1Q53RT3 343 aa15.88■□□□□ 0.13
SS18-204ENST00000539244 MCF2L2Q86YR7 1114 aa15.88■□□□□ 0.13
SS18-204ENST00000539244 SMC5Q8IY18 1101 aa15.88■□□□□ 0.13
SS18-204ENST00000539244 ADGRF4Q8IZF3 695 aa15.88■□□□□ 0.13
SS18-204ENST00000539244 CCDC155Q8N6L0 562 aa15.88■□□□□ 0.13
SS18-204ENST00000539244 IL27Q8NEV9 243 aa15.88■□□□□ 0.13
SS18-204ENST00000539244 PPP1R13LQ8WUF5 828 aa15.88■□□□□ 0.13
SS18-204ENST00000539244 AFG1LQ8WV93 481 aa15.88■□□□□ 0.13
SS18-204ENST00000539244 TBC1D5Q92609 795 aa15.88■□□□□ 0.13
SS18-204ENST00000539244 KAT2BQ92831 832 aa15.88■□□□□ 0.13
SS18-204ENST00000539244 RILPL2Q969X0 211 aa15.88■□□□□ 0.13
SS18-204ENST00000539244 TAAR1Q96RJ0 339 aa15.88■□□□□ 0.13
SS18-204ENST00000539244 LNPKQ9C0E8 428 aa15.88■□□□□ 0.13
SS18-204ENST00000539244 OSBPL3Q9H4L5 887 aa15.88■□□□□ 0.13
SS18-204ENST00000539244 NOD1Q9Y239 953 aa15.88■□□□□ 0.13
SS18-204ENST00000539244 TCF20Q9UGU0 1960 aaKnown RBP15.87■□□□□ 0.13
SS18-204ENST00000539244 EPOPA6NHQ4 379 aa15.87■□□□□ 0.13
SS18-204ENST00000539244 KIF28PB7ZC32 967 aa15.87■□□□□ 0.13
SS18-204ENST00000539244 GTPBP6O43824 516 aaPredicted RBP15.87■□□□□ 0.13
SS18-204ENST00000539244 PARNO95453 639 aaKnown RBP15.87■□□□□ 0.13
SS18-204ENST00000539244 COL9A1P20849 921 aa15.87■□□□□ 0.13
SS18-204ENST00000539244 GPNMBQ14956 572 aa15.87■□□□□ 0.13
SS18-204ENST00000539244 STXBP2Q15833 593 aa15.87■□□□□ 0.13
SS18-204ENST00000539244 LY6KQ17RY6 165 aa15.87■□□□□ 0.13
SS18-204ENST00000539244 AAK1Q2M2I8 961 aa15.87■□□□□ 0.13
SS18-204ENST00000539244 EMID1Q96A84 441 aaPredicted RBP15.87■□□□□ 0.13
SS18-204ENST00000539244 FTOQ9C0B1 505 aaKnown RBP eCLIP15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms